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Illinois IGB

Research Areas

Regenerative Biology & Tissue Engineering: Publications

Louie, A. Y., Rund, L. A., Komiyama-Kasai, K. A., Weisenberger, K. E., Stanke, K. L., Larsen, R. J., Leyshon, B. J., Kuchan, M. J., Das, T., & Steelman, A. J. (2023). A hydrolyzed lipid blend diet promotes myelination in neonatal piglets in a region and concentration-dependent manner. Journal of Neuroscience Research, 101(12), 1864-1883. https://doi.org/10.1002/jnr.25243

Rogers-Lavanne, M. P., Bader, A. C., de Flamingh, A., Saboowala, S., Smythe, C., Atchison, B., Moulton, N., Wilson, A., Wildman, D. E., Boraas, A., Uddin, M., Worl, R., & Malhi, R. S. (2023). Association between gene methylation and experiences of historical trauma in Alaska Native peoples. International Journal for Equity in Health, 22(1), Article 182. https://doi.org/10.1186/s12939-023-01967-7

Leckband, D. (2023). Cadherins and growth factor receptors: Signaling mechano-switches at intercellular junctions. Current Opinion in Biomedical Engineering, 28, Article 100503. https://doi.org/10.1016/j.cobme.2023.100503

Shukla, R., Arshee, M. R., Laws, M. J., Flaws, J. A., Bagchi, M. K., Wagoner Johnson, A. J., & Bagchi, I. C. (2023). Chronic exposure of mice to phthalates enhances TGF beta signaling and promotes uterine fibrosis. Reproductive Toxicology, 122, Article 108491. https://doi.org/10.1016/j.reprotox.2023.108491

McLeod, A., Wolf, P., Chapkin, R. S., Davidson, L. A., Ivanov, I., Berbaum, M., Williams, L. R., Gaskins, H. R., Ridlon, J., Sanchez-Flack, J., Blumstein, L., Schiffer, L., Hamm, A., Cares, K., Antonic, M., Bernabe, B. P., Fitzgibbon, M., & Tussing-Humphreys, L. (2023). Design of the Building Research in CRC prevention (BRIDGE-CRC) trial: a 6-month, parallel group Mediterranean diet and weight loss randomized controlled lifestyle intervention targeting the bile acid-gut microbiome axis to reduce colorectal cancer risk among African American/Black adults with obesity. Trials, 24(1), Article 113. https://doi.org/10.1186/s13063-023-07115-4

Bashir, S. T., Redden, C. R., Raj, K., Arcanjo, R. B., Stasiak, S., Li, Q., Steelman, A. J., & Nowak, R. A. (2023). Endometriosis leads to central nervous system-wide glial activation in a mouse model of endometriosis. Journal of neuroinflammation, 20(1), Article 59. https://doi.org/10.1186/s12974-023-02713-0

Janaszak-Jasiecka, A., Płoska, A., Wierońska, J. M., Dobrucki, L. W., & Kalinowski, L. (2023). Endothelial dysfunction due to eNOS uncoupling: molecular mechanisms as potential therapeutic targets. Cellular and Molecular Biology Letters, 28(1), Article 21. https://doi.org/10.1186/s11658-023-00423-2

Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (2023). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences, 15(3), 545-561. https://doi.org/10.1007/s12561-021-09310-w

Dewey, M. J., Chang, R. S. H., Nosatov, A. V., Janssen, K., Crotts, S. J., Hollister, S. J., & Harley, B. A. C. (2023). Generative design approach to combine architected Voronoi foams with porous collagen scaffolds to create a tunable composite biomaterial. Acta Biomaterialia, 172, 249-259. https://doi.org/10.1016/j.actbio.2023.10.005

Chadha, C., He, J., Abueidda, D., Koric, S., Guleryuz, E., & Jasiuk, I. (2023). Improving the accuracy of the deep energy method. Acta Mechanica, 234(12), 5975-5998. https://doi.org/10.1007/s00707-023-03691-3

Louie, A. Y., Kim, J. S., Drnevich, J., Dibaeinia, P., Koito, H., Sinha, S., McKim, D. B., Soto-Diaz, K., Nowak, R. A., Das, A., & Steelman, A. J. (2023). Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse. Journal of neuroinflammation, 20(1), Article 190. https://doi.org/10.1186/s12974-023-02862-2

Caetano-Silva, M. E., Rund, L., Hutchinson, N. T., Woods, J. A., Steelman, A. J., & Johnson, R. W. (2023). Inhibition of inflammatory microglia by dietary fiber and short-chain fatty acids. Scientific reports, 13(1), Article 2819. https://doi.org/10.1038/s41598-022-27086-x

Emon, B., Song, Y. J., Joy, M. S. H., Kovour, M. V., Prasanth, K. V., & Saif, M. T. A. (2023). Mechanosensitive changes in the expression of genes in colorectal cancer-associated fibroblasts. Scientific Data, 10(1), Article 350. https://doi.org/10.1038/s41597-023-02233-9

Wroblewski, T. H., Witt, K. E., Lee, S., Malhi, R. S., Peede, D., Huerta-Sánchez, E., Villanea, F. A., & Claw, K. G. (2023). Pharmacogenetic variation in Neanderthals and Denisovans and implications for human health and response to medications. Genome biology and evolution, 15(12), Article evad222. https://doi.org/10.1093/gbe/evad222

Benjamin, N. R., Crooijmans, R. P. M. A., Jordan, L. R., Bolt, C. R., Schook, L. B., Schachtschneider, K. M., Groenen, M. A. M., & Roca, A. L. (2023). Swine global genomic resources: insights into wild and domesticated populations. Mammalian Genome, 34(4), 520-530. https://doi.org/10.1007/s00335-023-10012-5

Yu, Z., Moshood, Y., Wozniak, M. K., Patel, S., Terpstra, K., Llano, D. A., Dobrucki, L. W., & Mirica, L. M. (2023). Amphiphilic Molecules Exhibiting Zwitterionic Excited-State Intramolecular Proton Transfer and Near-Infrared Emission for the Detection of Amyloid β Aggregates in Alzheimer's Disease**. Chemistry - A European Journal, 29(64), Article e202302408. https://doi.org/10.1002/chem.202302408

Wu, YF., Toba, E. A. D. L., Dvoretskiy, S., Jung, R., Kim, N., Daniels, L., Romanova, E. V., Drnevich, J., Sweedler, J. V., & Boppart, M. D. (2023). Development of a cell‐free strategy to recover aged skeletal muscle after disuse. The Journal of Physiology, 601(22), 5011-5031. https://doi.org/10.1113/JP282867

Chang, R., Gruebele, M., & Leckband, D. E. (2023). Protein Folding Stability and Kinetics in Alginate Hydrogels. Biomacromolecules. https://doi.org/10.1021/acs.biomac.3c00764

Kushwaha, S., He, J., Abueidda, D., & Jasiuk, I. (2023). Designing impact-resistant bio-inspired low-porosity structures using neural networks. Journal of Materials Research and Technology, 27, 767-779. https://doi.org/10.1016/j.jmrt.2023.09.240

Lumibao, J., Haak, P., Kolossov, V., Chen, J-W., Stutchman, J., Ruiz, A., Sivaguru, M., Sarkaria, J., Harley, B., Steelman, A., & Gaskins, H. R. (2023). CHCHD2 mediates glioblastoma cell proliferation, mitochondrial metabolism, hypoxia‑induced invasion and therapeutic resistance. International journal of oncology, 63(5), Article 117. https://doi.org/10.3892/ijo.2023.5565

Kim, J. E., Lee, S., Gu, C. Y., Kim, T. S., Kong, H., & Jang, D. (2023). Mechanical Characterization of Collagen Hydrogels by Quasistatic Uniaxial Tensile Experiments. Advanced Engineering Materials, 25(21), Article 2301136. https://doi.org/10.1002/adem.202301136

Marchioretto, P. V., Rabel, R. A. C., Allen, C. A., Ole-Neselle, M. M. B., & Wheeler, M. B. (2023). Development of genetically improved tropical-Adapted dairy cattle. Animal Frontiers, 13(5), 7-15. https://doi.org/10.1093/af/vfad050

He, J., Koric, S., Kushwaha, S., Park, J., Abueidda, D., & Jasiuk, I. (2023). Novel DeepONet architecture to predict stresses in elastoplastic structures with variable complex geometries and loads. Computer Methods in Applied Mechanics and Engineering, 415, Article 116277. https://doi.org/10.1016/j.cma.2023.116277

Lazarus, B. S., Luu, R. K., Ruiz-Pérez, S., Barbosa, J. D. V., Jasiuk, I., & Meyers, M. A. (2023). Equine Hoof Wall Deformation: Novel Aspects Revealed. Small Structures, 4(10), Article 2200402. https://doi.org/10.1002/sstr.202200402

Roberts, M. D., McCarthy, J. J., Hornberger, T. A., Phillips, S. M., Mackey, A. L., Nader, G. A., Boppart, M. D., Kavazis, A. N., Reidy, P. T., Ogasawara, R., Libardi, C. A., Ugrinowitsch, C., Booth, F. W., & Esser, K. A. (2023). Mechanisms of mechanical overload-induced skeletal muscle hypertrophy: current understanding and future directions. Physiological Reviews, 103(4), 2679-2757. https://doi.org/10.1152/physrev.00039.2022

Applegate, C. C., Nelappana, M. B., Nielsen, E. A., Kalinowski, L., Dobrucki, I. T., & Dobrucki, L. W. (2023). RAGE as a Novel Biomarker for Prostate Cancer: A Systematic Review and Meta-Analysis. Cancers, 15(19), Article 4889. https://doi.org/10.3390/cancers15194889

Su, Z., Vu, V. H., Leckband, D. E., & Wu, Y. (2023). A computational study for understanding the impact of p120-catenin on the cis-dimerization of cadherin. Journal of Molecular Cell Biology. Advance online publication. https://doi.org/10.1093/jmcb/mjad055

Deng, Y. H., Jeon, J., Kim, E. M., Ding, S., Lee, S. A., Ryu, C., Kim, Y. J., Su, X., & Kong, H. (2023). In situ immobilization of δ-MnO2 nanosheets on a porous support for rapid and continuous cleaning of bisphenol A-spiked water. Chemical Engineering Journal, 472, Article 144653. https://doi.org/10.1016/j.cej.2023.144653

Miller, R. C., Lee, J., Kim, Y. J., Han, H. S., & Kong, H. (2023). In-Drop Thermal Cycling of Microcrystal Assembly for Senescence Control with Minimal Variation in Efficacy. Advanced Functional Materials, 33(37), Article 2302232. https://doi.org/10.1002/adfm.202302232

Schreier, M., Kenis, P., Che, F., & Hall, A. S. (2023). Trends in Electrocatalysis: The Microenvironment Moves to Center Stage. ACS Energy Letters, 8(9), 3935-3940. https://doi.org/10.1021/acsenergylett.3c01623

Bo, Y., Zhou, J., Cai, K., Wang, Y., Feng, Y., Li, W., Jiang, Y., Kuo, S. H., Roy, J., Anorma, C., Gardner, S. H., Luu, L. M., Lau, G. W., Bao, Y., Chan, J., Wang, H., & Cheng, J. (2023). Leveraging intracellular ALDH1A1 activity for selective cancer stem-like cell labeling and targeted treatment via in vivo click reaction. Proceedings of the National Academy of Sciences of the United States of America, 120(36), Article e2302342120. https://doi.org/10.1073/pnas.2302342120

Mahrous, M. A., Chadha, C., Robins, P. L., Bonney, C., Boateng, K. A., Meyers, M., & Jasiuk, I. (2023). Multimodule imaging of the hierarchical equine hoof wall porosity and structure. Journal of Materials Research and Technology, 26, 5535-5548. https://doi.org/10.1016/j.jmrt.2023.08.246

Yerrabelli, R. S., Palsgaard, P. K., Hojati, A., & Wagoner Johnson, A. J. (2023). Improving visualization of the cervix during pelvic exams: A simulation using a physical model of the speculum and human vagina as a steppingstone to reducing disparities in gynecological cancers. PloS one, 18(9 September), Article e0283145. https://doi.org/10.1371/journal.pone.0283145

Kolliopoulos, V., Polanek, M., Xu, H., & Harley, B. (2023). Inflammatory Licensed hMSCs Exhibit Enhanced Immunomodulatory Capacity in a Biomaterial Mediated Manner. ACS Biomaterials Science and Engineering, 9(8), 4916-4928. https://doi.org/10.1021/acsbiomaterials.3c00290

Pang, S., & Jasiuk, I. (2023). Correlation between reference point indentation and mechanical properties of 3D-printed polymers. Review of Scientific Instruments, 94(8), Article 085118. https://doi.org/10.1063/5.0149701

Bader, A. C., Carbaugh, A. E., Davis, J. L., Krupa, K., & Malhi, R. S. (2023). Biological samples taken from Native American Ancestors are human remains under NAGPRA. American Journal of Biological Anthropology, 181(4), 527-534. https://doi.org/10.1002/ajpa.24726

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2023). Corrigendum to “Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter” [J. Archaeol. Sci. 105 (2019) 11–18, (S0305440318305661), (10.1016/j.jas.2019.02.006)]. Journal of Archaeological Science, 156, Article 105801. https://doi.org/10.1016/j.jas.2023.105801

Cosgriff-Hernandez, E. M., Aguado, B. A., Akpa, B., Fleming, G. C., Moore, E., Porras, A. M., Boyle, P. M., Chan, D. D., Chesler, N., Christman, K. L., Desai, T. A., Harley, B. A. C., Hudalla, G. A., Killian, M. L., Maisel, K., Maitland, K. C., Peyton, S. R., Pruitt, B. L., Stabenfeldt, S. E., ... Bowden, A. K. (2023). Equitable hiring strategies towards a diversified faculty. Nature biomedical engineering, 7(8), 961-968. https://doi.org/10.1038/s41551-023-01076-4

Kuzminsky, J., Phillips, H., Sharif, H., Moran, C., Gleason, H. E., Topulos, S. P., Pitt, K., McNeil, L. K., McCoy, A. M., & Kesavadas, T. (2023). Reliability in performance assessment creates a potential application of artificial intelligence in veterinary education: evaluation of suturing skills at a single institution. American journal of veterinary research, 84(8). https://doi.org/10.2460/ajvr.23.03.0058

Ridlon, J. M., Daniel, S. L., & Gaskins, H. R. (2023). The Hylemon-Björkhem pathway of bile acid 7-dehydroxylation: history, biochemistry, and microbiology. Journal of Lipid Research, 64(8), Article 100392. https://doi.org/10.1016/j.jlr.2023.100392

Spitzer, A. R., & Hutchens, S. B. (2023). Deformation-dependent polydimethylsiloxane permeability measured using osmotic microactuators. Soft Matter, 19(31), 6005-6017. https://doi.org/10.1039/D2SM01666D

Ren, X., Zhou, Q., Bedar, M., Foulad, D., Huang, K. X., Dejam, D., Dahan, N. J., Kolliopoulos, V., Harley, B. A. C., & Lee, J. C. (2023). Modulating Temporospatial Phosphate Equilibrium by Nanoparticulate Mineralized Collagen Materials Induces Osteogenesis via PiT-1 and PiT-2. Advanced Healthcare Materials, 12(17), Article 2202750. https://doi.org/10.1002/adhm.202202750

Rabel, R. A. C., Marchioretto, P. V., Bangert, E. A., Wilson, K., Milner, D. J., & Wheeler, M. B. (2023). Pre-Implantation Bovine Embryo Evaluation—From Optics to Omics and Beyond. Animals, 13(13), Article 2102. https://doi.org/10.3390/ani13132102

Biddinger, E. J., & Kenis, P. J. A. (2023). Current and Emerging Electrochemical Approaches for Chemical Manufacturing. Electrochemical Society Interface, 32(2), 41-45. https://doi.org/10.1149/2.F08232IF

Sun, J., Chen, J., Amar, K., Wu, Y., Jiang, M., & Wang, N. (2023). LAP2β transmits force to upregulate genes via chromatin domain stretching but not compression. Acta Biomaterialia, 163, 326-338. https://doi.org/10.1016/j.actbio.2021.10.029

Babaei, S., Dai, B., Abbey, C. K., Ambreen, Y., Dobrucki, W. L., & Insana, M. F. (2023). Monitoring Muscle Perfusion in Rodents During Short-Term Ischemia Using Power Doppler Ultrasound. Ultrasound in Medicine and Biology, 49(6), 1465-1475. https://doi.org/10.1016/j.ultrasmedbio.2023.02.013

He, J., Kushwaha, S., Mahrous, M. A., Abueidda, D., Faierson, E., & Jasiuk, I. (2023). Size-dependence of AM Ti–6Al–4V: Experimental characterization and applications in thin-walled structures simulations. Thin-Walled Structures, 187, Article 110722. https://doi.org/10.1016/j.tws.2023.110722

Aqil, A., Gill, S., Gokcumen, O., Malhi, R. S., Reese, E. A., Smith, J. L., Heaton, T. T., & Lindqvist, C. (2023). A paleogenome from a Holocene individual supports genetic continuity in Southeast Alaska. iScience, 26(5), Article 106581. https://doi.org/10.1016/j.isci.2023.106581

Stanke, K. L., Larsen, R. J., Rund, L., Leyshon, B. J., Louie, A. Y., & Steelman, A. J. (2023). Automated identification of piglet brain tissue from MRI images using Region-based Convolutional Neural Networks. PloS one, 18(5), Article e0284951. https://doi.org/10.1371/journal.pone.0284951

Ryoo, H., & Underhill, G. H. (2023). Spatially Defined Cell-Secreted Protein Detection Using Granular Hydrogels: μGeLISA. ACS Biomaterials Science and Engineering, 9(5), 2317-2328. https://doi.org/10.1021/acsbiomaterials.2c01308

George, M. B., Lew, B., Blair, S., Zhu, Z., Liang, Z., Srivastava, I., Chang, A., Choi, H., Kim, K., Nie, S., Singhal, S., & Gruev, V. (2023). Bioinspired color-near infrared endoscopic imaging system for molecular guided cancer surgery. Journal of biomedical optics, 28(5), Article 056002. https://doi.org/10.1117/1.JBO.28.5.056002

Gleason, H. E., Phillips, H., Fries, R., Keating, S., Hamel, P., & McCoy, A. (2023). Ala vestibuloplasty improves cardiopulmonary and activity-related parameters in brachycephalic cats. Veterinary Surgery, 52(4), 575-586. https://doi.org/10.1111/vsu.13948

Zhang, Y., Cui, J., Chen, K-Y., Kuo, S. H., Sharma, J., Bhatta, R., Liu, Z., Ellis-Mohr, A., An, F., Li, J., Chen, Q., Foss, K. D., Wang, H., Li, Y., McCoy, A. M., Lau, G. W., & Cao, Q. (2023). A smart coating with integrated physical antimicrobial and strain-mapping functionalities for orthopedic implants. Science Advances, 9(18), eadg7397. https://doi.org/10.1126/sciadv.adg7397

Song, A., Phillips, H., Oliveira, C. R., & McCoy, A. M. (2023). CT volumetric analysis permits comparison of tongue size and tongue fat in different canine brachycephalic and mesaticephalic breeds. Veterinary Radiology and Ultrasound, 64(3), 429-438. https://doi.org/10.1111/vru.13221

Paulussen, K. JM., Barnes, T. M., Askow, A. T., Salvador, A. F., McKenna, C. F., Scaroni, S. E., Fliflet, A., Ulanov, A. V., Li, Z., West, D. WD., Bauer, L. L., Paluska, S. A., Dilger, R. N., Moore, D. R., Boppart, M. D., & Burd, N. A. (2023). Underpinning the Food Matrix Regulation of Postexercise Myofibrillar Protein Synthesis by Comparing Salmon Ingestion With the Sum of Its Isolated Nutrients in Healthy Young Adults. Journal of Nutrition, 153(5), 1359-1372. https://doi.org/10.1016/j.tjnut.2023.02.037

Phillips, H. (2023). Urinary tract trauma. In Small Animal Soft Tissue Surgery (pp. 589-604). Wiley. https://doi.org/10.1002/9781119693741.ch49

Kowal, E., Weyrich, L. S., Argüelles, J. M., Bader, A. C., Colwell, C., Cortez, A. D., Davis, J. L., Figueiro, G., Fox, K., Malhi, R. S., Matisoo-Smith, E., Nayak, A., Nelson, E. A., Nicholas, G., Nieves-Colón, M. A., Russell, L., Ulm, S., Vergara-Silva, F., Villanea, F. A., ... Tsosie, K. S. (2023). Community partnerships are fundamental to ethical ancient DNA research. Human Genetics and Genomics Advances, 4(2), Article 100161. https://doi.org/10.1016/j.xhgg.2022.100161

de Flamingh, A., Rivera-Colón, A. G., Gnoske, T. P., Kerbis Peterhans, J. C., Catchen, J., Malhi, R. S., & Roca, A. L. (2023). Numt Parser: automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera. Journal of Heredity, 114(2), 120-130. Article esac065. https://doi.org/10.1093/jhered/esac065

Lee, K. Y., Rhodes, J. S., & Saif, M. T. A. (2023). Astrocyte-mediated Transduction of Muscle Fiber Contractions Synchronizes Hippocampal Neuronal Network Development. Neuroscience, 515, 25-36. https://doi.org/10.1016/j.neuroscience.2023.01.028

Ostadi Moghaddam, A., Arshee, M. R., Lin, Z., Sivaguru, M., Phillips, H., McFarlin, B. L., Toussaint, K. C., & Wagoner Johnson, A. J. (2023). An indentation-based framework for probing the glycosaminoglycan-mediated interactions of collagen fibrils. Journal of the Mechanical Behavior of Biomedical Materials, 140, Article 105726. https://doi.org/10.1016/j.jmbbm.2023.105726

He, J., Chadha, C., Kushwaha, S., Koric, S., Abueidda, D., & Jasiuk, I. (2023). Deep energy method in topology optimization applications. Acta Mechanica, 234(4), 1365-1379. https://doi.org/10.1007/s00707-022-03449-3

Mavropalias, G., Boppart, M., Usher, K. M., Grounds, M. D., Nosaka, K., & Blazevich, A. J. (2023). Exercise builds the scaffold of life: muscle extracellular matrix biomarker responses to physical activity, inactivity, and aging. Biological Reviews, 98(2), 481-519. https://doi.org/10.1111/brv.12916

Gleason, H. E., Phillips, H., & McCoy, A. M. (2023). Influence of feline brachycephaly on respiratory, gastrointestinal, sleep, and activity abnormalities. Veterinary Surgery, 52(3), 435-445. https://doi.org/10.1111/vsu.13931

Rashid, F., Liu, W., Wang, Q., Ji, B., Irudayaraj, J., & Wang, N. (2023). Mechanomemory in protein diffusivity of chromatin and nucleoplasm after force cessation. Proceedings of the National Academy of Sciences, 120(13), Article e2221432120. https://doi.org/10.1073/pnas.2221432120

Ostadi Moghaddam, A., Arshee, M. R., Lin, Z., Sivaguru, M., Phillips, H., McFarlin, B. L., Toussaint, K. C., & Wagoner Johnson, A. J. (2023). Orientation-dependent indentation reveals the crosslink-mediated deformation mechanisms of collagen fibrils. Acta Biomaterialia, 158, 347-357. https://doi.org/10.1016/j.actbio.2023.01.005

He, J., Abueidda, D., Abu Al-Rub, R., Koric, S., & Jasiuk, I. (2023). A deep learning energy-based method for classical elastoplasticity. International journal of plasticity, 162, Article 103531. https://doi.org/10.1016/j.ijplas.2023.103531

Chen, X., Kandel, M. E., He, S., Hu, C., Lee, Y. J., Sullivan, K., Tracy, G., Chung, H. J., Kong, H. J., Anastasio, M., & Popescu, G. (2023). Artificial confocal microscopy for deep label-free imaging. Nature Photonics, 17(3), 250-258. https://doi.org/10.1038/s41566-022-01140-6

Dewey, M. J., Collins, A. J., Tiffany, A., Barnhouse, V. R., Lu, C., Kolliopoulos, V., Mutreja, I., Hickok, N. J., & Harley, B. A. C. (2023). Evaluation of bacterial attachment on mineralized collagen scaffolds and addition of manuka honey to increase mesenchymal stem cell osteogenesis. Biomaterials, 294, Article 122015. https://doi.org/10.1016/j.biomaterials.2023.122015

He, J., Kushwaha, S., Abueidda, D., & Jasiuk, I. (2023). Exploring the structure-property relations of thin-walled, 2D extruded lattices using neural networks. Computers and Structures, 277-278, Article 106940. https://doi.org/10.1016/j.compstruc.2022.106940

He, J., Abueidda, D., Koric, S., & Jasiuk, I. (2023). On the use of graph neural networks and shape‐function‐based gradient computation in the deep energy method. International Journal for Numerical Methods in Engineering, 124(4), 864-879. https://doi.org/10.1002/nme.7146

Harley, B. A. C., Lu, Y., Cunningham, B. T., Zhuo, Y., Choi, J. S., Marin, T., & Singamaneni, S. (2023). Photonic Resonator Absorption Microscopy (pram) For Digital Resolution Biomolecular Diagnostics. (U.S. Patent No. 11591640).

Ho, N. C., Hollister, S. J., Agrawal, V., Flanagan, C. L., Lee, C., Wheeler, M. B., Wang, H., Ebramzadeh, E., & Sangiorgio, S. N. (2023). Evaluation of Topology Optimization Using 3D Printing for Bioresorbable Fusion Cages: A Biomechanical Study in a Porcine Model. Spine, 48(4), E46-E53. https://doi.org/10.1097/BRS.0000000000004491

Sinclair, W. E., Pawate, A. S., Larry, TN. N. A., Schieferstein, J. M., Whittenberg, J. J., Leckband, D. E., & Kenis, P. J. A. (2023). Development of microfluidic platform that enables ‘on-chip’ imaging of cells exposed to shear stress and cyclic stretch. Microfluidics and Nanofluidics, 27(2), Article 11. https://doi.org/10.1007/s10404-022-02619-y

Ren, X., Dejam, D., Oberoi, M. K., Dahan, N. J., Zhou, Q., Huang, K. X., Bedar, M., Chan, C. H., Kolliopoulos, V., Dewey, M. J., Harley, B. A. C., & Lee, J. C. (2023). Osteoprotegerin-eluting nanoparticulate mineralized collagen scaffolds improve skull regeneration. Biomaterials Advances, 145, Article 213262. https://doi.org/10.1016/j.bioadv.2022.213262

Kim, J. S., Soto-Diaz, K., Bingham, T. W., Steelman, A. J., & Das, A. (2023). Role of omega-3 endocannabinoids in the modulation of T-cell activity in a multiple sclerosis experimental autoimmune encephalomyelitis (EAE) model. Journal of Biological Chemistry, 299(2), Article 102886. https://doi.org/10.1016/j.jbc.2023.102886

Bhatta, R., Han, J., Liu, Y., Bo, Y., & Wang, H. (2023). T cell-responsive macroporous hydrogels for in situ T cell expansion and enhanced antitumor efficacy. Biomaterials, 293, Article 121972. https://doi.org/10.1016/j.biomaterials.2022.121972

Mohagheghian, E., Luo, J., Yavitt, F. M., Wei, F., Bhala, P., Amar, K., Rashid, F., Wang, Y., Liu, X., Ji, C., Chen, J., Arnold, D. P., Liu, Z., Anseth, K. S., & Wang, N. (2023). Quantifying stiffness and forces of tumor colonies and embryos using a magnetic microrobot. Science Robotics, 8(74), eadc9800. https://doi.org/10.1126/scirobotics.adc9800

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de Flamingh, A., Ishida, Y., Pečnerová, P., Vilchis, S., Siegismund, H. R., Van aarde, R. J., Malhi, R. S., & Roca, A. L. (2023). Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology. Frontiers in Genetics, 13, Article 1021004. https://doi.org/10.3389/fgene.2022.1021004

Valat, A., Fourel, L., Sales, A., Machillot, P., Bouin, A. P., Fournier, C., Bosc, L., Arboléas, M., Bourrin-Reynard, I., Wagoner Johnson, A. J., Bruckert, F., Albigès-Rizo, C., & Picart, C. (2023). Interplay between integrins and cadherins to control bone differentiation upon BMP-2 stimulation. Frontiers in Cell and Developmental Biology, 10, Article 1027334. https://doi.org/10.3389/fcell.2022.1027334

Liu, Y., Adu-Berchie, K., Brockman, J. M., Pezone, M., Zhang, D. K. Y., Zhou, J., Pyrdol, J. W., Wang, H., Wucherpfennig, K. W., & Mooney, D. J. (2023). Cytokine conjugation to enhance T cell therapy. Proceedings of the National Academy of Sciences of the United States of America, 120(1), Article e2213222120. https://doi.org/10.1073/pnas.2213222120

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Płoska, A., Wozniak, M., Hedhli, J., Konopka, C. J., Skondras, A., Matatov, S., Stawarz, A., Schuh, S., Czerwinski, A., Dobrucki, L. W., Kalinowski, L., & Dobrucki, I. T. (2023). In Vitro and In Vivo Imaging-Based Evaluation of Doxorubicin Anticancer Treatment in Combination with the Herbal Medicine Black Cohosh. International journal of molecular sciences, 24(24). https://doi.org/10.3390/ijms242417506

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Kolitha, B. S., Jayasekara, S. K., Tannenbaum, R., Jasiuk, I. M., & Jayakody, L. N. (2023). Repurposing of waste PET by microbial biotransformation to functionalized materials for additive manufacturing. Journal of Industrial Microbiology and Biotechnology, 50(1), Article kuad010. https://doi.org/10.1093/jimb/kuad010

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Shiang, C. S., Bonney, C., Lazarus, B., Meyers, M., & Jasiuk, I. (2022). Hierarchical modeling of elastic moduli of equine hoof wall. Journal of the Mechanical Behavior of Biomedical Materials, 136, [105529]. https://doi.org/10.1016/j.jmbbm.2022.105529

Najibi, A. J., Shih, T. Y., Zhang, D. K. Y., Lou, J., Sobral, M. C., Wang, H., Dellacherie, M. O., Adu-Berchie, K., & Mooney, D. J. (2022). Targeting tumor extracellular matrix activates the tumor-draining lymph nodes. Cancer Immunology, Immunotherapy, 71(12), 2957-2968. https://doi.org/10.1007/s00262-022-03212-6

Kolliopoulos, V., Dewey, M. J., Polanek, M., Xu, H., & Harley, B. A. C. (2022). Amnion and chorion matrix maintain hMSC osteogenic response and enhance immunomodulatory and angiogenic potential in a mineralized collagen scaffold. Frontiers in Bioengineering and Biotechnology, 10, [1034701]. https://doi.org/10.3389/fbioe.2022.1034701

Ngo, M. T., Sarkaria, J. N., & Harley, B. A. C. (2022). Perivascular Stromal Cells Instruct Glioblastoma Invasion, Proliferation, and Therapeutic Response within an Engineered Brain Perivascular Niche Model. Advanced Science, 9(31), [2201888]. https://doi.org/10.1002/advs.202201888

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He, J., Kushwaha, S., Abueidda, D., & Jasiuk, I. (2022). LatticeOPT: a heuristic topology optimization framework for thin-walled, 2D extruded lattices. Structural and Multidisciplinary Optimization, 65(11), [308]. https://doi.org/10.1007/s00158-022-03397-5

Monckton, C. P., Brougham-Cook, A., Underhill, G. H., & Khetani, S. R. (2022). Modulation of human iPSC-derived hepatocyte phenotype via extracellular matrix microarrays. Acta Biomaterialia, 153, 216-230. https://doi.org/10.1016/j.actbio.2022.09.013

Cofell, E. R., Park, Z., Nwabara, U. O., Harris, L. C., Bhargava, S. S., Gewirth, A. A., & Kenis, P. J. A. (2022). Potential Cycling of Silver Cathodes in an Alkaline CO2Flow Electrolyzer for Accelerated Stress Testing and Carbonate Inhibition. ACS Applied Energy Materials, 5(10), 12013-12021. https://doi.org/10.1021/acsaem.2c01308

Liu, Y., Han, J., Bo, Y., Bhatta, R., & Wang, H. (2022). Targeted delivery of liposomal chemoimmunotherapy for cancer treatment. Frontiers in immunology, 13, [1010021]. https://doi.org/10.3389/fimmu.2022.1010021

Kim, K., & Choi, H. (2022). Capsules With Intracapsular Microspheres For Improved Survival And Function Of Encapsulated Cells. (U.S. Patent No. 11471419).

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Tiffany, A. S., & Harley, B. A. C. (2022). Growing Pains: The Need for Engineered Platforms to Study Growth Plate Biology. Advanced Healthcare Materials, 11(19), [2200471]. https://doi.org/10.1002/adhm.202200471

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Rezapourian, M., Kamboj, N., Jasiuk, I., & Hussainova, I. (2022). Biomimetic design of implants for long bone critical-sized defects. Journal of the Mechanical Behavior of Biomedical Materials, 134, [105370]. https://doi.org/10.1016/j.jmbbm.2022.105370

Chadha, C., James, K., Jasiuk, I. M., & Patterson, A. E. (2022). Extending the Operating Life of Thermoplastic Components via On-Demand Patching and Repair Using Fused Filament Fabrication. Journal of Manufacturing and Materials Processing, 6(5), [103]. https://doi.org/10.3390/jmmp6050103

Han, J., Park, J., Bhatta, R., Liu, Y., Bo, Y., Zhou, J., & Wang, H. (2022). A double crosslinking adhesion mechanism for developing tough hydrogel adhesives. Acta Biomaterialia, 150, 199-210. https://doi.org/10.1016/j.actbio.2022.07.028

Kong, X., Kapustka, A., Sullivan, B., Schwarz, G. J., & Leckband, D. E. (2022). Extracellular matrix regulates force transduction at VE-cadherin junctions. Molecular biology of the cell, 33(11), [ar95]. https://doi.org/10.1091/mbc.E22-03-0075

Zambuto, S. G., Jain, I., Clancy, K. B. H., Underhill, G. H., & Harley, B. A. C. (2022). Role of Extracellular Matrix Biomolecules on Endometrial Epithelial Cell Attachment and Cytokeratin 18 Expression on Gelatin Hydrogels. ACS Biomaterials Science and Engineering, 8(9), 3819-3830. https://doi.org/10.1021/acsbiomaterials.2c00247

Miller, R., Kim, Y., Park, C. G., Torres, C., Kim, B., Lee, J., Flaherty, D., Han, H. S., Kim, Y. J., & Kong, H. J. (2022). Extending the Bioavailability of Hydrophilic Antioxidants for Metal Ion Detoxification via Crystallization with Polysaccharide Dopamine. ACS Applied Materials and Interfaces, 14(35), 39759-39774. https://doi.org/10.1021/acsami.2c08889

Pastrana-Otero, I., Majumdar, S., Gilchrist, A. E., Harley, B. A. C., & Kraft, M. L. (2022). Identification of the Differentiation Stages of Living Cells from the Six Most Immature Murine Hematopoietic Cell Populations by Multivariate Analysis of Single-Cell Raman Spectra. Analytical Chemistry, 94(35), 11999-12007. https://doi.org/10.1021/acs.analchem.2c00714

Wilson, S. M., Oba, P. M., Koziol, S. A., Applegate, C. C., Soto-Diaz, K., Steelman, A. J., Panasevich, M. R., Norton, S. A., & Swanson, K. S. (2022). Effects of a Saccharomyces cerevisiae fermentation product-supplemented diet on circulating immune cells and oxidative stress markers of dogs. Journal of animal science, 100(9), [skac245]. https://doi.org/10.1093/jas/skac245

Bo, Y., & Wang, H. (2022). Materials‐based vaccines for infectious diseases. Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology, 14(5), [e1824]. https://doi.org/10.1002/wnan.1824

Levenstein, M. A., Gysbers, D. J., Marhaver, K. L., Kattom, S., Tichy, L., Quinlan, Z., Tholen, H. M., Kelly, L. W., Vermeij, M. J. A., Wagoner Johnson, A. J., & Juarez, G. (2022). Millimeter-scale topography facilitates coral larval settlement in wave-driven oscillatory flow. PloS one, 17(9 September), [e0274088]. https://doi.org/10.1371/journal.pone.0274088

Han, J., Bhatta, R., Liu, Y., Bo, Y., & Wang, H. (2022). In Situ Dendritic Cell Recruitment and T Cell Activation for Cancer Immunotherapy. Frontiers in Pharmacology, 13, [954955]. https://doi.org/10.3389/fphar.2022.954955

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Yang, Q., Liu, T. L., Xue, Y., Wang, H., Xu, Y., Emon, B., Wu, M., Rountree, C., Wei, T., Kandela, I., Haney, C. R., Brikha, A., Stepien, I., Hornick, J., Sponenburg, R. A., Cheng, C., Ladehoff, L., Chen, Y., Hu, Z., ... Rogers, J. A. (2022). Ecoresorbable and bioresorbable microelectromechanical systems. Nature Electronics, 5(8), 526-538. https://doi.org/10.1038/s41928-022-00791-1

Ko, E., Aydin, O., Li, Z., Gapinske, L., Huang, K. Y., Saif, T., Bashir, R., & Kong, H. (2022). Empowering engineered muscle in biohybrid pump by extending connexin 43 duration with reduced graphene oxides. Biomaterials, 287, [121643]. https://doi.org/10.1016/j.biomaterials.2022.121643

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Vesto, R., Choi, H., & Kim, K. (2022). Observation of bandgap closing in Srx Ba1- x BiO3films: Evidence toward topological order in BaBiO3. Journal of Applied Physics, 132(1), [015102]. https://doi.org/10.1063/5.0094378

Lew, B., George, M., Blair, S., Zhu, Z., Liang, Z., Ludwig, J., Kim, C. Y., Kim, K., Gruev, V., & Choi, H. (2022). Protease-activated indocyanine green nanoprobes for intraoperative NIR fluorescence imaging of primary tumors. Nanoscale Advances, 4(19), 4041-4050. https://doi.org/10.1039/d2na00276k

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Louie, A. Y., Tingling, J., Dray, E., Hussain, J., McKim, D. B., Swanson, K. S., & Steelman, A. J. (2022). Dietary Cholesterol Causes Inflammatory Imbalance and Exacerbates Morbidity in Mice Infected with Influenza A Virus. Journal of Immunology, 208(11), 2523-2539. https://doi.org/10.4049/jimmunol.2100927

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Berent, Z. T., Jain, I., Underhill, G. H., & Wagoner Johnson, A. J. (2022). Simulated confluence on micropatterned substrates correlates responses regulating cellular differentiation. Biotechnology and bioengineering, 119(6), 1641-1659. https://doi.org/10.1002/bit.28069

Yang, L., Park, J., Chaney, E. J., Sorrells, J. E., Marjanovic, M., Phillips, H., Spillman, D. R., & Boppart, S. A. (2022). Label-free multimodal nonlinear optical imaging of needle biopsy cores for intraoperative cancer diagnosis. Journal of biomedical optics, 27(5), [056504]. https://doi.org/10.1117/1.JBO.27.5.056504

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Gilchrist, A. E., & Harley, B. A. C. (2022). Engineered Tissue Models to Replicate Dynamic Interactions within the Hematopoietic Stem Cell Niche. Advanced Healthcare Materials, 11(7), [2102130]. https://doi.org/10.1002/adhm.202102130

Spencer, T. E., Wells, K. D., Lee, K., Telugu, B. P., Hansen, P. J., Bartol, F. F., Blomberg, L., Schook, L. B., Dawson, H., Lunney, J. K., Driver, J. P., Davis, T. A., Donovan, S. M., Dilger, R. N., Saif, L. J., Moeser, A., McGill, J. L., Smith, G., & Ireland, J. J. (2022). Future of biomedical, agricultural, and biological systems research using domesticated animals. Biology of reproduction, 106(4), 629-638. https://doi.org/10.1093/biolre/ioac019

Li, Z., Balance, W. C., Joy, M. S. H., Patel, S., Hwang, J., Kong, H., & Saif, M. T. A. (2022). Adaptive biohybrid pumping machine with flow loop feedback. Biofabrication, 14(2), [025009]. https://doi.org/10.1088/1758-5090/ac4d19

Zambuto, S. G., Rattila, S., Dveksler, G., & Harley, B. A. C. (2022). Effects of Pregnancy-Specific Glycoproteins on Trophoblast Motility in Three-Dimensional Gelatin Hydrogels. Cellular and Molecular Bioengineering, 15(2), 175-191. https://doi.org/10.1007/s12195-021-00715-7

Chen, J. W. E., Leary, S., Barnhouse, V., Sarkaria, J. N., & Harley, B. A. C. (2022). Matrix Hyaluronic Acid and Hypoxia Influence a CD133+Subset of Patient-Derived Glioblastoma Cells. Tissue Engineering - Part A, 28(7-8), 330-340. https://doi.org/10.1089/ten.tea.2021.0117

Wu, Y. F., Lapp, S., Dvoretskiy, S., Garcia, G., Kim, M., Tannehill, A., Daniels, L., & Boppart, M. D. (2022). Optimization of a pericyte therapy to improve muscle recovery after limb immobilization. Journal of Applied Physiology, 132(4), 1020-1030. https://doi.org/10.1152/japplphysiol.00700.2021

Park, C. G., Ryu, C. S., Sung, B., Manz, A., Kong, H., & Kim, Y. J. (2022). Transcriptomic and physiological analysis of endocrine disrupting chemicals Impacts on 3D Zebrafish liver cell culture system. Aquatic Toxicology, 245, [106105]. https://doi.org/10.1016/j.aquatox.2022.106105

Patterson, A. E., Chadha, C., & Jasiuk, I. M. (2022). Manufacturing process-driven structured materials (MPDSMs): design and fabrication for extrusion-based additive manufacturing. Rapid Prototyping Journal, 28(4), 716-731. https://doi.org/10.1108/RPJ-04-2021-0072

Levenstein, M. A., Marhaver, K. L., Quinlan, Z. A., Tholen, H. M., Tichy, L., Yus, J., Lightcap, I., Wegley Kelly, L., Juarez, G., Vermeij, M. J. A., & Wagoner Johnson, A. J. (2022). Composite Substrates Reveal Inorganic Material Cues for Coral Larval Settlement. ACS Sustainable Chemistry and Engineering, 10(12), 3960-3971. https://doi.org/10.1021/acssuschemeng.1c08313

Wu, YF., Toba, E. A. D. L., Dvoretskiy, S., Jung, R., Kim, N., Daniels, L., Romanova, E. V., Drnevich, J., Sweedler, J. V., & Boppart, M. D. (Accepted/In press). Development of a cell‐free strategy to recover aged skeletal muscle after disuse. The Journal of Physiology. https://doi.org/10.1113/JP282867

Bak, T., Jasiuk, I., Sigmund, W. M., Yamawaki, M., & Nowotny, J. (2022). Defect Chemistry of Titanium Dioxide: Evidence of the n-p Transition during Cooling. Journal of Physical Chemistry C, 126(10), 5014-5021. https://doi.org/10.1021/acs.jpcc.1c09938

Vailati-Riboni, M., Rund, L., Caetano-Silva, M. E., Hutchinson, N. T., Wang, S. S., Soto-Díaz, K., Woods, J. A., Steelman, A. J., & Johnson, R. W. (2022). Dietary Fiber as a Counterbalance to Age-Related Microglial Cell Dysfunction. Frontiers in Nutrition, 9, [835824]. https://doi.org/10.3389/fnut.2022.835824

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