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Research Areas

Gene Networks in Neural & Developmental Plasticity: Publications

Bush, D. S., Demkovich, M., Aldunate, M., Siegel, J., & Berenbaum, M. R. (2023). Kaolin as a management alternative for insecticide-resistant navel orangeworm (Lepidoptera: Pyralidae). Journal of economic entomology, 116(6), 2095-2103. Article toad194. https://doi.org/10.1093/jee/toad194

Rogers-Lavanne, M. P., Bader, A. C., de Flamingh, A., Saboowala, S., Smythe, C., Atchison, B., Moulton, N., Wilson, A., Wildman, D. E., Boraas, A., Uddin, M., Worl, R., & Malhi, R. S. (2023). Association between gene methylation and experiences of historical trauma in Alaska Native peoples. International Journal for Equity in Health, 22(1), Article 182. https://doi.org/10.1186/s12939-023-01967-7

Gernat, T., Jagla, T., Jones, B. M., Middendorf, M., & Robinson, G. E. (2023). Automated monitoring of honey bees with barcodes and artificial intelligence reveals two distinct social networks from a single affiliative behavior. Scientific reports, 13(1), Article 1541. https://doi.org/10.1038/s41598-022-26825-4

Safar, A. M., Santacruz-Márquez, R., Laws, M. J., Meling, D. D., Liu, Z., Kumar, T. R., Nowak, R. A., Raetzman, L. T., & Flaws, J. A. (2023). Dietary exposure to an environmentally relevant phthalate mixture alters follicle dynamics, hormone levels, ovarian gene expression, and pituitary gene expression in female mice. Reproductive Toxicology, 122, Article 108489. https://doi.org/10.1016/j.reprotox.2023.108489

Wu, W. Y., Liao, L. H., Lin, C. H., Johnson, R. M., & Berenbaum, M. R. (2023). Effects of pesticide-adjuvant combinations used in almond orchards on olfactory responses to social signals in honey bees (Apis mellifera). Scientific reports, 13(1), Article 15577. https://doi.org/10.1038/s41598-023-41818-7

Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (2023). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences, 15(3), 545-561. https://doi.org/10.1007/s12561-021-09310-w

Dominguez, J. S., Hauber, M. E., Tarwater, C. E., Williams, E., MacDonald, S., Strejc, B., & Pollock, H. S. (2023). Following the feeder: A global synthesis of disturbance-based foraging associations of birds. Journal of Animal Ecology, 92(12), 2263-2279. https://doi.org/10.1111/1365-2656.14024

Park, J., Sorrells, J. E., Chaney, E. J., Abdelrahman, A. M., Yonkus, J. A., Leiting, J. L., Nelson, H., Harrington, J. J., Aksamitiene, E., Marjanovic, M., Groves, P. D., Bushell, C., Truty, M. J., & Boppart, S. A. (2023). In vivo label-free optical signatures of chemotherapy response in human pancreatic ductal adenocarcinoma patient-derived xenografts. Communications biology, 6(1), Article 980. https://doi.org/10.1038/s42003-023-05368-y

Rivera, M., Edwards, J. A., Hauber, M. E., & Woolley, S. M. N. (2023). Machine learning and statistical classification of birdsong link vocal acoustic features with phylogeny. Scientific reports, 13(1), Article 7076. https://doi.org/10.1038/s41598-023-33825-5

Minhas, B. F., Beck, E. A., Cheng, C. H. C., & Catchen, J. (2023). Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific reports, 13(1), Article 6939. https://doi.org/10.1038/s41598-023-34237-1

Wroblewski, T. H., Witt, K. E., Lee, S., Malhi, R. S., Peede, D., Huerta-Sánchez, E., Villanea, F. A., & Claw, K. G. (2023). Pharmacogenetic variation in Neanderthals and Denisovans and implications for human health and response to medications. Genome biology and evolution, 15(12), Article evad222. https://doi.org/10.1093/gbe/evad222

Rivera, M., Edwards, J. A., Hauber, M. E., & Woolley, S. M. N. (2023). Publisher Correction: Machine learning and statistical classification of birdsong link vocal acoustic features with phylogeny (Scientific Reports, (2023), 13, 1, (7076), 10.1038/s41598-023-33825-5). Scientific reports, 13(1), Article 8830. https://doi.org/10.1038/s41598-023-35972-1

Benjamin, N. R., Crooijmans, R. P. M. A., Jordan, L. R., Bolt, C. R., Schook, L. B., Schachtschneider, K. M., Groenen, M. A. M., & Roca, A. L. (2023). Swine global genomic resources: insights into wild and domesticated populations. Mammalian Genome, 34(4), 520-530. https://doi.org/10.1007/s00335-023-10012-5

Au, W. C., Dures, S. G., Ishida, Y., Green, C. E., Zhao, K., Ogden, R., & Roca, A. L. (2023). Lion Localizer: a software tool for inferring the provenance of lions (Panthera leo) using mitochondrial DNA. Journal of Heredity, Article esad072. Advance online publication. https://doi.org/10.1093/jhered/esad072

Liu, X., Milenkovic, O., & Moustakides, G. V. (2023). Query-based selection of optimal candidates under the Mallows model. Theoretical Computer Science, 979, Article 114206. https://doi.org/10.1016/j.tcs.2023.114206

Piersma, S. J., Bangru, S., Yoon, J., Liu, T. W., Yang, L., Hsieh, C. S., Plougastel-Douglas, B., Kalsotra, A., & Yokoyama, W. M. (2023). NK cell expansion requires HuR and mediates control of solid tumors and long-term virus infection. The Journal of experimental medicine, 220(11). https://doi.org/10.1084/jem.20231154

Ho, K. K. Y., Kaiser, U. B., Chanson, P., Gadelha, M., Wass, J., Nieman, L., Little, A., Aghi, M. K., Raetzman, L., Post, K., Raverot, G., Borowsky, A. D., Erickson, D., Castaño, J. P., Laws, E. R., Zatelli, M. C., Sisco, J., Esserman, L., Yuen, K. C. J., ... Melmed, S. (2023). Pituitary adenoma or neuroendocrine tumour: the need for an integrated prognostic classification. Nature Reviews Endocrinology, 19(11), 671-678. https://doi.org/10.1038/s41574-023-00883-8

Fisher, A., Tadei, R., Berenbaum, M., Nieh, J., Siviter, H., Crall, J., Glass, J. R., Muth, F., Liao, L-H., Traynor, K., Desjardins, N., Nocelli, R., Simon-Delso, N., & Harrison, J. F. (2023). Breaking the cycle: Reforming pesticide regulation to protect pollinators. BioScience, Article biad088. Advance online publication. https://doi.org/10.1093/biosci/biad088

Santacruz-Márquez, R., Safar, A. M., Laws, M. J., Meling, D. D., Liu, Z., Kumar, T. R., Nowak, R. A., Raetzman, L. T., & Flaws, J. A. (2023). The effects of short-term and long-term phthalate exposures on ovarian follicle growth dynamics and hormone levels in female mice. Biology of reproduction, Article ioad137. Advance online publication. https://doi.org/10.1093/biolre/ioad137

Dominguez, J. S., Rakovic, M., Li, D., Pollock, H. S., Lawson, S., Novcic, I., Su, X., Zeng, Q., Al-Dhufari, R., Johnson-Cadle, S., Boldrick, J., Chamberlain, M., & Hauber, M. E. (2023). What's the rumpus? Resident temperate forest birds approach an unfamiliar neotropical alarm call across three continents. Biology Letters, 19(10), Article 20230332. https://doi.org/10.1098/rsbl.2023.0332

Mendenhall, R., Lee, M. J., Cole, S. W., Morrow, R., Rodriguez-Zas, S. L., Henderson, L., Turi, K. N., & Greenlee, A. (2023). Black Mothers in Racially Segregated Neighborhoods Embodying Structural Violence: PTSD and Depressive Symptoms on the South Side of Chicago. Journal of Racial and Ethnic Health Disparities, 10(5), 2513-2527. https://doi.org/10.1007/s40615-022-01432-1

Fernandez-Duque, F., Huerta, E. Y., Lawson, S. L., Chikoti, S., & Hauber, M. E. (2023). Nest Integration: a novel form of food acquisition by altricial fledglings. Evolutionary Ecology, 37(5), 859-869. https://doi.org/10.1007/s10682-023-10250-8

Rodriguez-Zas, S. L., Southey, N. L., Rund, L., Antonson, A. M., Nowak, R. A., & Johnson, R. W. (2023). Prenatal and postnatal challenges affect the hypothalamic molecular pathways that regulate hormonal levels. PloS one, 18(10), Article e0292952. https://doi.org/10.1371/journal.pone.0292952

Wilcox, R. R., & Barbey, A. K. (2023). Connectome-based predictive modeling of fluid intelligence: evidence for a global system of functionally integrated brain networks. Cerebral Cortex, 33(19), 10322-10331. Article bhad284. https://doi.org/10.1093/cercor/bhad284

Enos, J. K., Ducay, R., Paitz, R. T., Ward, M. P., & Hauber, M. E. (2023). Female red-winged blackbirds (Agelaius phoeniceus) do not alter nest site selection, maternal programming, or hormone-mediated maternal effects in response to perceived nest predation or brood parasitism risk. General and Comparative Endocrinology, 341, Article 114322. https://doi.org/10.1016/j.ygcen.2023.114322

Liu, X., Wickland, D. P., Lin, Z., Liu, Q., dos Santos, L. B., Hudson, K. A., & Hudson, M. E. (2023). Promoter deletion in the soybean Compact mutant leads to overexpression of a gene with homology to the C20-gibberellin 2-oxidase family. Journal of experimental botany, 74(17), 5153-5165. Article erad267. https://doi.org/10.1093/jxb/erad267

Miller, R. C., Lee, J., Kim, Y. J., Han, H. S., & Kong, H. (2023). In-Drop Thermal Cycling of Microcrystal Assembly for Senescence Control with Minimal Variation in Efficacy. Advanced Functional Materials, 33(37), Article 2302232. https://doi.org/10.1002/adfm.202302232

Sarker, K., Zhu, R., Holscher, H. D., & Zhai, C. X. (2023). Augmenting nutritional metabolomics with a genome-scale metabolic model for assessment of diet intake. In ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics Article 4 (ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics). Association for Computing Machinery. https://doi.org/10.1145/3584371.3612958

Luscher, B., Maguire, J. L., Rudolph, U., & Sibille, E. (2023). GABAA receptors as targets for treating affective and cognitive symptoms of depression. Trends in Pharmacological Sciences, 44(9), 586-600. https://doi.org/10.1016/j.tips.2023.06.009

Seabury, C. M., Smith, J. L., Wilson, M. L., Bhattarai, E., Santos, J. E. P., Chebel, R. C., Galvão, K. N., Schuenemann, G. M., Bicalho, R. C., Gilbert, R. O., Rodriguez-Zas, S. L., Rosa, G., Thatcher, W. W., & Pinedo, P. J. (2023). Genome-wide association and genomic prediction for a reproductive index summarizing fertility outcomes in U.S. Holsteins. G3: Genes, Genomes, Genetics, 13(9), Article jkad043. https://doi.org/10.1093/g3journal/jkad043

Shih, C. H., Naughton, N., Halder, U., Chang, H. S., Kim, S. H., Gillette, R., Mehta, P. G., & Gazzola, M. (2023). Hierarchical Control and Learning of a Foraging CyberOctopus. Advanced Intelligent Systems, 5(9), Article 2300088. https://doi.org/10.1002/aisy.202300088

Rocha, A. M., Zanon, C., & Roberts, B. W. (2023). Measuring conscientiousness in Brazil and disentangling its relationships with subjective well-being, and academic involvement. Current Psychology, 42(27), 23970-23985. https://doi.org/10.1007/s12144-022-03552-7

De La Torre, K. M., Lee, Y., Safar, A., Laws, M. J., Meling, D. D., Thompson, L. M., Streifer, M., Weis, K. E., Raetzman, L. T., Gore, A. C., & Flaws, J. A. (2023). Prenatal and postnatal exposure to polychlorinated biphenyls alter follicle numbers, gene expression, and a proliferation marker in the rat ovary. Reproductive Toxicology, 120, Article 108427. https://doi.org/10.1016/j.reprotox.2023.108427

Hanisch, P. E., Hanisch, E. R., Blanco, V., Tubaro, P. L., & Suarez, A. V. (2023). Spatial fidelity and uniform exploration in the foraging behaviour of a giant predatory ant. Animal Behaviour, 203, 63-73. https://doi.org/10.1016/j.anbehav.2023.06.009

Lee, K. Y., Wang, H., Yook, Y., Rhodes, J. S., Christian-Hinman, C. A., & Tsai, N. P. (2023). Tumor suppressor p53 modulates activity-dependent synapse strengthening, autism-like behavior and hippocampus-dependent learning. Molecular Psychiatry, 28(9), 3782-3794. https://doi.org/10.1038/s41380-023-02268-9

Leonard, M., Hauber, M., James, H. F., Williams, T. D., & Wiebe, K. (2023). 2023 AOS Elliott Coues Award to Gregory F. Ball and Jacques Balthazart. Ornithology, Article ukad040. Advance online publication. https://doi.org/10.1093/ornithology/ukad040

Leonard, M., Hauber, M., James, H. F., Williams, T. D., & Wiebe, K. (2023). 2023 AOS William Brewster Memorial Award to Cristina Yumi Miyaki and Maren Vitousek. Ornithology, Article ukad039. Advance online publication. https://doi.org/10.1093/ornithology/ukad039

Gonigam, R. L., Weis, K. E., Ge, X., Yao, B., Zhang, Q., & Raetzman, L. T. (2023). Characterization of Somatotrope Cell Expansion in Response to GHRH in the Neonatal Mouse Pituitary. Endocrinology, 164(10). https://doi.org/10.1210/endocr/bqad131

O'Fallon, S., Drager, K., Zhao, A., Suarez, A., & Pinter-Wollman, N. (2023). Foraging behaviour affects nest architecture in a cross-species comparison of ant nests. Philosophical Transactions of the Royal Society B: Biological Sciences, 378(1884), Article 20220146. https://doi.org/10.1098/rstb.2022.0146

Mainwaring, M. C., Stoddard, M. C., Barber, I., Deeming, D. C., & Hauber, M. E. (2023). The evolutionary ecology of nests: a cross-taxon approach. Philosophical Transactions of the Royal Society B: Biological Sciences, 378(1884), Article 20220136. https://doi.org/10.1098/rstb.2022.0136

Mainwaring, M. C., Medina, I., Tobalske, B. W., Hartley, I. R., Varricchio, D. J., & Hauber, M. E. (2023). The evolution of nest site use and nest architecture in modern birds and their ancestors. Philosophical Transactions of the Royal Society B: Biological Sciences, 378(1884), Article 20220143. https://doi.org/10.1098/rstb.2022.0143

Roca, A. L. (2023). Evolution: Untangling the woolly mammoth. Current Biology, 33(16), R870-R872. https://doi.org/10.1016/j.cub.2023.07.026

Li, N., Bullock, D., Butts-Wilmsmeyer, C., Gentry, L., Goodwin, G., Han, J., Kleczweski, N., Martín, N. F., Paulausky, P., Pistorius, P., Seiter, N., Schroeder, N., & Margenot, A. J. (2023). Distinct soil health indicators are associated with variation in maize yield and tile drain nitrate losses. Soil Science Society of America Journal, 87(6), 1332-1347. Advance online publication. https://doi.org/10.1002/saj2.20586

Ros, K., Jin, M., Levine, J., & Zhai, C. X. (2023). Retrieving Webpages Using Online Discussions. In ICTIR 2023 - Proceedings of the 2023 ACM SIGIR International Conference on the Theory of Information Retrieval (pp. 159-168). (ICTIR 2023 - Proceedings of the 2023 ACM SIGIR International Conference on the Theory of Information Retrieval). Association for Computing Machinery. https://doi.org/10.1145/3578337.3605139

Jin, B., Zhang, Y., Zhu, Q., & Han, J. (2023). Heterformer: Transformer-based Deep Node Representation Learning on Heterogeneous Text-Rich Networks. In KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 1020-1031). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599376

Meng, Y., Huang, J., Zhang, Y., Zhang, Y., & Han, J. (2023). Pretrained Language Representations for Text Understanding: A Weakly-Supervised Perspective. In KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 5817-5818). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599569

Zhang, X., Malkov, Y., Florez, O., Park, S., McWilliams, B., Han, J., & El-Kishky, A. (2023). TwHIN-BERT: A Socially-Enriched Pre-trained Language Model for Multilingual Tweet Representations at Twitter. In KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 5597-5607). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599921

Zhang, Y., Jin, B., Chen, X., Shen, Y., Zhang, Y., Meng, Y., & Han, J. (2023). Weakly Supervised Multi-Label Classification of Full-Text Scientific Papers. In KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 3458-3469). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599544

Pattabiraman, S., Gabrys, R., & Milenkovic, O. (2023). Coding for Polymer-Based Data Storage. IEEE Transactions on Information Theory, 69(8), 4812-4836. https://doi.org/10.1109/TIT.2023.3267620

Lawson, S. L., Enos, J. K., Fernandez-Duque, F., Kleindorfer, S., Ward, M. P., Gill, S. A., & Hauber, M. E. (2023). Absence of Referential Alarm Calls in Long-term Allopatry from the Referent: A Case Study with Galapagos Yellow Warblers. Behavioral Ecology and Sociobiology, 77(8), Article 99. https://doi.org/10.1007/s00265-023-03372-0

Bader, A. C., Carbaugh, A. E., Davis, J. L., Krupa, K., & Malhi, R. S. (2023). Biological samples taken from Native American Ancestors are human remains under NAGPRA. American Journal of Biological Anthropology, 181(4), 527-534. https://doi.org/10.1002/ajpa.24726

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2023). Corrigendum to “Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter” [J. Archaeol. Sci. 105 (2019) 11–18, (S0305440318305661), (10.1016/j.jas.2019.02.006)]. Journal of Archaeological Science, 156, Article 105801. https://doi.org/10.1016/j.jas.2023.105801

Terrill Sondag, E. E., Stewart Merrill, T. E., Drnevich, J., Holmes, J. R., Fischer, E. K., Cáceres, C. E., & Strickland, L. R. (2023). Differential gene expression in response to fungal pathogen exposure in the aquatic invertebrate, Daphnia dentifera. Ecology and Evolution, 13(8), Article e10354. https://doi.org/10.1002/ece3.10354

Southey, B. R., Johnson, R. W., & Rodriguez-Zas, S. L. (2023). Influence of Maternal Immune Activation and Stressors on the Hippocampal Metabolome. Metabolites, 13(8), Article 881. https://doi.org/10.3390/metabo13080881

Rochette, N. C., Rivera-Colón, A. G., Walsh, J., Sanger, T. J., Campbell-Staton, S. C., & Catchen, J. M. (2023). On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity. Molecular ecology resources, 23(6), 1299-1318. https://doi.org/10.1111/1755-0998.13800

You, J. S., Kim, Y., Lee, S., Bashir, R., & Chen, J. (2023). RhoA/ROCK signalling activated by ARHGEF3 promotes muscle weakness via autophagy in dystrophic mdx mice. Journal of Cachexia, Sarcopenia and Muscle, 14(4), 1880-1893. https://doi.org/10.1002/jcsm.13278

You, J. S., Barai, P., & Chen, J. (2023). Sex differences in skeletal muscle size, function, and myosin heavy chain isoform expression during post-injury regeneration in mice. Physiological Reports, 11(16), Article e15791. https://doi.org/10.14814/phy2.15791

Traniello, I. M., Bukhari, S. A., Dibaeinia, P., Serrano, G., Avalos, A., Ahmed, A. C., Sankey, A. L., Hernaez, M., Sinha, S., Zhao, S. D., Catchen, J., & Robinson, G. E. (2023). Single-cell dissection of aggression in honeybee colonies. Nature Ecology and Evolution, 7(8), 1232-1244. https://doi.org/10.1038/s41559-023-02090-0

Enos, J. K., Smith, E. B., Ward, M. P., Swaddle, J. P., & Hauber, M. E. (2023). Increasing perceived predation risk through playbacks reduces Red-winged Blackbird abundance in agriculture late in the breeding season. Ornithological Applications, Article duad034. Advance online publication. https://doi.org/10.1093/ornithapp/duad034

Berenbaum, M. R. (2023). “Debugging” insect-related conspiracy theories. Annals of the Entomological Society of America, Article saad018. Advance online publication. https://doi.org/10.1093/aesa/saad018

Carrica, L. K., Choi, C. Y., Walter, F. A., Noonan, B. L., Shi, L., Johnson, C. T., Bradshaw, H. B., Liang, N. C., & Gulley, J. M. (2023). Effects of combined use of alcohol and delta-9-tetrahydrocannibinol on working memory in Long Evans rats. Behavioural Brain Research, 449, Article 114475. https://doi.org/10.1016/j.bbr.2023.114475

Brown, N. M., & Mendenhall, R. (2023). Communal Conversations: Black Women World-Making Through Mentorship. Qualitative Inquiry, 29(6), 698-704. https://doi.org/10.1177/10778004221124015

Di Giovanni, A. J., Villa, J., Stanback, M. T., Thompson, C. F., Sakaluk, S. K., Hauber, M. E., & Hanley, D. (2023). Decision rules for egg-color-based rejection by two cavity-nesting hosts of the brown-headed cowbird. Journal of Experimental Biology, 226(14), Article jeb245188. https://doi.org/10.1242/jeb.245188

Lai, T. M., Zhai, C. X., & Ji, H. (2023). KEBLM: Knowledge-Enhanced Biomedical Language Models. Journal of Biomedical Informatics, 143, Article 104392. https://doi.org/10.1016/j.jbi.2023.104392

Liu, J., Huang, Z., Zhai, C., & Liu, Q. (2023). Learning by Applying: A General Framework for Mathematical Reasoning via Enhancing Explicit Knowledge Learning. In B. Williams, Y. Chen, & J. Neville (Eds.), AAAI-23 Technical Tracks 4 (pp. 4497-4506). (Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023; Vol. 37). American Association for Artificial Intelligence (AAAI) Press.

Xin, H., & Zhao, S. D. (2023). A compound decision approach to covariance matrix estimation. Biometrics, 79(2), 1201-1212. https://doi.org/10.1111/biom.13686

He, G., Zhao, X., Xu, Y., Wang, Y., Zhang, Z., Xiao, L., Hudson, M., Hu, R., & Li, S. (2023). An efficient virus-induced gene silencing (VIGS) system for gene functional studies in Miscanthus. GCB Bioenergy, 15(6), 805-820. https://doi.org/10.1111/gcbb.13051

Cheng, C-H. C., Rivera-Colón, A. G., Minhas, B. F., Wilson, L., Rayamajhi, N., Vargas-Chacoff, L., & Catchen, J. M. (2023). Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus—The Closest Ancestral Proxy of Antarctic Cryonotothenioids. Genes, 14(6), Article 1196. https://doi.org/10.3390/genes14061196

Dudek, S. M., Phoenix, A. N., Scappini, E., Shepeleva, D. V., Herbeck, Y. E., Trut, L. N., Farris, S., & Kukekova, A. V. (2023). Defining hippocampal area CA2 in the fox (Vulpes vulpes) brain. Hippocampus, 33(6), 700-711. https://doi.org/10.1002/hipo.23546

Valera, E., Kindratenko, V., Jankelow, A. M., Heredia, J., Kim, A. Y., Cowell, T. W., Chen, C. L., White, K., Han, H. S., & Bashir, R. (2023). Electrochemical point-of-care devices for the diagnosis of sepsis. Current Opinion in Electrochemistry, 39, Article 101300. https://doi.org/10.1016/j.coelec.2023.101300

Cutia, C. A., Leverton, L. K., Weis, K. E., Raetzman, L. T., & Christian-Hinman, C. A. (2023). Female-specific pituitary gonadotrope dysregulation in mice with chronic focal epilepsy. Experimental Neurology, 364, Article 114389. https://doi.org/10.1016/j.expneurol.2023.114389

Heiman, S. L., Hirt, E. R., Isch, C., Brinkworth, J. F., Cronk, L., Alcock, J., Aktipis, A., & Todd, P. M. (2023). Identities as predictors of vaccine hesitancy during the COVID-19 pandemic. Journal of Social Issues, 79(2), 556-577. https://doi.org/10.1111/josi.12569

Sun, J., Chen, J., Amar, K., Wu, Y., Jiang, M., & Wang, N. (2023). LAP2β transmits force to upregulate genes via chromatin domain stretching but not compression. Acta Biomaterialia, 163, 326-338. https://doi.org/10.1016/j.actbio.2021.10.029

Weis, K. E., Thompson, L. M., Streifer, M., Guardado, I., Flaws, J. A., Gore, A. C., & Raetzman, L. T. (2023). Pre- and postnatal developmental exposure to the polychlorinated biphenyl mixture aroclor 1221 alters female rat pituitary gonadotropins and estrogen receptor alpha levels. Reproductive Toxicology, 118, Article 108388. https://doi.org/10.1016/j.reprotox.2023.108388

Rogers Flattery, C. N., Abdulla, M., Barton, S. A., Michlich, J. M., Trut, L. N., Kukekova, A. V., & Hecht, E. E. (2023). The brain of the silver fox (Vulpes vulpes): a neuroanatomical reference of cell-stained histological and MRI images. Brain Structure and Function, 228(5), 1177-1189. https://doi.org/10.1007/s00429-023-02648-5

Derham, J. M., & Kalsotra, A. (2023). The discovery, function, and regulation of epithelial splicing regulatory proteins (ESRP) 1 and 2. Biochemical Society transactions, 51(3), 1097-1109. https://doi.org/10.1042/BST20221124

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Perrin-Stowe, T. I. N., Ishida, Y., Terrill, E. E., Beetem, D., Ryder, O. A., Novakofski, J. E., Mateus-Pinilla, N. E., & Roca, A. L. (2022). Variation in the PRNP gene of Pere David’s deer (Elaphurus davidianus) may impact genetic vulnerability to chronic wasting disease. Conservation Genetics, 23(2), 313-323. https://doi.org/10.1007/s10592-021-01419-1

Severson, A. L., Byrd, B. F., Mallott, E. K., Owings, A. C., DeGiorgio, M., de Flamingh, A., Nijmeh, C., Arellano, M. V., Leventhal, A., Rosenberg, N. A., & Malhi, R. S. (2022). Ancient and modern genomics of the Ohlone Indigenous population of California. Proceedings of the National Academy of Sciences, 119(13), e2111533119. [e2111533119]. https://doi.org/10.1073/pnas.2111533119

Behnke, G. D., Kim, N., Riggins, C. W., Zabaloy, M. C., Rodriguez-Zas, S. L., & Villamil, M. B. (2022). A Longitudinal Study of the Microbial Basis of Nitrous Oxide Emissions Within a Long-Term Agricultural Experiment. Frontiers in Agronomy, 4, [833338]. https://doi.org/10.3389/fagro.2022.833338

Tabatabaei, S. K., Pham, B., Pan, C., Liu, J., Chandak, S., Shorkey, S. A., Hernandez, A. G., Aksimentiev, A., Chen, M., Schroeder, C. M., & Milenkovic, O. (2022). Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Neural Network Nanopore Readout Processing. Nano letters, 22(5), 1905-1914. https://doi.org/10.1021/acs.nanolett.1c04203

Lam, F., Chu, J., Choi, J. S., Cao, C., Hitchens, T. K., Silverman, S. K., Liang, Z-P., Dilger, R. N., Robinson, G. E., & Li, K. C. (2022). Epigenetic MRI: Noninvasive imaging of DNA methylation in the brain. Proceedings of the National Academy of Sciences, 119(10), [e2119891119]. https://doi.org/10.1073/pnas.2119891119

Jing, W., & Han, H. S. (2022). Inertial Self-Assembly Dynamics of Interacting Droplet Ensembles in Microfluidic Flows. Analytical Chemistry, 94(9), 3978-3986. https://doi.org/10.1021/acs.analchem.1c05116

Bonthuis, P. J., Steinwand, S., Stacher Hörndli, C. N., Emery, J., Huang, W. C., Kravitz, S., Ferris, E., & Gregg, C. (2022). Noncanonical genomic imprinting in the monoamine system determines naturalistic foraging and brain-adrenal axis functions. Cell Reports, 38(10), [110500]. https://doi.org/10.1016/j.celrep.2022.110500

Gaffield, K. N., Boler, D. D., Dilger, R. N., Dilger, A. C., & Harsh, B. N. (2022). Effects of feeding high oleic soybean oil to growing-finishing pigs on growth performance and carcass characteristics. Journal of animal science, 100(3), [skac071]. https://doi.org/10.1093/jas/skac071

Aydin, O., Passaro, A. P., Raman, R., Spellicy, S. E., Weinberg, R. P., Kamm, R. D., Sample, M., Truskey, G. A., Zartman, J., Dar, R. D., Palacios, S., Wang, J., Tordoff, J., Montserrat, N., Bashir, R., Saif, M. T. A., & Weiss, R. (2022). Principles for the design of multicellular engineered living systems. APL Bioengineering, 6(1), [010903]. https://doi.org/10.1063/5.0076635

Fuller, R. C. (2022). Revisiting old truths: The evolution of male coloration in guppies as a function of predation. Molecular ecology, 31(5), 1333-1336. https://doi.org/10.1111/mec.16376

Nawaz, A., Shilikbay, T., Skariah, G., & Ceman, S. (2022). Unwinding the roles of RNA helicase MOV10. Wiley Interdisciplinary Reviews: RNA, 13(2), [e1682]. https://doi.org/10.1002/wrna.1682

Traniello, I. M., Hamilton, A. R., Gernat, T., Cash-Ahmed, A. C., Harwood, G. P., Ray, A. M., Glavin, A., Torres, J., Goldenfeld, N., & Robinson, G. E. (2022). Context-dependent influence of threat on honey bee social network dynamics and brain gene expression. Journal of Experimental Biology, 225(6), [jeb243738]. https://doi.org/10.1242/jeb.243738

Rozanski, A. N., Cini, A., Lopreto, T. E., Gandia, K. M., Hauber, M. E., Cervo, R., & Uy, F. M. K. (2022). Differential investment in visual and olfactory brain regions is linked to the sensory needs of a wasp social parasite and its host. Journal of Comparative Neurology, 530(4), 756-767. https://doi.org/10.1002/cne.25242

Wang, Z., Li, Y., & Lam, F. (2022). High-resolution, 3D multi-TE 1H MRSI using fast spatiospectral encoding and subspace imaging. Magnetic Resonance in Medicine, 87(3), 1103-1118. https://doi.org/10.1002/mrm.29015

Shi, Y., Cui, M., Ochs, K., Brendel, M., Strübing, F. L., Briel, N., Eckenweber, F., Zou, C., Banati, R. B., Liu, G. J., Middleton, R. J., Rupprecht, R., Rudolph, U., Zeilhofer, H. U., Rammes, G., Herms, J., & Dorostkar, M. M. (2022). Long-term diazepam treatment enhances microglial spine engulfment and impairs cognitive performance via the mitochondrial 18 kDa translocator protein (TSPO). Nature Neuroscience, 25(3), 317-329. https://doi.org/10.1038/s41593-022-01013-9

Ge, X., Weis, K., Flaws, J., & Raetzman, L. (2022). Prenatal exposure to the phthalate DEHP impacts reproduction-related gene expression in the pituitary. Reproductive Toxicology, 108, 18-27. https://doi.org/10.1016/j.reprotox.2021.12.008

Zhang, Y., Garg, S., Meng, Y., Chen, X., & Han, J. (2022). MotifClass: Weakly supervised text classification with higher-order metadata information. In WSDM 2022 - Proceedings of the 15th ACM International Conference on Web Search and Data Mining (pp. 1357-1367). (WSDM 2022 - Proceedings of the 15th ACM International Conference on Web Search and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3488560.3498384

Auerbach, B. D., & Gritton, H. J. (2022). Hearing in Complex Environments: Auditory Gain Control, Attention, and Hearing Loss. Frontiers in Neuroscience, 16, [799787]. https://doi.org/10.3389/fnins.2022.799787

Zimmerman, S. C., Bai, Y., & Kalsotra, A. (2022). Multivalent ligand for myotonic dystrophy. (U.S. Patent No. 11242326).

Reilly, L. M., Hu, Y., Von Schaumburg, P. C., De Oliveira, M. R. D., He, F., Rodriguez-Zas, S. L., Southey, B. R., Parsons, C. M., Utterback, P., Lambrakis, L., Da Costa, D. V., Bertechini, A. G., Saad, F. M. O. B., & De Godoy, M. R. C. (2022). Chemical composition of selected insect meals and their effect on apparent total tract digestibility, fecal metabolites, and microbiota of adult cats fed insect-based retorted diets. Journal of animal science, 100(2), [skac024]. https://doi.org/10.1093/jas/skac024

Han, J., Locke, S. P., Herman, T. K., Schroeder, N. E., & Hartman, G. L. (2022). Evaluation of perennial Glycine species for response to Meloidogyne incognita, Rotylenchulus reniformis, and Pratylenchus penetrans. Journal of Nematology, 54(1). https://doi.org/10.21307/jofnem-2022-001

Silva, R. R., Martello, F., Feitosa, R. M., Silva, O. G. M., do Prado, L. P., Brandão, C. R. F., de Albuquerque, E. Z., Morini, M. S. C., Delabie, J. H. C., dos Santos Monteiro, E. C., Emanuel Oliveira Alves, A., Wild, A. L., Christianini, A. V., Arnhold, A., Casadei Ferreira, A., Oliveira, A. M., Santos, A. D., Galbán, A., de Oliveira, A. A., ... Ribeiro, M. C. (2022). ATLANTIC ANTS: a data set of ants in Atlantic Forests of South America. Ecology, 103(2), [e03580]. https://doi.org/10.1002/ecy.3580

Enos, J. K., Hauber, M. E., & Aidala, Z. (2022). Delayed timing of breeding attempts, but not time lost to nest construction, reduces the annual reproductive output of the Eastern Phoebe (Sayornis phoebe). Avian Biology Research, 15(1), 34-40. https://doi.org/10.1177/17581559211066094

Capel, S. L. R., Bouzat, J. L., Catchen, J. M., Johnson, J. A., Dunn, P. O., & Paige, K. N. (2022). Evaluating the genome-wide impacts of species translocations: the greater prairie-chicken as a case study. Conservation Genetics, 23(1), 179-191. https://doi.org/10.1007/s10592-021-01412-8

Sewell, M. N., Soto, C. J., Napolitano, C. M., Yoon, H. J., & Roberts, B. W. (2022). Survey data of social, emotional, and behavioral skills among seven independent samples. Data in Brief, 40, [107792]. https://doi.org/10.1016/j.dib.2022.107792

Dong, J., & Hudson, M. E. (2022). WI12Rhg1 interacts with DELLAs and mediates soybean cyst nematode resistance through hormone pathways. Plant Biotechnology Journal, 20(2), 283-296. https://doi.org/10.1111/pbi.13709

Gandia, K. M., Cappa, F., Baracchi, D., Hauber, M. E., Beani, L., & Uy, F. M. K. (2022). Caste, Sex, and Parasitism Influence Brain Plasticity in a Social Wasp. Frontiers in Ecology and Evolution, 10, [803437]. https://doi.org/10.3389/fevo.2022.803437

Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., ... Zhang, G. (2022). The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115635118]. https://doi.org/10.1073/pnas.2115635118

Blaxter, M., Archibald, J. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Di Palma, F., Durbin, R., Edwards, S. V., Graves, J. A. M., Hackett, K. J., Hall, N., Jarvis, E. D., Johnson, R. N., Karlsson, E. K., Kress, W. J., Kuraku, S., Lawniczak, M. K. N., Lindblad-Toh, K., Lopez, J. V., ... Lewin, H. A. (2022). Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115636118]. https://doi.org/10.1073/pnas.2115636118

Stenstrom, K., Voss, H. U., Tokarev, K., Phan, M. L., & Hauber, M. E. (2022). The Direction of response selectivity between conspecific and heterospecific auditory stimuli varies with response metric. Behavioural Brain Research, 416, [113534]. https://doi.org/10.1016/j.bbr.2021.113534

Liu, X., Kumar, V., Tsai, N. P., & Auerbach, B. D. (2022). Hyperexcitability and Homeostasis in Fragile X Syndrome. Frontiers in Molecular Neuroscience, 14, [805929]. https://doi.org/10.3389/fnmol.2021.805929

Daniels, V. C., Monaco, M. H., Wang, M., Hirvonen, J., Jensen, H. M., Ouwehand, A. C., Mukherjea, R., Dilger, R. N., & Donovan, S. M. (2022). Evaluation of 2’-fucosyllactose and bifidobacterium longum subspecies infantis on growth, organ weights, and intestinal development of piglets. Nutrients, 14(1), [199]. https://doi.org/10.3390/nu14010199

Kukekova, A. V., Trut, L. N., & Acland, G. M. (2022). Genetics of domesticated behavior in dogs and foxes. In Genetics and the Behavior of Domestic Animals, Third Edition (pp. 275-323). Elsevier. https://doi.org/10.1016/B978-0-323-85752-9.00007-X

Norsworthy, M. D., & Gillette, M. U. (2022). Microfluidic Devices for Analysis of Neuronal Development. In Engineering Biomaterials for Neural Applications (pp. 169-185). Springer. https://doi.org/10.1007/978-3-031-11409-0_4

Winnicki, S. K., Hauber, M. E., Benson, T. J., & Abolins-Abols, M. (2022). Ground nesting by arboreal American robins (Turdus migratorius). Ecology and Evolution, 12(1), [e8489]. https://doi.org/10.1002/ece3.8489

Taylor, A. J., Cardenas-Torres, E., Miller, M. J., Zhao, S. D., & Engeseth, N. J. (2022). Microbes associated with spontaneous cacao fermentations - A systematic review and meta-analysis. Current Research in Food Science, 5, 1452-1464. https://doi.org/10.1016/j.crfs.2022.08.008

Westrick, S. E., Laslo, M., & Fischer, E. K. (2022). The Natural History of Model Organisms: The big potential of the small frog Eleutherodactylus coqui. eLife, 11, [e73401]. https://doi.org/10.7554/eLife.73401

Zhao, S. D., & Biscarri, W. (2022). A Regression Modeling Approach to Structured Shrinkage Estimation. Journal of the American Statistical Association, 117(540), 1684-1694. https://doi.org/10.1080/01621459.2021.1875838

Wang, T., Halder, U., Gribkova, E., Gillette, R., Gazzola, M., & Mehta, P. G. (2022). A Sensory Feedback Control Law for Octopus Arm Movements. In 2022 IEEE 61st Conference on Decision and Control, CDC 2022 (pp. 1059-1066). (Proceedings of the IEEE Conference on Decision and Control; Vol. 2022-December). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CDC51059.2022.9993021

Thompson, C. F., Hodges, K. E., Mortimer, N. T., Vrailas-Mortimer, A. D., Sakaluk, S. K., & Hauber, M. E. (2022). Avian eggshell coloration predicts shell-matrix protoporphyrin content. Canadian journal of zoology, 100(2), 77-81. https://doi.org/10.1139/cjz-2021-0134

Pan, C., Gabrys, R., Liu, X., Colbourn, C., & Milenkovic, O. (2022). Balanced and Swap-Robust Trades for Dynamical Distributed Storage. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 2385-2390). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834794

Brown, N. M., & Mendenhall, R. (Accepted/In press). Communal Conversations: Black Women World-Making Through Mentorship. Qualitative Inquiry. https://doi.org/10.1177/10778004221124015

Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., Dilger, R. N., Erdman, J. W., Burd, N. A., Holscher, H. D., & Khan, N. A. (2022). Dietary lutein plus zeaxanthin and choline intake is interactively associated with cognitive flexibility in middle-adulthood in adults with overweight and obesity. Nutritional Neuroscience, 25(7), 1437-1452. https://doi.org/10.1080/1028415X.2020.1866867

Marchioretto, P. V., Long, S. A., Rodriguez-Zas, S. L., Womack, S. A., Lindsey, B. R., Matthews, G., Milner, D. J., Rubessa, M., & Wheeler, M. B. (2022). Effect of the day of dominant follicle removal on ovum pick-up success on ½ Holstein × ½ Gyr cows. Reproduction, fertility, and development, 34(1/2), 303. https://doi.org/10.1071/RDv34n2Ab130

Burns-Cusato, M., Rana, A., Hawkins, W., Young, Z., & Hauber, M. E. (2022). Egg Burial in the Ringneck Dove (Streptopelia risoria): A Potential Laboratory Model System for Egg-Rejection Research? Journal of Comparative Psychology, 136(3), 189-193. https://doi.org/10.1037/com0000318

Gillette, M. U., & Mitchell, J. W. (2022). Electrophysiology of the Suprachiasmatic Nucleus: Single-Unit Recording. In Methods in Molecular Biology (pp. 181-189). (Methods in Molecular Biology; Vol. 2482). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-2249-0_12

Yarlagadda, K., Zachwieja, A. J., de Flamingh, A., Phungviwatnikul, T., Rivera-Colón, A. G., Roseman, C., Shackelford, L., Swanson, K. S., & Malhi, R. S. (2022). Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes. Proceedings of the Royal Society B: Biological Sciences, 289(1974), [20220052]. https://doi.org/10.1098/rspb.2022.0052

Soto, C. J., Napolitano, C. M., Sewell, M. N., Yoon, H. J., & Roberts, B. W. (Accepted/In press). Going Beyond Traits: Social, Emotional, and Behavioral Skills Matter for Adolescents’ Success. Social Psychological and Personality Science. https://doi.org/10.1177/19485506221127483

Sun, Y., Han, J., Yan, X., Yu, P. S., & Wu, T. (2022). Heterogeneous Information Networks: the Past, the Present, and the Future. Proceedings of the VLDB Endowment, 15(12), 3807-3811. https://doi.org/10.14778/3554821.3554901

Rocha, A. M., Zanon, C., & Roberts, B. W. (Accepted/In press). Measuring conscientiousness in Brazil and disentangling its relationships with subjective well-being, and academic involvement. Current Psychology. https://doi.org/10.1007/s12144-022-03552-7

Novčić, I., Vidović, Z., & Hauber, M. E. (2022). Nonrandom pattern of vigilance by preening black-headed gulls. Behaviour, 159(12), 1101-1114. https://doi.org/10.1163/1568539X-bja10167

Roberts, B. W., & Yoon, H. J. (2022). Personality Psychology. Annual review of psychology, 73, 489-516. https://doi.org/10.1146/annurev-psych-020821-114927

Han, J., Ugarte, C. M., Flores, M. A. N., Hansen, M. G., Bowen, C. R., Schroeder, N. E., & Hartman, G. L. (2022). Plant-Parasitic and Free-Living Nematodes from Organically Farmed Fields in Illinois and Wisconsin. Plant Health Progress, 23(2), 227-234. https://doi.org/10.1094/PHP-06-21-0096-S

Rivera-Colón, A. G., & Catchen, J. (2022). Population Genomics Analysis with RAD, Reprised: Stacks 2. In Methods in Molecular Biology (pp. 99-149). (Methods in Molecular Biology; Vol. 2498). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-2313-8_7

Choi, S., Clark, P. G., Gutierrez, V., Runion, C., & Mendenhall, R. (2022). Racial Microaggressions and Latinxs' Well-being: A Systematic Review. Journal of Ethnic and Cultural Diversity in Social Work, 31(1), 16-27. https://doi.org/10.1080/15313204.2020.1827336

Du, X., Zhang, Z., Li, S., Wang, Z., Yu, P., Wang, H., Lai, T. M., Lin, X., Liu, I., Zhou, B., Wen, H., Li, M., Hannan, D., Lei, J., Kim, H., Dror, R., Wang, H., Regan, M., Zeng, Q., ... Ji, H. (2022). RESIN-11: Schema-guided Event Prediction for 11 Newsworthy Scenarios. In NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Demonstrations Session (pp. 54-63). (NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Demonstrations Session). Association for Computational Linguistics (ACL).

Xiao, Y., Zhang, Z., Mao, Y., Yang, C., & Han, J. (2022). SAIS: Supervising and Augmenting Intermediate Steps for Document-Level Relation Extraction. In NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference (pp. 2395-2409). (NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference). Association for Computational Linguistics (ACL).

Zhang, Y., Meng, Y., Wang, X., Wang, S., & Han, J. (2022). Seed-Guided Topic Discovery with Out-of-Vocabulary Seeds. In NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference (pp. 279-290). (NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference). Association for Computational Linguistics (ACL).

Long, S. A., Marchioretto, P. V., Rodriguez-Zas, S. L., Womack, S. A., Lindsey, B. R., Matthews, G., Milner, D. J., Rubessa, M., & Wheeler, M. B. (2022). The effects of dominant follicle removal on quality of cumulus-oocyte complexes in half-blood Bos indicus × Bos taurus donor cattle. Reproduction, fertility, and development, 34(1/2), 303-304. https://doi.org/10.1071/RDv34n2Ab131

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