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Athreya, A. P., Iyer, R., Wang, L., Weinshilboum, R. M., & Bobo, W. V. (2019). Integration of machine learning and pharmacogenomic biomarkers for predicting response to antidepressant treatment: Can computational intelligence be used to augment clinical assessments? Pharmacogenomics, 20(14), 983-988. https://doi.org/10.2217/pgs-2019-0119
Kinson, C., Tang, X., Zuo, Z., & Qu, A. (Accepted/In press). Longitudinal Principal Component Analysis With an Application to Marketing Data. Journal of Computational and Graphical Statistics. https://doi.org/10.1080/10618600.2019.1677244
Nelson, B. W., Wright, D. B., Allen, N. B., & Laurent, H. K. (2019). Maternal stress and social support prospectively predict infant inflammation. Brain, Behavior, and Immunity. https://doi.org/10.1016/j.bbi.2019.05.010
Rustom, L. E., Poellmann, M. J., & Wagoner Johnson, A. J. (2019). Mineralization in micropores of calcium phosphate scaffolds. Acta Biomaterialia, 83, 435-455. https://doi.org/10.1016/j.actbio.2018.11.003
Nallasamy, S., Kaya Okur, H. S., Bhurke, A., Davila, J., Li, Q., Young, S. L., ... Bagchi, I. C. (2019). Msx Homeobox Genes Act Downstream of BMP2 to Regulate Endometrial Decidualization in Mice and in Humans. Endocrinology, 160(7), 1631-1644. https://doi.org/10.1210/en.2019-00131
Warnow, T. (2019). New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation. In M. A. Vega-Rodríguez, I. Holmes, & C. Martín-Vide (Eds.), Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings (pp. 3-21). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11488 LNBI). Springer-Verlag. https://doi.org/10.1007/978-3-030-18174-1_1
Duffy, D. M., Ko, C., Jo, M., Brannstrom, M., & Curry, T. E. (2019). Ovulation: Parallels with inflammatory processes. Endocrine reviews, 40(2), 369-416. https://doi.org/10.1210/er.2018-00075
Lewis, J. A., Mendenhall, R., Ojiemwen, A., Thomas, M., Riopelle, C., Harwood, S. A., & Browne Huntt, M. (2019). Racial Microaggressions and Sense of Belonging at a Historically White University. American Behavioral Scientist. https://doi.org/10.1177/0002764219859613
Fuzawa, M., Smith, R. L., Ku, K. M., Shisler, J. L., Feng, H., Juvik, J. A., & Nguyen, T. H. (Accepted/In press). Roles of Vegetable Surface Properties and Sanitizer Type on Annual Disease Burden of Rotavirus Illness by Consumption of Rotavirus-Contaminated Fresh Vegetables: A Quantitative Microbial Risk Assessment. Risk Analysis. https://doi.org/10.1111/risa.13426
Nelson, T. C., Crandall, J. G., Ituarte, C. M., Catchen, J. M., & Cresko, W. A. (2019). Selection, linkage, and population structure interact to shape genetic variation among threespine stickleback genomes. Genetics, 212(4), 1367-1382. https://doi.org/10.1534/genetics.119.302261
Kendig, K. I., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Heldenbrand, J. R., ... Mainzer, L. S. (2019). SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy. Frontiers in Genetics, 10(JUL), [736]. https://doi.org/10.3389/fgene.2019.00736
Xiang, D., Zhao, S. D., & Tony Cai, T. (2019). Signal classification for the integrative analysis of multiple sequences of large-scale multiple tests. Journal of the Royal Statistical Society. Series B: Statistical Methodology, 81(4), 707-734. https://doi.org/10.1111/rssb.12323
Shahoei, S. H., Kim, Y. C., Cler, S. J., Ma, L., Anakk, S., Kemper, J. K., & Nelson, E. R. (2019). Small Heterodimer Partner Regulates Dichotomous T Cell Expansion by Macrophages. Endocrinology, 160(7), 1573-1589. https://doi.org/10.1210/en.2019-00025
Doden, H. L., Pollet, R. M., Mythen, S. M., Wawrzak, Z., Devendran, S., Cann, I., ... Ridlon, J. M. (2019). Structural and biochemical characterization of 20-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32. Journal of Biological Chemistry, 294(32), 12040-12053. https://doi.org/10.1074/jbc.RA119.009390
Dutta, S., Aoki, K., Doungkamchan, K., Tiemeyer, M., Bovin, N., & Miller, D. J. (2019). Sulfated Lewis A trisaccharide on oviduct membrane glycoproteins binds bovine sperm and lengthens sperm lifespan. Journal of Biological Chemistry, 294(36), 13445-13463. https://doi.org/10.1074/jbc.RA119.007695
Dawson, D. N., Volpe, V. V., & Laurent, H. K. (2019). Synergistic Effects of Psychological Intimate Partner Violence Exposure and Gender Discrimination on Postnatal Mental Health Trajectories. Journal of interpersonal violence. https://doi.org/10.1177/0886260519844274
Ridlon, J. M., Devendran, S., Alves, J. M., Doden, H., Wolf, P. G., Pereira, G. V., ... Gaskins, H. R. (2019). The ‘in vivo lifestyle’ of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice. Gut Microbes. https://doi.org/10.1080/19490976.2019.1618173
Nelson, B. W., Bernstein, R., Allen, N. B., & Laurent, H. K. (Accepted/In press). The quality of early infant-caregiver relational attachment and longitudinal changes in infant inflammation across 6 months. Developmental psychobiology. https://doi.org/10.1002/dev.21940
Xue, L., Shu, X., Shi, P., Wu, C. O., & Qu, A. (Accepted/In press). Time-varying feature selection for longitudinal analysis. Statistics in Medicine. https://doi.org/10.1002/sim.8412
Le, T., Sy, A., Molloy, E. K., Zhang, Q. R., Rao, S., & Warnow, T. (2019). Using INC Within Divide-and-Conquer Phylogeny Estimation. In M. A. Vega-Rodríguez, I. Holmes, & C. Martín-Vide (Eds.), Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings (pp. 167-178). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11488 LNBI). Springer-Verlag. https://doi.org/10.1007/978-3-030-18174-1_12
Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., ... Sinha, S. (2019). Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. Genes, Brain and Behavior, e12502. https://doi.org/10.1111/gbb.12502
Wang, Y., Araud, E., Shisler, J. L., Nguyen, T. H., & Yuan, B. (2019). Influence of algal organic matter on MS2 bacteriophage inactivation by ultraviolet irradiation at 220 nm and 254 nm. Chemosphere, 214, 195-202. https://doi.org/10.1016/j.chemosphere.2018.09.065
Lin, H., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Impact of Malicious SCADA Commands on Power Grids' Dynamic Responses. In 2018 IEEE International Conference on Communications, Control, and Computing Technologies for Smart Grids, SmartGridComm 2018 [8587462] (2018 IEEE International Conference on Communications, Control, and Computing Technologies for Smart Grids, SmartGridComm 2018). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SmartGridComm.2018.8587462
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Víctor Moreno-Mayar, J., Vinner, L., De Barros Damgaard, P., De La Fuente, C., Chan, J., Spence, J. P., ... Willerslev, E. (2018). Early human dispersals within the Americas. Science, 362(6419), [eaav2621]. https://doi.org/10.1126/science.aav2621
Pei, Y., Shahoei, S. H., Li, Y., Reece, P. J., Nelson, E. R., Gooding, J. J., & Kilian, K. A. (2018). Vertical Integration of Cell-Laden Hydrogels with Bioinspired Photonic Crystal Membranes. Advanced Materials Interfaces, 5(23), [1801233]. https://doi.org/10.1002/admi.201801233
Lee, G., Sherer, N. A., Kim, N. H., Rajic, E., Kaur, D., Urriola, N., ... Kuhlman, T. E. (2018). Testing the retroelement invasion hypothesis for the emergence of the ancestral eukaryotic cell. Proceedings of the National Academy of Sciences of the United States of America, 115(49), 12465-12470. https://doi.org/10.1073/pnas.1807709115
Winters, R. A., Hamilton, D. N., Bhatnagar, A. S., Fitzgerald, R., Bovin, N., & Miller, D. J. (2018). Porcine sperm binding to oviduct cells and glycans as supplements to traditional laboratory semen analysis. Journal of animal science, 96(12), 5265-5275. https://doi.org/10.1093/jas/sky372
Tabe-Bordbar, S., Emad, A., Zhao, S. D., & Sinha, S. (2018). A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. Scientific reports, 8(1), [6620]. https://doi.org/10.1038/s41598-018-24937-4
Summer internship for INdigenous peoples in Genomics (SING) Consortium (2018). A framework for enhancing ethical genomic research with Indigenous communities. Nature communications, 9(1), [2957]. https://doi.org/10.1038/s41467-018-05188-3
Liu, D., Ray, B., Neavin, D. R., Zhang, J., Athreya, A. P., Biernacka, J. M., ... Weinshilboum, R. M. (2018). Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: Metabolomics-informed genomics. Translational psychiatry, 8(1), [56]. https://doi.org/10.1038/s41398-017-0056-8
Sun, P. P., Araud, E. M., Huang, C., Shen, Y., Monroy, G. L., Zhong, S., ... Nguyen, T. H. (2018). Disintegration of simulated drinking water biofilms with arrays of microchannel plasma jets. npj Biofilms and Microbiomes, 4(1), [24]. https://doi.org/10.1038/s41522-018-0063-4
Shen, Y., Huang, P. C., Huang, C., Sun, P., Monroy, G. L., Wu, W., ... Nguyen, T. H. (2018). Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms. npj Biofilms and Microbiomes, 4(1), [15]. https://doi.org/10.1038/s41522-018-0058-1
Hernandez, J., Volland, A., Leyshon, B. J., Juda, M., Ridlon, J. M., Johnson, R. W., & Steelman, A. J. (2018). Effect of imidacloprid ingestion on immune responses to porcine reproductive and respiratory syndrome virus. Scientific reports, 8(1), [11615]. https://doi.org/10.1038/s41598-018-30093-6
Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., ... Ming, R. (2018). Erratum to: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. (Nature Genetics, (2018), 50, 11, (1565-1573), 10.1038/s41588-018-0237-2). Nature Genetics, 50(12). https://doi.org/10.1038/s41588-018-0293-7
Chen, K. L. A., Liu, X., Zhao, Y. C., Hieronymi, K., Rossi, G., Auvil, L. S., ... Madak-Erdogan, Z. (2018). Long-Term Administration of Conjugated Estrogen and Bazedoxifene Decreased Murine Fecal β-Glucuronidase Activity Without Impacting Overall Microbiome Community. Scientific reports, 8(1), [8166]. https://doi.org/10.1038/s41598-018-26506-1
Gardner, A. M., Muturi, E. J., & Allan, B. F. (2018). Discovery and exploitation of a natural ecological trap for a mosquito disease vector. Proceedings of the Royal Society B: Biological Sciences, 285(1891), [20181962]. https://doi.org/10.1098/rspb.2018.1962
Collins, K., & Warnow, T. (2018). PASTA for proteins. Bioinformatics, 34(22), 3939-3941. https://doi.org/10.1093/bioinformatics/bty495
Xu, J., Huang, C., Shi, X., Dong, S., Yuan, B., & Nguyen, T. H. (2018). Role of drinking water biofilms on residual chlorine decay and trihalomethane formation: An experimental and modeling study. Science of the Total Environment, 642, 516-525. https://doi.org/10.1016/j.scitotenv.2018.05.363
Harris, S. C., Devendran, S., Méndez- García, C., Mythen, S. M., Wright, C. L., Fields, C. J., ... Ridlon, J. M. (2018). Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243 T Gut Microbes, 9(6), 523-539. https://doi.org/10.1080/19490976.2018.1458180
Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., ... Ming, R. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565-1573. https://doi.org/10.1038/s41588-018-0237-2
Nowak, R. A. (2018). An interview with Dr Patricia A. Martin-DeLeon. Biology of reproduction, 99(5), 899-902. https://doi.org/10.1093/biolre/ioy103
Dong, S., Massalha, N., Plewa, M. J., & Nguyen, T. H. (2018). The impact of disinfection Ct values on cytotoxicity of agricultural wastewaters: Ozonation vs. chlorination. Water Research, 144, 482-490. https://doi.org/10.1016/j.watres.2018.07.065
Zheng, X., Xue, L., & Qu, P. (2018). Time-varying correlation structure estimation and local-feature detection for spatio-temporal data. Journal of Multivariate Analysis, 168, 221-239. https://doi.org/10.1016/j.jmva.2018.07.012
Hale, V. L., Jeraldo, P., Chen, J., Mundy, M., Yao, J., Priya, S., ... Chia, N. (2018). Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome medicine, 10(1). https://doi.org/10.1186/s13073-018-0586-6
Jha, S., Brandt, J., Gentile, A., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Characterizing Supercomputer Traffic Networks Through Link-Level Analysis. In Proceedings - 2018 IEEE International Conference on Cluster Computing, CLUSTER 2018 (pp. 562-570). [8514916] (Proceedings - IEEE International Conference on Cluster Computing, ICCC; Vol. 2018-September). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CLUSTER.2018.00072
Banerjee, S. S., Athreya, A. P., Kalbarczyk, Z. T., Lumetta, S. S., & Iyer, R. K. (2018). A ML-based runtime system for executing dataflow graphs on heterogeneous processors. In SoCC 2018 - Proceedings of the 2018 ACM Symposium on Cloud Computing (SoCC 2018 - Proceedings of the 2018 ACM Symposium on Cloud Computing). Association for Computing Machinery, Inc. https://doi.org/10.1145/3267809.3275474
Yuan, J., Hu, Z., Mahal, B. A., Zhao, S. D., Kensler, K. H., Pi, J., ... Zhang, L. (2018). Integrated Analysis of Genetic Ancestry and Genomic Alterations across Cancers. Cancer Cell, 34(4), 549-560.e9. https://doi.org/10.1016/j.ccell.2018.08.019
Keesing, F., Ostfeld, R. S., Okanga, S., Huckett, S., Bayles, B. R., Chaplin-Kramer, R., ... Allan, B. F. (2018). Consequences of integrating livestock and wildlife in an African savanna. Nature Sustainability, 1(10), 566-573. https://doi.org/10.1038/s41893-018-0149-2
Bi, X., & Qu, P. (2018). A mixed-effects estimating equation approach to nonignorable missing longitudinal data with Refreshment samples. Statistica Sinica, 28(4), 1653-1675. https://doi.org/10.5705/ss.202015.0317
Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Johnson, A. W., Luyten, F. P., & Picart, C. (2018). Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives. Biomaterials, 180, 143-162. https://doi.org/10.1016/j.biomaterials.2018.07.017
Lin, H., Kalbarczyk, Z. T., & Iyer, R. K. (Accepted/In press). RAINCOAT: RAndomization of Network Communication in Power Grid Cyber INfrastructure to Mislead Attackers. IEEE Transactions on Smart Grid. https://doi.org/10.1109/TSG.2018.2870362
Harwood, S. A., Mendenhall, R., Lee, S. S., Riopelle, C., & Huntt, M. B. (2018). Everyday Racism in Integrated Spaces: Mapping the Experiences of Students of Color at a Diversifying Predominantly White Institution. Annals of the American Association of Geographers, 108(5), 1245-1259. https://doi.org/10.1080/24694452.2017.1419122
Alexander, C., Cross, T. W. L., Devendran, S., Neumer, F., Theis, S., Ridlon, J. M., ... Swanson, K. S. (2018). Effects of prebiotic inulin-Type fructans on blood metabolite and hormone concentrations and faecal microbiota and metabolites in overweight dogs. Clay Minerals, 120(6), 711-720. https://doi.org/10.1017/S0007114518001952
Brinkworth, J. F., & Babbitt, C. C. (2018). Immune system promiscuity in human and nonhuman primate evolution. Human biology, 90(4), 251-269. https://doi.org/10.13110/humanbiology.90.4.01
Gassen, J., Prokosch, M. L., Makhanova, A., Eimerbrink, M. J., White, J. D., Proffitt Leyva, R. P., ... Hill, S. E. (2018). Behavioral immune system activity predicts downregulation of chronic basal inflammation. PloS one, 13(9), [e0203961]. https://doi.org/10.1371/journal.pone.0203961
Moran, R. L., Zhou, M., Catchen, J. M., & Fuller, B. C. (2018). Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles. Ecology and Evolution, 8(18), 9282-9294. https://doi.org/10.1002/ece3.4434
Löber, U., Hobbs, M., Dayaram, A., Tsangaras, K., Jones, K., Alquezar-Planas, D. E., ... Greenwood, A. D. (2018). Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion. Proceedings of the National Academy of Sciences of the United States of America, 115(34), 8609-8614. https://doi.org/10.1073/pnas.1807598115
Pattabiraman, S., & Warnow, T. (2018). Are Profile Hidden Markov Models Identifiable? In ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (pp. 448-456). (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics). Association for Computing Machinery, Inc. https://doi.org/10.1145/3233547.3233563
Stephens, Z. D., & Iyer, R. K. (2018). Measuring the Mappability Spectrum of Reference Genome Assemblies. In ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (pp. 47-52). (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics). Association for Computing Machinery, Inc. https://doi.org/10.1145/3233547.3233582
Potter, B. A., Baichtal, J. F., Beaudoin, A. B., Fehren-Schmitz, L., Haynes, C. V., Holliday, V. T., ... Surovell, T. A. (2018). Current evidence allows multiple models for the peopling of the Americas. Science Advances, 4(8), [eaat5473]. https://doi.org/10.1126/sciadv.aat5473
Barakat, R., Lin, P. C., Park, C. J., Best-Popescu, C., Bakry, H. H., Abosalem, M. E., ... Ko, C. M. (2018). Corrigendum to "Prenatal Exposure to DEHP Induces Neuronal Degeneration and Neurobehavioral Abnormalities in Adult Male Mice". Toxicological sciences : an official journal of the Society of Toxicology, 164(2). https://doi.org/10.1093/toxsci/kfy165
Khan, R., Nguyen, T. H., Shisler, J. L., Lin, L. S., Jutla, A., & Colwell, R. (2018). Evaluation of risk of cholera after a natural disaster: Lessons learned from the 2015 Nepal earthquake. Journal of Water Resources Planning and Management, 144(8), [04018044]. https://doi.org/10.1061/(ASCE)WR.1943-5452.0000929
Zhang, Q., Rao, S., & Warnow, T. (2018). New absolute fast converging phylogeny estimation methods with improved scalability and accuracy. In L. Parida, & E. Ukkonen (Eds.), 18th International Workshop on Algorithms in Bioinformatics, WABI 2018 [8] (Leibniz International Proceedings in Informatics, LIPIcs; Vol. 113). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.WABI.2018.8
Athreya, A., Iyer, R., Neavin, D., Wang, L., Weinshilboum, R., Kaddurah-Daouk, R., ... Bobo, W. (2018). Augmentation of physician assessments with multi-omics enhances predictability of drug response: A case study of major depressive disorder. IEEE Computational Intelligence Magazine, 13(3), 20-31. [8416980]. https://doi.org/10.1109/MCI.2018.2840660
Nelson, K. L., Boehm, A. B., Davies-Colley, R. J., Dodd, M. C., Kohn, T., Linden, K. G., ... Zepp, R. G. (2018). Sunlight-mediated inactivation of health-relevant microorganisms in water: a review of mechanisms and modeling approaches. Environmental Science: Processes and Impacts, 20(8), 1089-1122. https://doi.org/10.1039/c8em00047f
Jha, S., Banerjee, S. S., Cyriac, J., Kalbarczyk, Z. T., & Iyer, R. K. (2018). AVFI: Fault Injection for Autonomous Vehicles. In Proceedings - 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks Workshops, DSN-W 2018 (pp. 55-56). [8416212] (Proceedings - 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks Workshops, DSN-W 2018). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DSN-W.2018.00027
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Shih, H. Y., Mickalide, H., Fraebel, D. T., Goldenfeld, N., & Kuehn, S. (2018). Biophysical constraints determine the selection of phenotypic fluctuations during directed evolution. Physical Biology, 15(6), [065003]. https://doi.org/10.1088/1478-3975/aac4e6
Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., ... Frantz, L. A. F. (2018). The evolutionary history of dogs in the Americas. Science, 361(6397), 81-85. https://doi.org/10.1126/science.aao4776
Brandt, A. L., Green, M. L., Ishida, Y., Roca, A. L., Novakofski, J., & Mateus-Pinilla, N. E. (2018). Influence of the geographic distribution of prion protein gene sequence variation on patterns of chronic wasting disease spread in white-tailed deer (Odocoileus virginianus). Prion, 12(3-4), 204-215. https://doi.org/10.1080/19336896.2018.1474671
Lipscomb, S. T., Becker, D. R., Laurent, H. K., Neiderhiser, J. M., Shaw, D. S., Natsuaki, M. N., ... Leve, L. D. (2018). Examining morning HPA axis activity as a moderator of hostile, over-reactive parenting on children's skills for success in school. Infant and Child Development, 27(4), [e2083]. https://doi.org/10.1002/icd.2083
Josek, T., Walden, K. K. O., Allan, B. F., Alleyne, M., & Robertson, H. M. (2018). A foreleg transcriptome for Ixodes scapularis ticks: Candidates for chemoreceptors and binding proteins that might be expressed in the sensory Haller's organ. Ticks and Tick-borne Diseases, 9(5), 1317-1327. https://doi.org/10.1016/j.ttbdis.2018.05.013
Athreya, A. P., Gaglio, A. J., Cairns, J., Kalari, K. R., Weinshilboum, R. M., Wang, L., ... Iyer, R. K. (2018). Machine learning helps identify new drug mechanisms in triple-negative breast cancer. IEEE Transactions on Nanobioscience, 17(3), 251-259. [8401331]. https://doi.org/10.1109/TNB.2018.2851997
Bassham, S., Catchen, J., Lescak, E., von Hippel, F. A., & Cresko, W. A. (2018). Repeated selection of alternatively adapted haplotypes creates sweeping genomic remodeling in stickleback. Genetics, 209(3), 921-939. https://doi.org/10.1534/genetics.117.300610
Zhou, W., Davis, E. A., Li, K., Nowak, R. A., & Dailey, M. J. (2018). Sex differences influence intestinal epithelial stem cell proliferation independent of obesity. Physiological Reports, 6(13), [e13746]. https://doi.org/10.14814/phy2.13746
Vachaspati, P., & Warnow, T. (2018). SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space. Molecular Phylogenetics and Evolution, 124, 122-136. https://doi.org/10.1016/j.ympev.2018.03.006
Halsey, S. J., Allan, B. F., & Miller, J. R. (2018). The role of Ixodes scapularis, Borrelia burgdorferi and wildlife hosts in Lyme disease prevalence: A quantitative review. Ticks and Tick-borne Diseases, 9(5), 1103-1114. https://doi.org/10.1016/j.ttbdis.2018.04.006
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Ishida, Y., Gugala, N. A., Georgiadis, N. J., & Roca, A. L. (2018). Evolutionary and demographic processes shaping geographic patterns of genetic diversity in a keystone species, the African forest elephant (Loxodonta cyclotis). Ecology and Evolution, 8(10), 4919-4931. https://doi.org/10.1002/ece3.4062
Lin, H., Chen, C., Wang, J., Qi, J., Jin, D., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Self-healing attack-resilient PMU network for power system operation. IEEE Transactions on Smart Grid, 9(3), 1551-1565. https://doi.org/10.1109/TSG.2016.2593021
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Chung, K., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Poster: Indirect cyber attacks by perturbation of environment control: A data driven attack model. In Proceedings of the 5th Annual Symposium and Bootcamp on Hot Topics in the Science of Security, HoTSoS 2018 [3191681] (ACM International Conference Proceeding Series). Association for Computing Machinery. https://doi.org/10.1145/3190619.3191681
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Pomatto, V., Cottone, E., Cocci, P., Mozzicafreddo, M., Mosconi, G., Nelson, E. R., ... Bovolin, P. (2018). Plasticizers used in food-contact materials affect adipogenesis in 3T3-L1 cells. Journal of Steroid Biochemistry and Molecular Biology, 178, 322-332. https://doi.org/10.1016/j.jsbmb.2018.01.014
Vazquez-Bravo, B., Gonçalves, K., Shisler, J. L., & Marinas, B. J. (2018). Adenovirus Replication Cycle Disruption from Exposure to Polychromatic Ultraviolet Irradiation. Environmental Science and Technology, 52(6), 3652-3659. https://doi.org/10.1021/acs.est.7b06082
Branscomb, E., Biancalani, T., Goldenfeld, N., & Russell, M. (2018). Escapement mechanisms and the conversion of disequilibria; the engines of creation. Physics Reports, 677, 1-60. https://doi.org/10.1016/j.physrep.2017.02.001
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Keesing, F., Ostfeld, R. S., Young, T. P., & Allan, B. F. (2018). Cattle and rainfall affect tick abundance in central Kenya. Parasitology, 145(3), 345-354. https://doi.org/10.1017/S003118201700155X
Kannan, A., Bhurke, A., Sitruk-Ware, R., Lalitkumar, P. G., Gemzell-Danielsson, K., Williams, A. R. W., ... Bagchi, I. C. (2018). Characterization of Molecular Changes in Endometrium Associated With Chronic Use of Progesterone Receptor Modulators: Ulipristal Acetate Versus Mifepristone. Reproductive Sciences, 25(3), 320-328. https://doi.org/10.1177/1933719117746764
Winters, R. A., Nettenstrom, L. M., Lopez, D. G., Willenburg, K. L., Vishwanath, R., Bovin, N. V., & Miller, D. J. (2018). Effect of sorting boar spermatozoa by sex chromosomes on oviduct cell binding. Theriogenology, 108, 22-28. https://doi.org/10.1016/j.theriogenology.2017.11.010
Hu, R., Morley, M. P., Brandimarto, J., Tucker, N. R., Parsons, V. A., Zhao, S. D., ... Cappola, T. P. (2018). Genetic Reduction in Left Ventricular Protein Kinase C-α and Adverse Ventricular Remodeling in Human Subjects. Circulation. Genomic and precision medicine, 11(3), e001901. https://doi.org/10.1161/CIRCGEN.117.001901
Vidimar, V., Chakravarti, D., Bulun, S. E., Yin, P., Nowak, R., Wei, J. J., & Kim, J. J. (2018). The AKT/BCL-2 Axis Mediates Survival of Uterine Leiomyoma in a Novel 3D Spheroid Model. Endocrinology, 159(3), 1453-1462. https://doi.org/10.1210/en.2017-03191
Molloy, E. K., & Warnow, T. (2018). To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods. Systematic biology, 67(2), 285-303. https://doi.org/10.1093/sysbio/syx077
Eiserhardt, W. L., Antonelli, A., Bennett, D. J., Botigué, L. R., Burleigh, J. G., Dodsworth, S., ... Baker, W. J. (2018). A roadmap for global synthesis of the plant tree of life. American journal of botany, 105(3), 614-622. https://doi.org/10.1002/ajb2.1041
Harris, S. C., Devendran, S., Alves, J. M. P., Mythen, S. M., Hylemon, P. B., & Ridlon, J. M. (2018). Identification of a gene encoding a flavoprotein involved in bile acid metabolism by the human gut bacterium Clostridium scindens ATCC 35704. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1863(3), 276-283. https://doi.org/10.1016/j.bbalip.2017.12.001
Mallott, E. K., Amato, K. R., Garber, P. A., & Malhi, R. S. (2018). Influence of fruit and invertebrate consumption on the gut microbiota of wild white-faced capuchins (Cebus capucinus). American journal of physical anthropology, 165(3), 576-588. https://doi.org/10.1002/ajpa.23395
Raulo, A., Ruokolainen, L., Lane, A., Amato, K., Knight, R., Leigh, S., ... Tecot, S. R. (2018). Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality. Journal of Animal Ecology, 87(2), 388-399. https://doi.org/10.1111/1365-2656.12781
Greenwood, A. D., O'Brien, S. P., Roca, A. L., & Eiden, M. V. (2018). Transmission, evolution, and endogenization: Lessons learned from recent retroviral invasions. Microbiology and Molecular Biology Reviews, 82(1), [e00044-17]. https://doi.org/10.1128/MMBR.00044-17
Ryerson, M. R., & Shisler, J. L. (2018). Characterizing the effects of insertion of a 5.2 kb region of a VACV genome, which contains known immune evasion genes, on MVA immunogenicity. Virus Research, 246, 55-64. https://doi.org/10.1016/j.virusres.2018.01.004
Gernat, T., Rao, V. D., Middendorf, M., Dankowicz, H., Goldenfeld, N., & Robinson, G. E. (2018). Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honeybee social networks. Proceedings of the National Academy of Sciences of the United States of America, 115(7), 1433-1438. https://doi.org/10.1073/pnas.1713568115
de Flamingh, A., Roca, A. L., & van Aarde, R. J. (2018). Origin and phylogeography of African savannah elephants (Loxodonta africana) in Kruger and nearby parks in southern Africa. Conservation Genetics, 19(1), 155-167. https://doi.org/10.1007/s10592-017-1005-z
Delker, B. C., Bernstein, R. E., & Laurent, H. K. (2018). Out of harm's way: Secure versus insecure-disorganized attachment predicts less adolescent risk taking related to childhood poverty. Development and Psychopathology, 30(1), 283-296. https://doi.org/10.1017/S0954579417000621
Biswas, S., Smith, G. L., Roy, E. J., Ward, B., & Shisler, J. L. (2018). A comparison of the effect of molluscum contagiosum virus MC159 and MC160 proteins on vaccinia virus virulence in intranasal and intradermal infection routes. Journal of General Virology, 99(2), 246-252. [001006]. https://doi.org/10.1099/jgv.0.001006
Nelson, B. W., Allen, N. B., & Laurent, H. K. (2018). Infant HPA axis as a potential mechanism linking maternal mental health and infant telomere length. Psychoneuroendocrinology, 88, 38-46. https://doi.org/10.1016/j.psyneuen.2017.11.008
Mendenhall, R., Kramer, K. Z., & Bellisle, D. (2018). Low- and moderate-income families’ avenues to mobility: Overcoming threats to asset accumulation and remaining in undesirable neighborhoods. Research in Social Stratification and Mobility, 53, 26-39. https://doi.org/10.1016/j.rssm.2017.12.001
Mulder, N., Schwartz, R., Brazas, M. D., Brooksbank, C., Gaeta, B., Morgan, S. L., ... Welch, L. (2018). The development and application of bioinformatics core competencies to improve bioinformatics training and education. PLoS computational biology, 14(2), [e1005772]. https://doi.org/10.1371/journal.pcbi.1005772
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Moreno-Mayar, J. V., Potter, B. A., Vinner, L., Steinrücken, M., Rasmussen, S., Terhorst, J., ... Willerslev, E. (2018). Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans. Nature, 553(7687), 203-207. https://doi.org/10.1038/nature25173
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de Flamingh, A., Mallott, E. K., Roca, A. L., Boraas, A. S., & Malhi, R. S. (2018). Species identification and mitochondrial genomes of ancient fish bones from the Riverine Kachemak tradition of the Kenai Peninsula, Alaska. Mitochondrial DNA Part B: Resources, 3(1), 409-411. https://doi.org/10.1080/23802359.2018.1456371
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Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., ... Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proceedings of the National Academy of Sciences of the United States of America, 115(11), E2566-E2574. https://doi.org/10.1073/pnas.1720554115
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Park, C. J., Kim, H., Jin, J., Barakat, R., Lin, P. C., Choi, J. M., & Ko, C. M. J. (2018). Porcine intestinal lymphoid tissues synthesize estradiol. Journal of Veterinary Science, 19(4), 477-482. https://doi.org/10.4142/jvs.2018.19.4.477
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