Skip to main content

Illinois IGB

Research Areas

Publications

Rogers-Lavanne, M. P., Bader, A. C., de Flamingh, A., Saboowala, S., Smythe, C., Atchison, B., Moulton, N., Wilson, A., Wildman, D. E., Boraas, A., Uddin, M., Worl, R., & Malhi, R. S. (2023). Association between gene methylation and experiences of historical trauma in Alaska Native peoples. International Journal for Equity in Health, 22(1), Article 182. https://doi.org/10.1186/s12939-023-01967-7

Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (2023). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences, 15(3), 545-561. https://doi.org/10.1007/s12561-021-09310-w

Santaliz-Casiano, A., Mehta, D., Danciu, O. C., Patel, H., Banks, L., Zaidi, A., Buckley, J., Rauscher, G. H., Schulte, L., Weller, L. R., Taiym, D., Liko-Hazizi, E., Pulliam, N., Friedewald, S. M., Khan, S., Kim, J. J., Gradishar, W., Hegerty, S., Frasor, J., ... Madak-Erdogan, Z. (2023). Identification of metabolic pathways contributing to ER+ breast cancer disparities using a machine-learning pipeline. Scientific reports, 13(1), Article 12136. https://doi.org/10.1038/s41598-023-39215-1

Park, J., Sorrells, J. E., Chaney, E. J., Abdelrahman, A. M., Yonkus, J. A., Leiting, J. L., Nelson, H., Harrington, J. J., Aksamitiene, E., Marjanovic, M., Groves, P. D., Bushell, C., Truty, M. J., & Boppart, S. A. (2023). In vivo label-free optical signatures of chemotherapy response in human pancreatic ductal adenocarcinoma patient-derived xenografts. Communications biology, 6(1), Article 980. https://doi.org/10.1038/s42003-023-05368-y

Wroblewski, T. H., Witt, K. E., Lee, S., Malhi, R. S., Peede, D., Huerta-Sánchez, E., Villanea, F. A., & Claw, K. G. (2023). Pharmacogenetic variation in Neanderthals and Denisovans and implications for human health and response to medications. Genome biology and evolution, 15(12), Article evad222. https://doi.org/10.1093/gbe/evad222

Anthony, D., Gunter, C. A., He, W., Khanafer, M., Landau, S., Mangar, R., & Reitinger, N. (2023). The HandyTech's Coming between 1 and 4: Privacy Opportunities and Challenges for the IoT Handyperson. In WPES 2023 - Proceedings of the 22nd Workshop on Privacy in the Electronic Society (pp. 129-134). (WPES 2023 - Proceedings of the 22nd Workshop on Privacy in the Electronic Society). Association for Computing Machinery. https://doi.org/10.1145/3603216.3624956

Sherkow, J. S., Park, J. K., & Lu, C. Y. (2023). Regulating Direct-to-Consumer Polygenic Risk Scores. JAMA - Journal of the American Medical Association, 330(8), 691-692. https://doi.org/10.1001/jama.2023.12262

Bader, A. C., Carbaugh, A. E., Davis, J. L., Krupa, K., & Malhi, R. S. (2023). Biological samples taken from Native American Ancestors are human remains under NAGPRA. American Journal of Biological Anthropology, 181(4), 527-534. https://doi.org/10.1002/ajpa.24726

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2023). Corrigendum to “Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter” [J. Archaeol. Sci. 105 (2019) 11–18, (S0305440318305661), (10.1016/j.jas.2019.02.006)]. Journal of Archaeological Science, 156, Article 105801. https://doi.org/10.1016/j.jas.2023.105801

David, L. T. (2023). Addressing the feasibility of people of African descent finding living African relatives using direct-to-consumer genetic testing. American Journal of Biological Anthropology, 181(2), 163-165. https://doi.org/10.1002/ajpa.24705

Aqil, A., Gill, S., Gokcumen, O., Malhi, R. S., Reese, E. A., Smith, J. L., Heaton, T. T., & Lindqvist, C. (2023). A paleogenome from a Holocene individual supports genetic continuity in Southeast Alaska. iScience, 26(5), Article 106581. https://doi.org/10.1016/j.isci.2023.106581

Mogol, A. N., Zuo, Q., Yoo, J. Y., Kaminsky, A. Z., Imir, O. B., Landesman, Y., Walker, C. J., & Madak erdogan, Z. (2023). NAD + Metabolism Generates a Metabolic Vulnerability in Endocrine-Resistant Metastatic Breast Tumors in Females. Endocrinology, Article bqad073. Advance online publication. https://doi.org/10.1210/endocr/bqad073

Kowal, E., Weyrich, L. S., Argüelles, J. M., Bader, A. C., Colwell, C., Cortez, A. D., Davis, J. L., Figueiro, G., Fox, K., Malhi, R. S., Matisoo-Smith, E., Nayak, A., Nelson, E. A., Nicholas, G., Nieves-Colón, M. A., Russell, L., Ulm, S., Vergara-Silva, F., Villanea, F. A., ... Tsosie, K. S. (2023). Community partnerships are fundamental to ethical ancient DNA research. Human Genetics and Genomics Advances, 4(2), Article 100161. https://doi.org/10.1016/j.xhgg.2022.100161

de Flamingh, A., Rivera-Colón, A. G., Gnoske, T. P., Kerbis Peterhans, J. C., Catchen, J., Malhi, R. S., & Roca, A. L. (2023). Numt Parser: automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera. Journal of Heredity, 114(2), 120-130. Article esac065. https://doi.org/10.1093/jhered/esac065

Sherkow, J. S., Adashi, E. Y., & Cohen, I. G. (2023). Assessing—and Extending—California’s Insulin Manufacturing Initiative. JAMA - Journal of the American Medical Association, 329(7), 533-534. https://doi.org/10.1001/jama.2023.0013

Lemley, M. A., & Sherkow, J. S. (2023). The Antibody Patent Paradox. Yale Law Journal, 132(4), 994-1064. https://doi.org/10.2139/ssrn.4032912

de Flamingh, A., Ishida, Y., Pečnerová, P., Vilchis, S., Siegismund, H. R., Van aarde, R. J., Malhi, R. S., & Roca, A. L. (2023). Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology. Frontiers in Genetics, 13, Article 1021004. https://doi.org/10.3389/fgene.2022.1021004

Xu, X., Wang, H., Lal, A., Gunter, C. A., & Li, B. (2023). EDoG: Adversarial Edge Detection for Graph Neural Networks. In Proceedings - 2023 IEEE Conference on Secure and Trustworthy Machine Learning, SaTML 2023 (pp. 291-305). (Proceedings - 2023 IEEE Conference on Secure and Trustworthy Machine Learning, SaTML 2023). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SaTML54575.2023.00027

Cortez, A. D., Lippert, D., Davis, J. L., Nicholas, G., Malhi, R. S., Weyrich, L. S., Claw, K. G., Bader, A. C., & Colwell, C. (in press). Extracting the practices of paleogenomics: A study of ancient DNA labs and research in relation to Native Americans and Indigenous peoples. American Journal of Biological Anthropology. https://doi.org/10.1002/ajpa.24714

Xu, X., Hao, Q., Yang, Z., Li, B., Liebovitz, D., Wang, G., & Gunter, C. A. (2023). How to Cover up Anomalous Accesses to Electronic Health Records. In 32nd USENIX Security Symposium, USENIX Security 2023 (pp. 229-246). (32nd USENIX Security Symposium, USENIX Security 2023; Vol. 1). USENIX Association.

Zuo, Q., Park, N. H., Lee, J. K., Santaliz-Casiano, A., & Madak-Erdogan, Z. (in press). Navigating nonalcoholic fatty liver disease (NAFLD): Exploring the roles of estrogens, pharmacological and medical interventions, and life style. Steroids, Article 109330. https://doi.org/10.1016/j.steroids.2023.109330

Qiu, H., Mao, W., Patke, A., Wang, C., Franke, H., Kalbarczyk, Z. T., Başar, T., & Iyer, R. K. (2022). SIMPPO: A Scalable and Incremental Online Learning Framework for Serverless Resource Management. In SoCC 2022 - Proceedings of the 13th Symposium on Cloud Computing (pp. 306-322). (SoCC 2022 - Proceedings of the 13th Symposium on Cloud Computing). Association for Computing Machinery. https://doi.org/10.1145/3542929.3563475

Erdogan, Z. M., & Hammes, S. R. (2022). Expanding Our Scope and Our Identity. Journal of the Endocrine Society, 6(11), [bvac149]. https://doi.org/10.1210/jendso/bvac149

Nelczyk, A. T., Ma, L., Gupta, A. D., Gamage, H. E. V., McHenry, M. T., Henn, M. A., Kadiri, M., Wang, Y., Krawczynska, N., Bendre, S., He, S., Shahoei, S. H., Madak-Erdogan, Z., Hsiao, S. H., Saleh, T., Carpenter, V., Gewirtz, D. A., Spinella, M. J., & Nelson, E. R. (2022). The nuclear receptor TLX (NR2E1) inhibits growth and progression of triple- negative breast cancer. Biochimica et Biophysica Acta - Molecular Basis of Disease, 1868(11), [166515]. https://doi.org/10.1016/j.bbadis.2022.166515

Wilson, R. F. (2022). Harm, Not Privilege. Review of: John Adenitire A General Right to Conscientious Exemption: Beyond Religious Privilege (Cambridge University Press, 2020). Keele Law Review, 4. https://ssrn.com/abstract=4227150

Ksiazkiewicz, A., & Erol, F. (2022). Corrigendum for “Too tired to vote: A multi-national comparison of election turnout with sleep preferences and behaviors” [Elect. Stud., 78 (2022), 102491] (Electoral Studies (2022) 78, (S0261379422000518), (10.1016/j.electstud.2022.102491)). Electoral Studies, 79, [102514]. https://doi.org/10.1016/j.electstud.2022.102514

Ksiazkiewicz, A. (2022). Sleeping giant: A research agenda for politics and chronobiology. Politics and the Life Sciences, 41(2), 298-302. https://doi.org/10.1017/pls.2022.16

Ksiazkiewicz, A., & Erol, F. (2022). Too tired to vote: A multi-national comparison of election turnout with sleep preferences and behaviors. Electoral Studies, 78, [102491]. https://doi.org/10.1016/j.electstud.2022.102491

Sherkow, J. S. (2022). Writing Definitions in Rewriting Nature: Lessons from FDA Law. Boston University Law Review Online, 102. https://ssrn.com/abstract=4155715

Ouellette, L. L., Price II, W. N., Sachs, R., & Sherkow, J. S. (2022). Innovation Institutions and COVID-19, Part II. https://doi.org/10.2139/ssrn.4149035

Esiner, E., Tefek, U., Erol, H. S. M., Mashima, D., Chen, B., Hu, Y. C., Kalbarczyk, Z., & Nicol, D. M. (2022). LoMoS: Less-Online/More-Offline Signatures for Extremely Time-Critical Systems. IEEE Transactions on Smart Grid, 13(4), 3214-3226. https://doi.org/10.1109/TSG.2022.3156897

Bailey, R. L., Dog, T. L., Smith-Ryan, A. E., Das, S. K., Baker, F. C., Madak-Erdogan, Z., Hammond, B. R., Sesso, H. D., Eapen, A., Mitmesser, S. H., Wong, A., & Nguyen, H. (2022). Sex Differences Across the Life Course: A Focus On Unique Nutritional and Health Considerations among Women. Journal of Nutrition, 152(7), 1597-1610. https://doi.org/10.1093/jn/nxac059

Ma, L., Vidana Gamage, H. E., Tiwari, S., Han, C., Henn, M. A., Krawczynska, N., Dibaeinia, P., Koelwyn, G. J., Das Gupta, A., Bautista Rivas, R. O., Wright, C. L., Xu, F., Moore, K. J., Sinha, S., & Nelson, E. R. (2022). The Liver X Receptor Is Selectively Modulated to Differentially Alter Female Mammary Metastasis-associated Myeloid Cells. Endocrinology (United States), 163(7), [bqac072]. https://doi.org/10.1210/endocr/bqac072

Boyd, R. I., Ahmad, S., Singh, R., Fazal, Z., Prins, G. S., Erdogan, Z. M., Irudayaraj, J., & Spinella, M. J. (2022). Toward a Mechanistic Understanding of Poly-and Perfluoroalkylated Substances and Cancer. Cancers, 14(12), [2919]. https://doi.org/10.3390/cancers14122919

Zuo, Q., Park, N. H., Lee, J. K., & Madak Erdogan, Z. (2022). Liver Metastatic Breast Cancer: Epidemiology, Dietary Interventions, and Related Metabolism. Nutrients, 14(12). https://doi.org/10.3390/nu14122376

Zuo, Q., Mogol, A. N., Liu, Y. J., Casiano, A. S., Chien, C., Drnevich, J., Imir, O. B., Kulkoyluoglu-Cotul, E., Park, N. H., Shapiro, D. J., Park, B. H., Ziegler, Y., Katzenellenbogen, B. S., Aranda, E., O’Neill, J. D., Raghavendra, A. S., Tripathy, D., & Erdogan, Z. M. (2022). Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy. Molecular Cancer Research, 20(6), 923-937. https://doi.org/10.1158/1541-7786.MCR-21-0781

Bhogale, S., & Sinha, S. (2022). Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding. iScience, 25(5), [104152]. https://doi.org/10.1016/j.isci.2022.104152

Santaliz Casiano, A., Lee, A., Teteh, D., Madak Erdogan, Z., & Treviño, L. (2022). Endocrine-Disrupting Chemicals and Breast Cancer: Disparities in Exposure and Importance of Research Inclusivity. Endocrinology (United States), 163(5), [bqac034]. https://doi.org/10.1210/endocr/bqac034

Maino Vieytes, C. A., Rodriguez-Zas, S. L., Madak-Erdogan, Z., Smith, R. L., Zarins, K. R., Wolf, G. T., Rozek, L. S., Mondul, A. M., & Arthur , A. E. (2022). Adherence to a priori-Defined Diet Quality Indices Throughout the Early Disease Course Is Associated With Survival in Head and Neck Cancer Survivors: An Application Involving Marginal Structural Models. Frontiers in Nutrition, 9, [791141]. https://doi.org/10.3389/fnut.2022.791141

Qiu, H., Mao, W., Patke, A., Wang, C., Franke, H., Kalbarczyk, Z. T., Başar, T., & Iyer, R. K. (2022). Reinforcement learning for resource management in multi-Tenant serverless platforms. In EuroMLSys 2022 - Proceedings of the 2nd European Workshop on Machine Learning and Systems (pp. 20-28). (EuroMLSys 2022 - Proceedings of the 2nd European Workshop on Machine Learning and Systems). Association for Computing Machinery. https://doi.org/10.1145/3517207.3526971

Sherkow, J. S. (2022). Immaculate Conception? Priority and Invention in the CRISPR Patent Dispute. CRISPR Journal, 5(2), 174-180. https://doi.org/10.1089/crispr.2022.0033

Severson, A. L., Byrd, B. F., Mallott, E. K., Owings, A. C., DeGiorgio, M., de Flamingh, A., Nijmeh, C., Arellano, M. V., Leventhal, A., Rosenberg, N. A., & Malhi, R. S. (2022). Ancient and modern genomics of the Ohlone Indigenous population of California. Proceedings of the National Academy of Sciences, 119(13), e2111533119. [e2111533119]. https://doi.org/10.1073/pnas.2111533119

Cohen, I. G., Sherkow, J. S., & Adashi, E. Y. (2022). Handle with Care: The WHO Report on Human Genome Editing. Hastings Center Report, 52(2), 10-14. https://doi.org/10.1002/hast.1350

Hu, W. Y., Lu, R., Hu, D. P., Imir, O. B., Zuo, Q., Moline, D., Afradiasbagharani, P., Liu, L., Lowe, S., Birch, L., Griend, D. J. V., Madak-Erdogan, Z., & Prins, G. S. (2022). Per- and polyfluoroalkyl substances target and alter human prostate stem-progenitor cells. Biochemical Pharmacology, 197, [114902]. https://doi.org/10.1016/j.bcp.2021.114902

Sherkow, J. S. (2022). Preprint servers and patent prior art: Preprints can jeopardize the patentability of an invention. EMBO Reports, 23(2), [e54439]. https://doi.org/10.15252/embr.202154439

Seward, C. H., Saul, M. C., Troy, J. M., Dibaeinia, P., Zhang, H., Sinha, S., & Stubbs, L. J. (2022). An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice. PloS one, 17(2 February), [e0263632]. https://doi.org/10.1371/journal.pone.0263632

Sherkow, J. S., Barker, K. B., Braverman, I., Cook-Deegan, R., Durbin, R., Easter, C. L., Goldstein, M. M., Hudson, M., Kress, W. J., Lewin, H. A., Mathews, D. J. H., McCarthy, C., McCartney, A. M., da Silva, M., Torrance, A. W., & Greely, H. T. (2022). Ethical, legal, and social issues in the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115859119]. https://doi.org/10.1073/pnas.2115859119

Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., ... Zhang, G. (2022). The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115635118]. https://doi.org/10.1073/pnas.2115635118

Friesen, P., Wilson, R. F., Kim, S., & Goedken, J. (2022). Consent for Intimate Exams on Unconscious Patients: Sharpening Legislative Efforts. Hastings Center Report, 52(1), 28-31. https://doi.org/10.1002/hast.1337

Hudson, C. M., Pattengale, N. D., Iyer, R. K., Kalbarczyk, Z. T., & Alli, N. (2022). Genomic and Synthetic Biology Digital Biosecurity. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 27, 402-406.

Sherkow, J. S. (2022). Regulatory Sandboxes and the Public Health. University of Illinois Law Review, 2022(1), 357-410. http://hdl.handle.net/2142/113404

Wilson, R. F. (2022). Cleaving Marriage and the State. In N. Palazzo, & J. A. Redding (Eds.), Queer and Religious Alliances in Family Law Politics and Beyond Anthem Press.

Patke, A., Qiu, H., Jha, S., Venugopal, S., Gazzetti, M., Pinto, C., Kalbarczyk, Z., & Iyer, R. (2022). Evaluating Hardware Memory Disaggregation under Delay and Contention. In Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2022 (pp. 1221-1227). (Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/IPDPSW55747.2022.00210

Jha, S., Cui, S., Tsai, T., Hari, S. K. S., Sullivan, M. B., Kalbarczyk, Z. T., Keckler, S. W., & Iyer, R. K. (2022). Exploiting Temporal Data Diversity for Detecting Safety-critical Faults in AV Compute Systems. In Proceedings - 52nd Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2022 (pp. 88-100). (Proceedings - 52nd Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DSN53405.2022.00021

Wilson, R. F. (2022). Fairness as a Path Forward on LGBTQ Rights and Religious Liberty. In C. Seiple, & D. R. Hoover (Eds.), The Routledge Handbook of Relgious Literacy, Pluralism, and Global Engagement (pp. 416-425). Routledge.

Gowrisankar, B., Mashima, D., Ong, W., Ye, Q., Esiner, E., Chen, B., & Kalbarczyk, Z. (2022). GateKeeper: Operator-centric Trusted App Management Framework on ARM TrustZone. In 2022 IEEE Conference on Communications and Network Security, CNS 2022 (pp. 100-108). (2022 IEEE Conference on Communications and Network Security, CNS 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CNS56114.2022.9947233

Yarlagadda, K., Zachwieja, A. J., de Flamingh, A., Phungviwatnikul, T., Rivera-Colón, A. G., Roseman, C., Shackelford, L., Swanson, K. S., & Malhi, R. S. (2022). Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes. Proceedings of the Royal Society B: Biological Sciences, 289(1974), [20220052]. https://doi.org/10.1098/rspb.2022.0052

Jung, S., & Ksiazkiewicz, A. (2022). Implicit and explicit state attachment among single and dual American citizens. Politics, Groups, and Identities, 10(2), 295-314. https://doi.org/10.1080/21565503.2020.1789884

Friesen, A., Ksiazkiewicz, A., & McDermott, R. (2022). Introduction to the Special Issue-Life Science in Politics: Methodological Innovations and Political Issues. Politics and the Life Sciences, 41(2), 155-160. https://doi.org/10.1017/pls.2022.17

Ksiazkiewicz, A., & Erol, F. (2022). Linking sleep, political ideology, and religious observance: a multi-national comparison. International Journal of Public Opinion Research, 34(3), [edac020]. https://doi.org/10.1093/ijpor/edac020

Mitra, C., Yoo, J. Y., Madak-Erdogan, Z., & Soliman, A. S. (2022). Spatial Analysis of Tumor Heterogeneity Using Machine Learning Techniques. In Proceedings - 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2022 (pp. 781-786). (Proceedings - 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/MASS56207.2022.00123

Wilson, R. F. (2022). The COVID-19 Worship Cases Lessons for Governors in Democratic Governance and Transparency over "Edicts". University of St. Thomas Law Journal, 18(2), 422-509. https://ir.stthomas.edu/ustlj/vol18/iss2/8/

Qiu, H., Jha, S., Banerjee, S. S., Patke, A., Wang, C., Hubertus, F., Kalbarczyk, Z. T., & Iyer, R. K. (2021). Is Function-as-a-Service a Good Fit for Latency-Critical Services? In Proceedings of the 7th International Workshop on Serverless Computing, WoSC 2021 (pp. 1-8). (Proceedings of the 7th International Workshop on Serverless Computing, WoSC 2021). Association for Computing Machinery. https://doi.org/10.1145/3493651.3493666

Zuo, Q., Band, S., Kesavadas, M., & Madak Erdogan, Z. (2021). Obesity and Postmenopausal Hormone Receptor-positive Breast Cancer: Epidemiology and Mechanisms. Endocrinology (United States), 162(12), [bqab195]. https://doi.org/10.1210/endocr/bqab195

Ghaffari, S., Hanson, C., Schmidt, R. E., Bouchonville, K. J., Offer, S. M., & Sinha, S. (2021). An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes. Genome biology, 22(1), [19]. https://doi.org/10.1186/s13059-020-02213-x

Witt, K. E., Yarlagadda, K., Allen, J. M., Bader, A. C., Simon, M. L., Kuehn, S. R., Swanson, K. S., Cross, T. W. L., Hedman, K. M., Ambrose, S. H., & Malhi, R. S. (2021). Author Correction: Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet (Scientific Reports, (2021), 11, 1, (3113), 10.1038/s41598-021-82362-6). Scientific reports, 11(1), [11445]. https://doi.org/10.1038/s41598-021-90889-x

Emad, A., & Sinha, S. (2021). Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. npj Systems Biology and Applications, 7(1), [9]. https://doi.org/10.1038/s41540-021-00169-7

Witt, K. E., Yarlagadda, K., Allen, J. M., Bader, A. C., Simon, M. L., Kuehn, S. R., Swanson, K. S., Cross, T. W. L., Hedman, K. M., Ambrose, S. H., & Malhi, R. S. (2021). Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet. Scientific reports, 11(1), [3113]. https://doi.org/10.1038/s41598-021-82362-6

Robison, H. M., Chapman, C. A., Zhou, H., Erskine, C. L., Theel, E., Peikert, T., Lindestam Arlehamn, C. S., Sette, A., Bushell, C., Welge, M., Zhu, R., Bailey, R. C., & Escalante, P. (2021). Risk assessment of latent tuberculosis infection through a multiplexed cytokine biosensor assay and machine learning feature selection. Scientific reports, 11(1), [20544]. https://doi.org/10.1038/s41598-021-99754-3

D'Agnillo, F., Walters, K. A., Xiao, Y., Sheng, Z. M., Scherler, K., Park, J., Gygli, S., Rosas, L. A., Sadtler, K., Kalish, H., Blatti, C. A., Zhu, R., Gatzke, L., Bushell, C., Memoli, M. J., O'Day, S. J., Fischer, T. D., Hammond, T. C., Lee, R. C., ... Taubenberger, J. K. (2021). Lung epithelial and endothelial damage, loss of tissue repair, inhibition of fibrinolysis, and cellular senescence in fatal COVID-19. Science Translational Medicine, 13(620), [abj7790]. https://doi.org/10.1126/scitranslmed.abj7790

Imir, O. B., Kaminsky, A. Z., Zuo, Q-Y., Liu, Y-J., Singh, R., Spinella, M. J., Irudayaraj, J., Hu, W-Y., Prins, G. S., & Madak Erdogan, Z. (2021). Per- and Polyfluoroalkyl Substance Exposure Combined with High-Fat Diet Supports Prostate Cancer Progression. Nutrients, 13(11), [3902]. https://doi.org/10.3390/nu13113902

Yarlagadda, K., Razik, I., Malhi, R. S., & Carter, G. G. (2021). Social convergence of gut microbiomes in vampire bats. Biology Letters, 17(11), 20210389. [20210389]. https://doi.org/10.1098/rsbl.2021.0389

Barton, M., Frigo, D. E., Madak-Erdogan, Z., Mauvais-Jarvis, F., & Prossnitz, E. R. (2021). Steroid Hormones and Receptors in Health and Disease: A Research Conference Co-Organized by FASEB and the International Committee on Rapid Responses to Steroid Hormones (RRSH), May 25-27, 2021. FASEB Journal, 35(11), [e21858]. https://doi.org/10.1096/fj.202101228

Dibaeinia, P., & Sinha, S. (2021). Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks. Nucleic acids research, 49(18), 10309-10327. https://doi.org/10.1093/nar/gkab765

Zuo, Q., Chen, K. L., Eve, A. A., Liu, Y. J., Kim, S. H., Katzenellenbogen, B. S., Katzenellenbogen, J. A., & Madak-Erdogan, Z. (2021). Pathway preferential estrogens prevent hepatosteatosis due to ovariectomy and high−fat diets. Nutrients, 13(10), [3334]. https://doi.org/10.3390/nu13103334

Sherkow, J. S., Adashi, E. Y., & Cohen, I. G. (2021). Governing Human Germline Editing Through Patent Law. JAMA - Journal of the American Medical Association, 326(12), 1149-1150. https://doi.org/10.1001/jama.2021.13824

Xie, X., Kendzior, M. C., Ge, X., Mainzer, L. S., & Sinha, S. (2021). VarSAn: Associating Pathways with a Set of Genomic Variants Using Network Analysis. Nucleic acids research, 49(15), 8471-8487. https://doi.org/10.1093/nar/gkab624

Scheinerman, N., & Sherkow, J. S. (2021). Governance Choices of Genome Editing Patents. Frontiers in Political Science, 3, [745898]. https://doi.org/10.3389/fpos.2021.745898

Cortez, N., & Sherkow, J. S. (2021). Presidential Administration and FDA Guidance: A New Hope. University of Illinois Law Review Online, 2021, 179-183. https://ssrn.com/abstract=3899452

Rahman-Enyart, A., Yang, W., Yaggie, R. E., White, B. A., Welge, M., Auvil, L., Berry, M., Bushell, C., Rosen, J. M., Rudick, C. N., Schaeffer, A. J., & Klumpp, D. J. (2021). Acyloxyacyl hydrolase is a host determinant of gut microbiome-mediated pelvic pain. American Journal of Physiology - Regulatory Integrative and Comparative Physiology, 321(3), R396-R412. https://doi.org/10.1152/ajpregu.00106.2021

Kim, S., Wilson, R. F., Jostrand, T., & Mirza, A. (2021). Pandemic Behind Bars. https://doi.org/10.2139/ssrn.3888415

Friesen, A., Ksiazkiewicz, A., & Gothreau, C. (2021). Political taste: Exploring how perception of bitter substances may reveal risk tolerance and political preferences. Politics and the Life Sciences, 40(2), 152-171. https://doi.org/10.1017/pls.2021.20

Wilson, R. F., Zellner, M., & Zandiatashbar, A. (2021). Visualizing Vulnerability and Capturing the Pandemic's Human Toll. (University of Illinois College of Law Legal Studies Research Paper; No. 21-19). https://doi.org/10.2139/ssrn.3888403

Sherkow, J. S., & Zettler, P. J. (2021). EpiPen, Patents, and Life and Death. New York University Law Review Online, 164-180. http://hdl.handle.net/2142/110345

Guerrini, C., Sherkow, J. S., & Zettler, P. J. (2021). Finding a Regulatory Balance for Genetic Biohacking. In I. G. Cohen, N. A. Farahany, H. T. Greely, & C. Shachar (Eds.), Consumer Genetic Technologies: Ethical and Legal Considerations (pp. 157-168). Cambridge University Press. https://doi.org/10.1017/9781108874106.016

Bosley, K., Casebourn, C., Chan, P., Chen, J., Chen, M., Church, G., Cumbers, J., de Wouters, T., Dewey-Hagborg, H., Duportet, X., Ene-Obong, A., Elizondo, A., Farrar, J., Gates, B., Gatto, F., Giwa, S., Godec, J., Gold, S., LeProust, E., ... Zhao, B. (2021). Publisher Correction: Voices of biotech leaders (Nature Biotechnology, (2021), 39, 6, (654-660), 10.1038/s41587-021-00941-4). Nature Biotechnology, 39(8), 1017. https://doi.org/10.1038/s41587-021-01000-8

Baek, A. E., Krawczynska, N., Das Gupta, A., Dvoretskiy, S. V., You, S., Park, J., Deng, Y-H., Sorrells, J. E., Smith, B. P., Ma, L., Nelson, A. T., McDowell, H. B., Sprenger, A., Henn, M. A., Madak-Erdogan, Z., Kong, H., Boppart, S. A., Boppart, M. D., & Nelson, E. R. (2021). The Cholesterol Metabolite 27HC Increases Secretion of Extracellular Vesicles Which Promote Breast Cancer Progression. Endocrinology, 162(7), [bqab095]. https://doi.org/10.1210/endocr/bqab095

Marciniak, S., Mughal, M. R., Godfrey, L. R., Bankoff, R. J., Randrianatoandro, H., Crowley, B. E., Bergey, C. M., Muldoon, K. M., Randrianasy, J., Raharivololona, B. M., Schuster, S. C., Malhi, R. S., Yoder, A. D., Louis, E. E., Kistler, L., & Perry, G. H. (2021). Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, “subfossil” koala lemur Megaladapis edwardsi. Proceedings of the National Academy of Sciences, 118(26), [117118]. https://doi.org/10.1073/pnas.2022117118

Chung, K., Li, X., Tang, P., Zhu, Z., Kalbarczyk, Z. T., Kesavadas, T., & Iyer, R. K. (2021). Machine learning in the hands of a malicious adversary: A near future if not reality. In Game Theory and Machine Learning for Cyber Security (pp. 289-316). John Wiley & Sons, Ltd..

Sachs, R., Ouellette, L. L., Price II, W. N., & Sherkow, J. S. (2021). Innovation Law and COVID-19: Promoting Incentives and Access for New Healthcare Technologies. (University of Illinois College of Law Legal Studies Research Paper; No. 21-14). https://ssrn.com/abstract=3855608

Patke, A., Jha, S., Qiu, H., Brandt, J., Gentile, A., Greenseid, J., Kalbarczyk, Z. T., & Iyer, R. K. (2021). Delay sensitivity-driven congestion mitigation for HPC systems. In ICS 2021 - Proceedings of the 2021 ACM International Conference on Supercomputing (pp. 342-353). (Proceedings of the International Conference on Supercomputing). Association for Computing Machinery. https://doi.org/10.1145/3447818.3460362

Bosley, K., Casebourn, C., Chan, P., Chen, J., Chen, M., Church, G., Cumbers, J., de Wouters, T., Dewey-Hagborg, H., Duportet, X., Ene-Obong, A., Elizondo, A., Farrar, J., Gates, B., Gatto, F., Giwa, S., Godec, J., Gold, S., LeProust, E., ... Zhao, B. (2021). Voices of biotech leaders. Nature Biotechnology, 39(6), 654-660. https://doi.org/10.1038/s41587-021-00941-4

Ksiazkiewicz, A., & Friesen, A. (2021). The Higher Power of Religiosity Over Personality on Political Ideology. Political Behavior, 43(2), 637-661. https://doi.org/10.1007/s11109-019-09566-5

You, S., Chaney, E. J., Tu, H., Sun, Y., Sinha, S., & Boppart, S. A. (2021). Label-free deep profiling of the tumor microenvironment. Cancer Research, 81(9), 2534-2544. https://doi.org/10.1158/0008-5472.CAN-20-3124

The AIRR Community (2021). Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling. eLife, 10, [e66274]. https://doi.org/10.7554/eLife.66274

Xu, X., Wang, Q., Li, H., Borisov, N., Gunter, C. A., & Li, B. (2021). Detecting AI trojans using meta neural analysis. In Proceedings - 2021 IEEE Symposium on Security and Privacy, SP 2021 (pp. 103-120). (Proceedings - IEEE Symposium on Security and Privacy; Vol. 2021-May). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SP40001.2021.00034

Arredondo Eve, A., Tunc, E., Liu, Y-J., Agrawal, S., Erbak Yilmaz, H., Emren, S. V., Akyıldız Akçay, F., Mainzer, L., Žurauskienė, J., & Madak Erdogan, Z. (2021). Identification of Circulating Diagnostic Biomarkers for Coronary Microvascular Disease in Postmenopausal Women Using Machine-Learning Techniques. Metabolites, 11(6), [339]. https://doi.org/10.3390/metabo11060339

Banerjee, S. S., Jha, S., Kalbarczyk, Z., & Iyer, R. K. (2021). BayesPerf: Minimizing performance monitoring errors using Bayesian statistics. In Proceedings of the 26th ACM International Conference on Architectural Support for Programming Languages and Operating Systems, ASPLOS 2021 (pp. 832-844). (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS). Association for Computing Machinery. https://doi.org/10.1145/3445814.3446739

Ouellette, L. L., Price II, W. N., Sachs, R., & Sherkow, J. S. (2021). Innovation Institutions and COVID-19. (University of Illinois College of Law Legal Studies Research Paper; No. 21-09). https://doi.org/10.2139/ssrn.3826687

Capodiferro, M. R., Aram, B., Raveane, A., Rambaldi Migliore, N., Colombo, G., Ongaro, L., Rivera, J., Mendizábal, T., Hernández-Mora, I., Tribaldos, M., Perego, U. A., Li, H., Scheib, C. L., Modi, A., Gòmez-Carballa, A., Grugni, V., Lombardo, G., Hellenthal, G., Pascale, J. M., ... Achilli, A. (2021). Archaeogenomic distinctiveness of the Isthmo-Colombian area. Cell, 184(7), 1706-1723.e24. https://doi.org/10.1016/j.cell.2021.02.040

Sikora, M. J., Riggins, R. B., & Madak-Erdogan, Z. (2021). Making an IMPACT on Career Development for Early- And Mid-career Faculty. Endocrinology (United States), 162(3), [bqaa247]. https://doi.org/10.1210/endocr/bqaa247

Ksiazkiewicz, A. (2021). Political ideology and diurnal associations. Politics and the Life Sciences, 40(1), 56-71. https://doi.org/10.1017/pls.2021.4

Perri, A. R., Feuerborn, T. R., Frantz, L. A. F., Larson, G., Malhi, R. S., Meltzer, D. J., & Witt, K. E. (2021). Dog domestication and the dual dispersal of people and dogs into the Americas. Proceedings of the National Academy of Sciences of the United States of America, 118(6), [e2010083118]. https://doi.org/10.1073/pnas.2010083118

de Flamingh, A., Coutu, A., Sealy, J., Chirikure, S., Bastos, A. D. S., Libanda-Mubusisi, N. M., Malhi, R. S., & Roca, A. L. (2021). Sourcing Elephant Ivory from a Sixteenth-Century Portuguese Shipwreck. Current Biology, 31(3), 621-628.e4. https://doi.org/10.1016/j.cub.2020.10.086

Shinn, L. M., Li, Y., Mansharamani, A., Auvil, L. S., Welge, M. E., Bushell, C. B., Khan, N. A., Charron, C. S., Novotny, J. A., Baer, D. J., Zhu, R., & Holscher, H. D. (2021). Fecal Bacteria as Biomarkers for Predicting Food Intake in Healthy Adults. The Journal of nutrition, 151(2), 423-433. https://doi.org/10.1093/jn/nxaa285

Smith, B. P., Cardoso-Mendoza, E., Flaws, J. A., Madak-Erdogan, Z., & Smith, R. L. (2021). Racial Differences in Lifestyle, Demographic, and Health Factors Associated with Quality of Life (QoL) in Midlife Women. Women's midlife health, 7(1), 2. https://doi.org/10.1186/s40695-020-00060-1

Wadlington, W., O'Brien, R. C., & Wilson, R. F. (2021). Domestic relations: cases and materials. (Ninth edition. ed.) (University casebook series). Foundation Press.

Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (Accepted/In press). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences. https://doi.org/10.1007/s12561-021-09310-w

Wadlington, W., O'Brien, R. C., & Wilson, R. F. (2021). Family Law in Perspective. (5 ed.) (Concepts and Insights). Foundation Press. https://subscription.westacademic.com/Book/Detail/27527

Wilson, R. F., Cakan, A., & Noon, M-J. (2021). FROM BIGOTRY TO TOLERANCE: Who’s the Bigot? Learning from Conflicts over Marriage and Civil Rights Law. By Linda C. McClain. Journal of Law and Religion, 36(2), 348-357. https://doi.org/10.1017/jlr.2021.46

Long, Y., Wang, B., Yang, Z., Kailkhura, B., Zhang, A., Gunter, C. A., & Li, B. (2021). G-PATE: Scalable Differentially Private Data Generator via Private Aggregation of Teacher Discriminators. In MA. Ranzato, A. Beygelzimer, Y. Dauphin, P. S. Liang, & J. Wortman Vaughan (Eds.), Advances in Neural Information Processing Systems 34 - 35th Conference on Neural Information Processing Systems, NeurIPS 2021 (pp. 2965-2977). (Advances in Neural Information Processing Systems; Vol. 4). Neural information processing systems foundation.

Macintosh, K. L., Cohen, I. G., Sherkow, J. S., & Adashi, E. Y. (2021). Letter to the Editor. The Journal of law, medicine & ethics : a journal of the American Society of Law, Medicine & Ethics, 49(1), 156-157. https://doi.org/10.1017/jme.2021.21