Genomic Ecology of Global Change

Publications

 

Elizabeth A. Ainsworth (IGB Publications)

Gillespie KM, Xu F, Richter KT, McGrath JM, Markelz RJ, Ort DR, Leakey ADB, Ainsworth EA (2012) Greater antioxidant and respiratory metabolism in field-grown soybean exposed to elevated O3 under both ambient and elevated CO2 concentrations. Plant Cell Environment 35: 169-184

Gillispie KM, Rogers A, Ainsworth EA (2011) Growth at elevated ozone or elevated carbon dioxide concentration alters antioxidant capacity and response to acute oxidative stress in soybean (Glycine max).  Journal of Experimental Botany 62: 2667-2678

Leakey ADB, Xu F, Gillespie KM, McGrath JM, Ainsworth EA, Ort DR (2009)  The genomic basis for stimulated respiration by plants growing under elevated carbon dioxide.  Proceedings of the National Academy of Sciences 106: 3597-3602

Leakey ADB,  Ainsworth EA, Bernard DM, Markelz RJC, Ort DR, Placella SA, Rogers A, Smith MD, Sudderth EA, Weston DJ, Wullschleger SD, Yuan S (2009) Gene expression profiling - opening the black box of plant ecoystem responses to global change.  Global Change Biology 15: 1201-1215

Ainsworth EA, Rogers A, Leakey ADB (2008) Targets for crop biotechnology in a future high CO2 and high-O3 world.  Plant Physiology 147: 13-19

Ainsworth EA, Gillespie KM (2007) Estimation of total phenolic content and other oxidation substrates in plant tissues using Folin-Ciocalteu reagent.  Nature Protocols 2: 875-977

Gillespie KM, Ainsworth EA (2007) Measurement of reduced, oxidized and total ascorbate content in plants.  Nature Protocols 2: 871-874

Gillespie KM, Chae JM, Ainsworth EA (2007) Rapid measurement of total antioxidant capacity in plants.  Nature Protocols 2: 867-870

Long SP, Ainsworth EA, Leakey ADB, Nosberger J, Ort DR (2006)  Food for thought:  open-air field experiments suggest lower than expected crop yield stimulation with rising [CO2]. Science 312: 1918-1921

Ainsworth EA, Rogers A, Vodkin LO, Walter A, Schurr U (2006)  The effects of elevated [CO2] on soybean gene expression.  An analysis of growing and mature leaves.  Plant Physiology 142: 135-147

Leakey ADB, Uribelarrea M, Ainsworth EA, Naidu SL, Rogers A, Ort DR, Long SP (2006) Photosynthesis, productivity and yield of Zea mays are not affected by open-air elevation of CO2 concentration in the absence of drought. Plant Physiology, 140: 779-790.

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May R. Berenbaum (IGB Publications)

Casteel CL, Segal LM, Niziolek OK, Berenbaum MR, DeLucia EH (2012) Elevated carbon dioxide increases salicyclic acid in Glycine max.  Environmental Entomology 41(6): 1435-1442

Hamilton J, Zangerl AR, Berenbaum MR, Sparks J, Elich L, Gattis A, Eisenstein A, and DeLucia EH (2012)  Elevated atmospheric CO2 alters arthropod community structure in a forest understory.  Acta Oecologica 43: 80-85

Niziolek O, Berenbaum MR, DeLucia EH (2012) Impact of elevated CO2 and increased temperature on Japanese beetle herbivory.  Insect Science,  DOI: 10.1111/j.1744-7917.2012.01515.x

Miresmailli S, Zeri M, Zangerl AR, Bernacchi CJ, Berenbaum MR, and DeLucia EH (2012) Impacts of biofuel crops on atmospheric volatile organic composition and potential consequences for global climate change.  Global Change Biology: Energy DOI: 10.1111/j/1757-1707.2012.01189.x

Casteel C, Berenbaum MR, DeLucia EH (2012) Effects of elevated CO2 and soil water content on phytohormone transcript induction in Glycine max after Popilla japonica feeding. Arthropod-Plant Interactions DOI:  10.1007/s11829-012-9195-2.

O'Neill BF, Zangerl AR, DeLucia EH, Casteel C, Zavala JA, Berenbaum M (2011) Leaf temperature of soybean growth under elevated CO2 increases Aphis glycines. (Hemiptera: Aphididae) population growth.  Insect Science DOI: 10.1111/j.1744-7917.2011.01420.x

O'Neill BF, Zangerl AR, DeLucia EH, Berenbaum MR (2010) Olfactory preferences of Popilla japonica, Vanessa cardui, and Aphis glycines for Glycine max grown under elevated CO2.  Environmental Entomology 39: 1291-1301

O'Neill BF, Zangerl AR, Bilgin DD, Casteel C, Zavala JA, Delucia EH, Berenbaum MR (2010) Impact of elevated levels of atmospheric CO2 and herbivory on flavonoids of soybean (Glycine max Linnaeus)  J. Chemical Ecol. 36: 35-45 (special issue on global climate change, January 2010)  10.1007/s10886-009-9727-0

Zavala JA, Casteel C, Nabity PD, Berenbaum MR, DeLucia EH (2009) Role of cysteine proteinase inhibitos in preference of Japanese beetles (Popilla japonica) for soybean (Glycine max) leaves of different ages and grown under elevated CO2.  Oecologia 161: 35-41

Dermody O, O'Neill BF, Berenbaum MR, DeLucia EH (2008)  Feeding behavior of invasive and mative insects in an agroecoystem modified by exposure to elevated carbon dioxide.  Arthropod Plant Interactions 2: 125-135

Zavala JA, Casteel C, DeLucia EH, Berenbaum MR (2008)  Anthropogenic increase in carbon dioxide compromises plant defense against invasive insects.  Proceedings of the National Academies of Sciences 105: 5129-5133

DeLucia EH, Nabity PD, Zavala JA, Berenbaum MR (2012) Climate change: resetting plant-insect interactions.  Plant Physiology DOI: http://dx.doi.org/10.1104/pp.112.204750pp.112.204750

O'Neill BF, Zangerl AR, DeLucia EH, Berenbaum MR (2008) Longevity and fecundity of Japanese beetle (Popilla japonica Newman) on foliage grown under elevated CO2 or O3.  Enivironmental Entomology 37: 601-60

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Carl J. Berbacchi (IGB Publications)

Hussain MZ, VanLoocke A, Markelz RJC, Siebers MH, Leakey ADB, Ort DR, Bernacchi CJ (submitted) Future carbon dioxide concentration decreases canopy evapotranspiration and soil water depletion by field-grown maize. Global Change Biology

Gomez- Casanovas N, Anderson-Teixeira KJ, Zeri M, Bernacchi CJ, DeLucia EH (submitted) Analysis of gap filling strategies and erros for estimating total annual soil respiration. Global Change Biology

Bagley JE, Rosenthal DM, Ruiz-Vera UM, Siebers MJ, Kumar P, Ort DR, and Bernacchi CJ (submitted) Elevated CO2, rising temperatures and C3 crops: physiology feedbacks and the future. Photosynthesis Research

Smith CM, David MB, Mitchell CA, Masters MD, Anderson-Teixieira KJ, Bernacchi CJ, DeLucia EH (2012) Reduced nitrogen losses following conversion of row crop agriculture to perennial biofuel crops.  Journal of Environmental Quality. (in press)

Anderson-Teixeira KJ, Masters MD, Black CK, Zeri M, Hussain MZ, Bernacchi CJ, DeLucia EH (2012) Altered belowground carbon cycling following land use change.  Ecosystems (in press)

VanLoocke A, Twine TE, Zeri M, Bernacchi CJ (2012) A regional comparison of water use efficiency for miscanthus, switchgrass and maize.  Agricultural and Forest Meteorology 164: 82-95

VanLoocke A, Betzelberger AM, Ainsworth EA, Bernacchi CJ (2012) Rising ozone concentrations decrease soybean evapotranspiration and water use efficiency whilst increasing canopy temperature.  New Phytologist 195: 164-171

Zeri M, Anderson-Teixeira KJ,  Hickman G, Masters MD, DeLucia EH and Bernacchi CJ (2011)  Carbon exchange by establishing biofuel crops in Central Illinois.  Agriculture, Ecosystems, and Environment 144-319-329.

Bernacchi CJ, Leakey ADB, Kimball BA, Ort DR (2011)  Growth of soybean at future tropospheric ozone concentrations decreases canopy evapotranspiration and soil water depletion.  Environmental Pollution 159: 1464-1472

Hickman G, VanLoocke A, Dohleman FG and Bernacchi CJ (2010) A comparison of canopy water use for maize and two perennial grass species identified as potential bioenergy crops. Global Change Biology- Bioenergy 2:157-168

VanLoocke A, Bernacchi CJ, Twine TE (2010) The impacts of Miscanthus production on the Midwestern U.S. hydrologic cycle.  Global Change Biology - Bioenergy 2: 180-191

Castro JC, Dohleman FG, Bernacchi CJ, Long SP (2009) Elevated CO2 Significantly Delays Reproductive Development of Soybean under Free-Air Concentration Enrichment (FACE). Journal of Experimental Botany, 60: 2945-2951.

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Patrick J. Brown  (IGB Publications)

Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, Upadhyaya HD, Riera-Lizarazu O, Brown PJ, Acharya CB, Mitchell SE, Harriman J, Glaubitz JC, Buckler ES, Kresovich S (2012) Population genomic and genome-wide association studies of agroclimate traits in sorghum.  Proceedings of the National Academy of Sciences (in press)

Brown PJ, Myles SM, Kresovich S (2011) Genetic support for phenotype-based racial classification in sorghum.  Crop Sciences 51: 1-7

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Evan H. DeLucia (IGB Publications)

Smith CM, David MB, Mitchell CA, Masters MM, Anderson-Teixeira KJ, Bernacchi CJ, DeLucia EH (2013) Reduced Nitrogen Losses after Conversion of Row Crop Agriculture to Perennial Biofuel Crops. Journal of Environmental Quality. Volume 42:219-228

Anderson -Teixeira KJ, Masters MM, Black CJ, Zeri, M, Hussain MZ, Bernacchi CJ and DeLucia EH (2013) Altered Belowground Carbon Cycling Following Land-Use Change to Perennial Bioenergy Crops. Ecosystems (DOI: 10.1007/s10021-012-9628-x)

Anderson-Teixeira KJ, Snyder PK, Twine TE, Cuadra SV, Costa MH, DeLucia EH (2012) Climate regulation services of natural and agricultural ecoregions of the Americas. Nature Climate Change. DOI 10.1038/NClimate1346

Anderson-Teixeira K, DeLucia EH (2011) The greenhouse gas value of ecosystems. Global Change Biology. 17: 425-438

Davis SC, Parton WJ, Del Grosso SJ, Keough C, Marx E, Adler PR, and DeLucia EH (2011) Impact of second-generationa biofuel agriculture on greenhouse-gas emissions in the corn-growing regions of the US. Frontiers in Ecology and the Environment 10: 69-74

Drake JE, Davis SC, Raetz LM, and DeLucia EH (2011) Mechanisms of age-related changes in forest production: the influence of physiological and successional changes. Global Change Biology, Volume 17: 1522-1535

Drake JE, Gallet-Budynek A, Hofmockel KS, Bernhardt ES, Billings SA, Jackson RB, Johnsen KS, Lichter J, McCarthy HR, McCormack ML, Moore DP, Oren R, Palmroth S, Phillips RP, Pippen JS, Pritchard SG, Treseder KK, Schlesinger WH, DeLucia EH, Finzi AC (2011) Increases in the flux of carbon belowground stimulate nitrogen uptake and sustain the long-term enhancement of forest productivity under elevated CO2. Ecology Letters, Volume 14:349-357

Bilgin DM, Zavala JA, Zhu J, Clough SJ, Ort DR, DeLucia EH (2010) Biotic stress globally down-regulates photosynthesis genes. Plant, Cell and Environment. 33:1597-1613 doi: 10.1111/j.1365-3040.2010.02167.x)

Anderson-Teixeira KJ, Davis SC, Masters MD, DeLucia EH(2009) Changes in soil organic carbon under biofuel crops. GCB Bioenergy, 1:75-96 doi: 10.1111/j.1757-1707.2008.01001.x

Bilgin D, Aldea M,  O’Neill BF, Benitez M,  Li M, Clough S, DeLucia EH (2008) Elevated ozone alters soybean-virus interactions. Molecular Plant Microbe Interactions 21:1297-1308

Casteel CL, O’Neill BF, Zavala JA, Bilgin DD, Berenbaum MR, DeLucia EH (2008) Transcriptional profiling reveals elevated CO2 and elevated O3 alter resistance of soybean (Glycine max) to Japanese beetles (Popillia japonica). Plant, Cell and Environment 31: 419-434

DeLucia EH, Drake JE, Thomas RB, Gonzalez-Meler M (2007) Forest carbon use efficiency: is respiration a constant fraction of gross primary production? Global Change Biology 13:1157-1167

Nabity P, Zavala JA, DeLucia EH (2008) Indirect suppression of photosynthesis on individual leaves by arthropod herbivory. Annals of Botany 103:655-663

Zavala JA, Casteel CL, DeLucia EH, Berenbaum MR (2008) Anthropogenic increase in carbon dioxide compromises plant defense against invasive insects. Proceedings of the National Academy of Science USA 105:5129-5133

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Andrew D.B. Leakey (IGB Publications)

Gray SB, Strellner RS, Puthuva KK, Shulman R, Siebers MH, Rogers A, Leakey ADB (accepted for publication) Minirhizotron imaging reveals nodulation of field-grown soybean is enhanced by Free-Air CO2 Enrichment only when combined with drought stress. Functional Plant Biology    

Gillespie KM, Xu F, Richter KT, McGrath JM, Markelz RJC, Ort DR, Leakey ADB, Ainsworth EA (2012) Greater antioxidant and respiratory metabolism in field-grown soybean exposed to elevated O3 under both ambient and elevated CO2 concentrations. Plant, Cell & Environment 35: 169-184    

Leakey ADB, Lau JA(2012) Evolutionary context for understanding and manipulating plant responses to past, present and future atmospheric [CO2]. Philosophical Transactions of the Royal Society B 367: 613-629

Markelz RJC, Strellner RS, Leakey ADB (2011) Impairment of C4 photosynthesis by drought is exacerbated by limiting nitrogen and ameliorated by elevated [CO2] in maize. Journal of Experimental Botany 62:3235-3246

Edwards EJ, Osborne CP, Stromberg CAE, Smith SA, Bond WJ, Christin PA, Cousins AB, Duvall MR, Fox DL, Freckleton RP, Ghannoum O, Hartwell J, Huang Y, Janis CM, Keeley JE, Kellogg EA, Knapp AK, Leakey ADB, Nelson DM, Passey BH, Saarela JM, Sage RF, Sala OE, Salamin N, Still CJ, Tipple B (2010) The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science. Science 328: 587-591

Leakey ADB, Xu F, Gillespie K, McGrath J, AinsworthEA, Ort DR (2009) Genomic basis for stimulated respiration by plants growing under elevated carbon dioxide. Proceedings of the National Academy of Sciences 106: 3597-3602 *** This paper was highlighted on F1000***

Leakey ADB, Ainsworth EA, Bernard SM, Markelz RJC, Ort DR, Placella S, Rogers A, Smith MD, Sudderth E, Weston DJ, Wullschleger SD, Yuan S (2009) Gene expression profiling – opening the black box of plant ecosystem responses to global change Global Change Biology 15: 1201-1213

Leakey ADB (2009) Rising atmospheric carbon dioxide concentration and the future of C4 crops for food and fuel. Proceedings of the Royal Society B: Biological Sciences 276: 2333-2343

Leakey ADB, Ainsworth EA, Bernacchi CJ, Rogers A , Long SP, Ort DR (2009) Elevated CO2 effects on plant carbon, nitrogen and water relations: six important lessons from FACE. Journal of Experimental Botany 60: 2859-2876

Rogers A, Ainsworth EA, Leakey ADB (2009) Will elevated carbon dioxide concentration amplify the benefits of nitrogen fixation by legumes? Plant Physiology 151: 1009-1016.

Ainsworth EA, Leakey ADB, Ort DR, Long SP. (2008) FACE-ing the facts: Inconsistencies and interdependence among field, chamber and modeling studies of elevated [CO2] impacts on crop yield and food supply. New Phytologist 179: 1-5.

Ainsworth EA, Rogers A, Leakey ADB (2008) Targets for crop biotechnology in a future high-CO2 and high-O3 world. Plant Physiology 147: 13-19.** these authors contributed equally to this work. *** This paper was amongst the top 10 “most read” articles in Plant Physiology in November and December 2008 ***

Ainsworth EA, Beier C, Calfapietra C, Ceuleman R, Durand-Tardif M, Farquhar GD, Godbold DL, Hendrey GR, Hickler T, Kaduk J, Karnosky DR, Kimball BA, Korner C, Koornneef M, Larfarge T, Leakey ADB, Lewin KF, Long SP, Manderscheid R, McNeil DL, Mies TA, Miglietta F, Morgan JA, Nagy J, Norby RJ, Norton RM, Percy KE, Rogers A, JSoussana J-F, Stitt M, Weigel H-J and White JW (2008) Next Generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31: 1317-1324

Leakey ADB, Uribelarrea M, Ainsworth EA , Naidu SL, Rogers A, Ort DR, Long SP (2006) Photosynthesis, productivity and yield of Zea mays are not affected by open-air elevation of CO2 concentration in the absence of drought. Plant Physiology 140: 779-790

Long SP, Ainsworth EA, Leakey ADB, Nosberger J, Ort DR (2006) Food for thought: Lower than expected crop yield stimulation with rising carbon dioxide concentrations. Science 312: 1918-1921

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Stephen P. Long (IGB Publications)      

Long SP, Ainsworth EA, Leakey ADB, Nosberger J, Ort DR (2006) Food for thought: Lower-than-expected crop yield stimulation with rising CO2 concentrations, Science 312: 1918- 1921       

Somerville C, Youngs H, Taylor C, Davis SC, Long SP (2010) Feedstocks for Lignocellulosic Biofuels. Science. 329:5993, 790-792     

Zhu X-G, de Sturler E, Long SP (2007) Optimizing the distribution of resources between enzymes of carbon metabolism can dramatically increase photosynthetic rate: A numerical simulation using an evolutionary algorithm. Plant Physiology, 145:513-526

Wang D, Portis AR Jr,  Moose SP, Long SP (2008) Cool C4 Photosynthesis - Pyruvate Pi Dikinase Expression and Activity Corresponds to The Exceptional Cold Tolerance of Carbon Assimilation in Miscanthus x giganteus. Plant Physiology 148: 557-567

Heaton EA, Dohleman FG, Long SP (2008) Meeting US biofuel goals with less land: the potential of Miscanthus.Global Change Biology. 14: 2000-2014

Chen CP, Zhu XG, Long SP (2008) The effect of leaf-level spatial variability in photosynthetic capacity on biochemical parameter estimates using the Farquhar model: a theoretical approach. Plant Physiology. 148:1148-1158

Zhu XG, Long SP, Ort DR (2010) Improving Photosynthetic Efficiency for Greater Yield. Annual Review of Plant Biology. 61, 235-261

Ainsworth EA, Yendrek CR, Skoneczka JA, Long SP (2012) Accelerating yield potential in soybean: potential targets for biotechnological improvement. Plant, Cell & Environment, 35: 38-52

Dohleman FG, Long SP (2009) More Productive Than Maize in the Midwest: How Does Miscanthus Do It? Plant Physiology. 150:2104-2155

Miguez FE, Maughan M, Bollero GA, Long SP (2012) Modeling spatial and dynamic variation in growth, yield, and yield stability of the bioenergy crops Miscanthus x giganteus and Panicum virgatum across the conterminous United States. GCB Bioenergy. 4: 509- 520. DOI: 10.1111/j.1757-1707.2011.01150.x 

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Donald R. Ort (IGB Publications)

Betzelberger AM, Yendrek CR, Sun J, Leisner CP, Nelson RL, Ort DR, and Ainsworth EA (2012) Ozone exposure response for U.S. soybean cultivars:  Linear reductions in photosynthetic potential, biomass, and yield.  Plant Physiology 160:  1827-1839

Zhu XG, Song Q, and Ort DR, (2012) Elements of a dynamic systems model of canopy photosynthesis. Curr Opin Plant Biol 15: 237-244

Rosenthal DM, Slattery R, Miller R, Gleadow R, Grennan AK, Cavagnaro T, Fauquet C, and Ort DR (2012) Cassava about-FACE: greater than expected yield stimulation of cassava (Manihot esculenta) by future CO2 levels.  Global Change Biology 18: 2661-2675

Rosenthal DM and Ort DR (2012) Examining cassava's potential to enhance food security under climate change.  Tropical Plant Biology 5: 30-38

Gillespie KM, Xu F, Richter KR, McGrath JM, Markelz RJC, Ort DR, Leakey ADB, and Ainsworth EA (2011) Greater antioxidant and respiratory metabolism in field-grown soybean exposed to elevated 03 under both ambient and elevated CO2 concentrations.  Plant Cell and Environment 35: 169-184

Rosenthal DM, Locke AM, Khozaei M, Raines CA, Long SP, and Ort DR (2011)  Over-expressing the C3 photosynthesis cycle enzyme Sedoheptulose-1-7 Bisphosphatase improves photosynthetic carbon gain and yield under fully open air CO2 fumigation (FACE).  BMC Plant Biology 11: 123 DOI:  10.1186/1471-2229-11-123

Bernacchi CJ, Leakey ADB, Kimbal B, and Ort Dr (2011)  Growth of soybean at midcentury tropospheric ozone concentrations decreases canopy evapotranspiration and soil water depletion.  Environmental Pollution 159:  1464-1472

Ort DR, Zhu XG, and Melis A (2011) Optimizing antenna size to maximize photosynthetic efficiency.  Plant Physiology  155: 79-85

Feng Z, Pang J, Kabayashi K, Zhu J, and Ort DR (2011)  Differential responses in two varieties of winter wheat to elevated ozone concentration under fully open-air conditions.  Global Change Biology 17:  580-591

Long SP and Ort DR (2010)  More than taking the heat:  crops and global change.  Current Opinion in Plant Biology 13: 241-248

Ainsworth EA and Ort DR (2010)  How do we improve crop production in a warming world?  Plant Physiology 154: 526-530

Bilgin DD, Zavala JA, Zhu J, Clough SJ, Ort DR and DeLucia EH (2010)  Biotic stress globally down regulates photosynthesis genes.  Plant Cell and Environment 33:  1597-1613

Zhu X-G, Long SP, and Ort DR (2010)  Improving photosynthetic efficiency for greater yield.  Annual Reviews of Plant Biology  61:  235-261