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Carl R. Woese Institute for Genomic Biology

Where Science Meets Society

Research Areas

Chen, K. L., & Madak-Erdogan, Z. (2016). Estrogen and Microbiota Crosstalk: Should We Pay Attention? Trends in Endocrinology and Metabolism, 27(11), 752-755. DOI: 10.1016/j.tem.2016.08.001
 
Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S., & Bashir, R. (2016). On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens. RSC Advances, 6(106), 103872-103887. DOI: 10.1039/c6ra19685c
 
Bashir, R. (2016). Microcantilevers track single-cell mass. Nature Biotechnology, 34(11), 1125-11260. DOI: 10.1038/nbt.3725
 
Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., ... Fologea, D. (2016). Modeling and Analysis of Intercalant Effects on Circular DNA Conformation. ACS Nano, 10(9), 8910-8917. DOI: 10.1021/acsnano.6b04876
 
Lee, J., Abdeen, A. A., Wycislo, K. L., Fan, T. M., & Kilian, K. A. (2016). Interfacial geometry dictates cancer cell tumorigenicity. Nature Materials, 15(8), 856-862. DOI: 10.1038/nmat4610
 
Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R., & DeStefano, L. (2016). Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum. Journal of Biological Engineering, 10(1), [10]. DOI: 10.1186/s13036-016-0032-5
 
Leblanc, A. K., Mazcko, C., Brown, D. E., Koehler, J. W., Miller, A. D., Miller, C. R., ... Gilbert, M. R. (2016). Creation of an NCI comparative brain tumor consortium: Informing the translation of new knowledge from canine to human brain tumor patients. Neuro-Oncology, 18(9), 1209-1218. DOI: 10.1093/neuonc/now051
 
Peh, J., Fan, T. M., Wycislo, K. L., Roth, H. S., & Hergenrother, P. J. (2016). The combination of vemurafenib and procaspase-3 activation is synergistic in mutant BRAF melanomas. Molecular Cancer Therapeutics, 15(8), 1859-1869. DOI: 10.1158/1535-7163.MCT-16-0025
 
Mukherjee, P., Lim, S. J., Wrobel, T. P., Bhargava, R., & Smith, A. M. (2016). Measuring and Predicting the Internal Structure of Semiconductor Nanocrystals through Raman Spectroscopy. Journal of the American Chemical Society, 138(34), 10887-10896. DOI: 10.1021/jacs.6b03907
 
Pool, M., Bhargava, R., Carney, P. S., Pan, D., & Smith, A. M. (2016). Implementing a challenge-inspired undergraduate experience. In 2016 ASEE Annual Conference and Exposition. (Vol. 2016-June). American Society for Engineering Education.
Huang, Q., Peh, J., Hergenrother, P. J., & Cunningham, B. T. (2016). Porous photonic crystal external cavity laser biosensor. Applied Physics Letters, 109(7), [071103]. DOI: 10.1063/1.4961107
 
Yin, Q., Tang, L., Cai, K., Tong, R., Sternberg, R., Yang, X., ... Fan, T. M. (2016). Pamidronate functionalized nanoconjugates for targeted therapy of focal skeletal malignant osteolysis. Proceedings of the National Academy of Sciences of the United States of America, 113(32), E4601-E4609. DOI: 10.1073/pnas.1603316113
 
Lundberg, A. P., Roady, P. J., Somrak, A. J., Howes, M. E., & Fan, T. M. (2016). Zoledronate-Associated Osteonecrosis of the Jaw in a Dog with Appendicular Osteosarcoma. Journal of Veterinary Internal Medicine, 30(4), 1235-1240. DOI: 10.1111/jvim.13980
 
Byrum, M. L., Pondenis, H. C., Fredrickson, R. L., Wycislo, K. L., & Fan, T. M. (2016). Downregulation of CXCR4 Expression and Functionality After Zoledronate Exposure in Canine Osteosarcoma. Journal of Veterinary Internal Medicine, 30(4), 1187-1196. DOI: 10.1111/jvim.14257
 
Ma, L., Liu, T. W., Wallig, M. A., Dobrucki, I. T., Dobrucki, L. W., Nelson, E. R., ... Smith, A. M. (2016). Efficient Targeting of Adipose Tissue Macrophages in Obesity with Polysaccharide Nanocarriers. ACS Nano, 10(7), 6952-6962. DOI: 10.1021/acsnano.6b02878
 
Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A., & Bashir, R. (2016). On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection. Microfluidics and Nanofluidics, 20(8), [114]. DOI: 10.1007/s10404-016-1778-2
 
Reddy, B., Salm, E., & Bashir, R. (2016). Electrical Chips for Biological Point-of-Care Detection. Annual Review of Biomedical Engineering, 18, 329-355. DOI: 10.1146/annurev-bioeng-071813-104643
 
Wan, Y., Carlson, J. A., Kesler, B. A., Peng, W., Su, P., Al-Mulla, S. A., ... Cunningham, B. T. (2016). Compact characterization of liquid absorption and emission spectra using linear variable filters integrated with a CMOS imaging camera. Scientific Reports, 6, [29117]. DOI: 10.1038/srep29117
 
Raman, R., Clay, N. E., Sen, S., Melhem, M., Qin, E., Kong, H., & Bashir, R. (2016). 3D printing enables separation of orthogonal functions within a hydrogel particle. Biomedical Microdevices, 18(3), [49]. DOI: 10.1007/s10544-016-0068-9
 
Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., ... Lee, S. W. (2016). Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions. ACS Nano, 10(4), 4011-4019. DOI: 10.1021/acsnano.5b05286
 
See, G. G., Naughton, M. S., Xu, L., Nuzzo, R. G., Kenis, P. J. A., & Cunningham, B. T. (2016). Enhanced emission of quantum dots embedded within the high-index dielectric regions of photonic crystal slabs. Applied Physics Letters, 108(17), [171108]. DOI: 10.1063/1.4948379
 
Wu, H. Y., Liu, L., Lu, M., & Cunningham, B. T. (2016). Lasing Emission from Plasmonic Nanodome Arrays. Advanced Optical Materials, 4(5), 708-714. DOI: 10.1002/adom.201500669
 
Fan, T. M., Le Blanc, A. K., & Mason, N. (2016). Pet scans. Scientist, 30(4).
Cunningham, B. T., Zhang, M., Zhuo, Y., Kwon, L., & Race, C. (2016). Recent Advances in Biosensing with Photonic Crystal Surfaces: A Review. IEEE Sensors Journal, 16(10), 3349-3366. [7101794]. DOI: 10.1109/JSEN.2015.2429738
 
Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R., & Alam, M. A. (2016). Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms. Biosensors, 6(2), [14]. DOI: 10.3390/bios6020014
 
Larson, J. C., Allstadt, S. D., Fan, T. M., Khanna, C., Lunghofer, P. J., Hansen, R. J., ... Martin-Jimenez, T. (2016). Pharmacokinetics of orally administered low-dose rapamycin in healthy dogs. American Journal of Veterinary Research, 77(1), 65-71.
Mehrnezhad, A., Bashir, R., & Park, K. (2016). Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure. Applied Physics Letters, 108(11), [114101]. DOI: 10.1063/1.4944412
 
Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D., & Bashir, R. (2016). Optogenetic skeletal muscle-powered adaptive biological machines. Proceedings of the National Academy of Sciences of the United States of America, 113(13), 3497-3502. DOI: 10.1073/pnas.1516139113
 
Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G., & Bashir, R. (2016). Microfluidic differential immunocapture biochip for specific leukocyte counting. Nature Protocols, 11(4), 714-726. DOI: 10.1038/nprot.2016.038
 
Yu, H., Le, H. M., Kaale, E., Long, K. D., Layloff, T., Lumetta, S. S., & Cunningham, B. T. (2016). Characterization of drug authenticity using thin-layer chromatography imaging with a mobile phone. Journal of Pharmaceutical and Biomedical Analysis, 125, 85-93. DOI: 10.1016/j.jpba.2016.03.018
 
Corbin, E. A., Adeniba, O. O., Ewoldt, R. H., & Bashir, R. (2016). Dynamic mechanical measurement of the viscoelasticity of single adherent cells. Applied Physics Letters, 108(9), [093701]. DOI: 10.1063/1.4942364
 
Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., ... Bashir, R. (2016). High-Resolution Projection Microstereolithography for Patterning of Neovasculature. Advanced healthcare materials, 5(5), 610-619. DOI: 10.1002/adhm.201500721
 
Kwon, L., Long, K. D., Wan, Y., Yu, H., & Cunningham, B. T. (2016). Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing. Biotechnology Advances, 34(3), 291-304. DOI: 10.1016/j.biotechadv.2016.02.010
 
Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A., & Bashir, R. (2016). Magnetophoretic-based microfluidic device for DNA Concentration. Biomedical Microdevices, 18(2), 1-8. [28]. DOI: 10.1007/s10544-016-0051-5
 
Leblanc, A. K., Breen, M., Choyke, P., Dewhirst, M., Fan, T. M., Gustafson, D. L., ... Khanna, C. (2016). Perspectives from man's best friend: National academy of medicine's workshop on comparative oncology. Science Translational Medicine, 8(324), [324ps5]. DOI: 10.1126/scitranslmed.aaf0746
 
Tan, Y., Halsey, J. F., Tang, T., Wetering, S. V., Taine, E., Cleve, M. V., & Cunningham, B. T. (2016). Application of photonic crystal enhanced fluorescence to detection of low serum concentrations of human IgE antibodies specific for a purified cat allergen (Fel D1). Biosensors and Bioelectronics, 77, 194-201. DOI: 10.1016/j.bios.2015.08.071

 

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