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Carl R. Woese Institute for Genomic Biology

Where Science Meets Society

Research Areas

Neu, L., Bänziger, C., Proctor, C. R., Zhang, Y., Liu, W. T., & Hammes, F. (2018). Ugly ducklings - The dark side of plastic materials in contact with potable water. npj Biofilms and Microbiomes, 4(1), [7]. DOI: 10.1038/s41522-018-0050-9

Chen, S., Li, W., Xie, X., Brechtl, J., Chen, B., Li, P., ... Liaw, P. K. (2018). Nanoscale serration and creep characteristics of Al0.5CoCrCuFeNi high-entropy alloys. Journal of Alloys and Compounds, 752, 464-475. DOI: 10.1016/j.jallcom.2018.04.137

Liu, G., Zhang, Y., van der Mark, E., Magic-Knezev, A., Pinto, A., van den Bogert, B., ... Medema, G. (2018). Assessing the origin of bacteria in tap water and distribution system in an unchlorinated drinking water system by SourceTracker using microbial community fingerprints. Water Research, 138, 86-96. DOI: 10.1016/j.watres.2018.03.043

Cassidy, C. K., Himes, B. A., Luthey-Schulten, Z., & Zhang, P. (2018). CryoEM-based hybrid modeling approaches for structure determination. Current Opinion in Microbiology, 43, 14-23. DOI: 10.1016/j.mib.2017.10.002

Ling, F., Whitaker, R., LeChevallier, M. W., & Liu, W. T. (2018). Drinking water microbiome assembly induced by water stagnation. ISME Journal, 12(6), 1520-1531. DOI: 10.1038/s41396-018-0101-5

D'Andrea, R., Ostling, A., & O'Dwyer, J. P. (2018). Translucent windows: how uncertainty in competitive interactions impacts detection of community pattern. Ecology Letters, 21(6), 826-835. DOI: 10.1111/ele.12946

Harris, S. C., Devendran, S., Méndez- García, C., Mythen, S. M., Wright, C. L., Fields, C. J., ... Ridlon, J. M. (Accepted/In press). Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243T Gut microbes, 1-17. DOI: 10.1080/19490976.2018.1458180

Tang, Q., Lu, T., & Liu, S. J. (2018). Engineering the bacterium Comamonas testosteroni CNB-1: Plasmid curing and genetic manipulation. Biochemical Engineering Journal, 133, 74-82. DOI: 10.1016/j.bej.2018.01.030

Vachaspati, P., & Warnow, T. (2018). SIESTA: Enhancing searches for optimal supertrees and species trees. BMC genomics, 19, [252]. DOI: 10.1186/s12864-018-4621-1

Nute, M., Chou, J., Molloy, E. K., & Warnow, T. (2018). The performance of coalescent-based species tree estimation methods under models of missing data. BMC genomics, 19, [286]. DOI: 10.1186/s12864-018-4619-8

Nishihama, K., Yasuma, T., Yano, Y., D' Alessandro-Gabazza, C. N., Toda, M., Hinneh, J. A., ... Gabazza, E. C. (2018). Anti-apoptotic activity of human matrix metalloproteinase-2 attenuates diabetes mellitus. Metabolism: Clinical and Experimental, 82, 88-99. DOI: 10.1016/j.metabol.2018.01.016

Cao, P., Dahmen, K. A., Kushima, A., Wright, W. J., Park, H. S., Short, M. P., & Yip, S. (2018). Nanomechanics of slip avalanches in amorphous plasticity. Journal of the Mechanics and Physics of Solids, 114, 158-171. DOI: 10.1016/j.jmps.2018.02.012

Fung, T., O'Dwyer, J. P., & Chisholm, R. A. (2018). Quantifying species extinction risk under temporal environmental variance. Ecological Complexity, 34, 139-146. DOI: 10.1016/j.ecocom.2017.09.006

Chen, S., Xie, X., Li, W., Feng, R., Chen, B., Qiao, J., ... Liaw, P. K. (2018). Temperature effects on the serrated behavior of an Al0.5CoCrCuFeNi high-entropy alloy. Materials Chemistry and Physics, 210, 20-28. DOI: 10.1016/j.matchemphys.2017.09.004

Coleman, J. P., Dahmen, K. A., & Weaver, R. L. (2018). Avalanches and scaling collapse in the large- N Kuramoto model. Physical Review E, 97(4), [042219]. DOI: 10.1103/PhysRevE.97.042219

Melo, M. C. R., Bernardi, R. C., Rudack, T., Scheurer, M., Riplinger, C., Phillips, J. C., ... Luthey-Schulten, Z. (2018). NAMD goes quantum: An integrative suite for hybrid simulations. Nature methods, 15(5), 351-354. DOI: 10.1038/nmeth.4638

Bronski, J. C., Deville, L., Ferguson, T., & Livesay, M. (2018). Stable configurations in social networks. Nonlinearity, 31(6), 2518-2531. DOI: 10.1088/1361-6544/aab0b5

Earnest, T. M., Cole, J. A., & Luthey-Schulten, Z. (2018). Simulating biological processes: Stochastic physics from whole cells to colonies. Reports on Progress in Physics, 81(5), [052601]. DOI: 10.1088/1361-6633/aaae2c

Lao, Y., Caravelli, F., Sheikh, M., Sklenar, J., Gardeazabal, D., Watts, J. D., ... Schiffer, P. (Accepted/In press). Classical topological order in the kinetics of artificial spin ice. Nature Physics, 1-5. DOI: 10.1038/s41567-018-0077-0

Mythen, S. M., Devendran, S., Méndez-García, C., Cann, I., & Ridlon, J. M. (2018). Targeted synthesis and characterization of a gene cluster encoding NAD(P)H-dependent 3α-, 3β-, and 12α-hydroxysteroid dehydrogenases from Eggerthella CAG: 298, a gut metagenomic sequence. Applied and Environmental Microbiology, 84(7), [e02475-17]. DOI: 10.1128/AEM.02475-17

Christensen, S., Molloy, E. K., Vachaspati, P., & Warnow, T. (2018). OCTAL: Optimal Completion of gene trees in polynomial time. Algorithms for Molecular Biology, 13(1), [6]. DOI: 10.1186/s13015-018-0124-5

Raulo, A., Ruokolainen, L., Lane, A., Amato, K., Knight, R., Leigh, S., ... Tecot, S. R. (2018). Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality. Journal of Animal Ecology, 87(2), 388-399. DOI: 10.1111/1365-2656.12781

Molloy, E. K., & Warnow, T. (2018). To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods. Systematic Biology, 67(2), 285-303. DOI: 10.1093/sysbio/syx077

Munson-McGee, J. H., Peng, S., Dewerff, S., Stepanauskas, R., Whitaker, R. J., Weitz, J. S., & Young, M. J. (Accepted/In press). A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments. ISME Journal, 1-9. DOI: 10.1038/s41396-018-0071-7

Gernat, T., Rao, V. D., Middendorf, M., Dankowicz, H., Goldenfeld, N., & Robinson, G. E. (2018). Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honeybee social networks. Proceedings of the National Academy of Sciences of the United States of America, 115(7), 1433-1438. DOI: 10.1073/pnas.1713568115

Blanchard, A. E., Liao, C., & Lu, T. (2018). Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch. Biophysical journal, 114(3), 737-746. DOI: 10.1016/j.bpj.2017.12.010

Chen, S. H., Domel, A., Yue, T. M., Tsui, C. P., Chan, K. C., Dahmen, K. A., & Liaw, P. K. (2018). Deformation behavior of bulk metallic glasses under a mixed-mode (I/II) loading condition. Intermetallics, 93, 148-154. DOI: 10.1016/j.intermet.2017.12.004

Fang, T., Cui, Q., Huang, Y., Dong, P., Wang, H., Liu, W. T., & Ye, Q. (2018). Distribution comparison and risk assessment of free-floating and particle-attached bacterial pathogens in urban recreational water: Implications for water quality management. Science of the Total Environment, 613-614, 428-438. DOI: 10.1016/j.scitotenv.2017.09.008

Chen, P. Y., Lee, C., Wang, S. Y., Seifi, M., Lewandowski, J. J., Dahmen, K. A., ... Liaw, P. K. (2018). Fatigue behavior of high-entropy alloys: A review. Science China Technological Sciences, 61(2), 168-178. DOI: 10.1007/s11431-017-9137-4

Mackie, R. I., & Cann, I. (2018). Let them eat fruit. Nature Microbiology, 3(2), 127-129. DOI: 10.1038/s41564-018-0108-8

Mulder, N., Schwartz, R., Brazas, M. D., Brooksbank, C., Gaeta, B., Morgan, S. L., ... Welch, L. (2018). The development and application of bioinformatics core competencies to improve bioinformatics training and education. PLoS Computational Biology, 14(2), [e1005772]. DOI: 10.1371/journal.pcbi.1005772

Bayzid, M. S., & Warnow, T. (2018). Gene tree parsimony for incomplete gene trees: Addressing true biological loss. Algorithms for Molecular Biology, 13(1), [1]. DOI: 10.1186/s13015-017-0120-1

Seo, S. O., Lu, T., Jin, Y. S., & Blaschek, H. P. (2018). Development of an oxygen-independent flavin mononucleotide-based fluorescent reporter system in Clostridium beijerinckii and its potential applications. Journal of Biotechnology, 265, 119-126. DOI: 10.1016/j.jbiotec.2017.11.003

Eiserhardt, W. L., Antonelli, A., Bennett, D. J., Botigué, L. R., Burleigh, J. G., Dodsworth, S., ... Baker, W. J. (Accepted/In press). A roadmap for global synthesis of the plant tree of life. American journal of botany. DOI: 10.1002/ajb2.1041

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y. S., Blaschek, H. P., & Wang, Y. (2018). Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example. In Methods in Molecular Biology (pp. 297-325). (Methods in Molecular Biology; Vol. 1772). Humana Press Inc.. DOI: 10.1007/978-1-4939-7795-6_17

Naas, A. E., Solden, L. M., Norbeck, A. D., Brewer, H., Hagen, L. H., Heggenes, I. M., ... Pope, P. B. (2018). "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system. Microbiome, 6(1), [44]. DOI: 10.1186/s40168-018-0421-8

Vlčková, K., Shutt-Phillip, K., Heisterman, M., Pafčo, B., Petrželkov, K. J., Todd, A., ... Gomez, A. (2018). Impact of stress on the gut microbiome of free-ranging western lowland gorillas. Microbiology (United Kingdom), 164(1), 40-44. [000587]. DOI: 10.1099/mic.0.000587

Oh, S., Hammes, F., & Liu, W. T. (2018). Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant. Water Research, 128, 278-285. DOI: 10.1016/j.watres.2017.10.054

Zhang, C., & Whitaker, R. J. (2018). Microhomology-mediated high-throughput gene inactivation strategy for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Applied and Environmental Microbiology, 84(1), [e02167-17]. DOI: 10.1128/AEM.02167-17

Xue, C., & Goldenfeld, N. (2017). Coevolution Maintains Diversity in the Stochastic "kill the Winner" Model. Physical Review Letters, 119(26), [268101]. DOI: 10.1103/PhysRevLett.119.268101

Goldenfeld, N., Biancalani, T., & Jafarpour, F. (2017). Universal biology and the statistical mechanics of early life. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 375(2109), [20160341]. DOI: 10.1098/rsta.2016.0341

Guo, X., Xie, X., Ren, J., Laktionova, M., Tabachnikova, E., Yu, L., ... Liaw, P. K. (2017). Plastic dynamics of the Al0.5CoCrCuFeNi high entropy alloy at cryogenic temperatures: Jerky flow, stair-like fluctuation, scaling behavior, and non-chaotic state. Applied Physics Letters, 111(25), [251905]. DOI: 10.1063/1.5004241

Verdorfer, T., Bernardi, R. C., Meinhold, A., Ott, W., Luthey-Schulten, Z., Nash, M. A., & Gaub, H. E. (2017). Combining in Vitro and in Silico Single-Molecule Force Spectroscopy to Characterize and Tune Cellulosomal Scaffoldin Mechanics. Journal of the American Chemical Society, 139(49), 17841-17852. DOI: 10.1021/jacs.7b07574

O’Dwyer, J. P., & Kandler, A. (2017). Inferring processes of cultural transmission: The critical role of rare variants in distinguishing neutrality from novelty biases. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1735), [20160426]. DOI: 10.1098/rstb.2016.0426

Liao, C., Blanchard, A. E., & Lu, T. (2017). An integrative circuit-host modelling framework for predicting synthetic gene network behaviours /631/553/552 /631/553/2695 article. Nature Microbiology, 2(12), 1658-1666. DOI: 10.1038/s41564-017-0022-5

Wang, W. Y., Shang, S. L., Wang, Y., Han, F., Darling, K. A., Wu, Y., ... Liu, Z. K. (2017). Atomic and electronic basis for the serrations of refractory high-entropy alloys. npj Computational Materials, 3(1), [24]. DOI: 10.1038/s41524-017-0024-0

Hawley, A. K., Nobu, M. K., Wright, J. J., Durno, W. E., Morgan-Lang, C., Sage, B., ... Hallam, S. J. (2017). Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients. Nature Communications, 8(1), [1507]. DOI: 10.1038/s41467-017-01376-9

Abeysirigunawardena, S. C., Kim, H., Lai, J., Ragunathan, K., Rappé, M. C., Luthey-Schulten, Z., ... Woodson, S. A. (2017). Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nature Communications, 8(1), [492]. DOI: 10.1038/s41467-017-00536-1

Motta, D., Keenan-Jones, D., Garcia, M. H., & Fouke, B. W. (2017). Hydraulic Evaluation of the Design and Operation of Ancient Rome's Anio Novus Aqueduct. Archaeometry, 59(6), 1150-1174. DOI: 10.1111/arcm.12303

Lai, J., Ghaemi, Z., & Luthey-Schulten, Z. (2017). The Conformational Change in Elongation Factor Tu Involves Separation of Its Domains. Biochemistry, 56(45), 5972-5979. DOI: 10.1021/acs.biochem.7b00591

Goldenfeld, N. (2017). A statistical mechanical phase transition to turbulence in a model shear flow. Journal of Fluid Mechanics, 830, 1-4. DOI: 10.1017/jfm.2017.597

Seo, S. O., Janssen, H., Magis, A., Wang, Y., Lu, T., Price, N. D., ... Blaschek, H. P. (2017). Genomic, Transcriptional, and Phenotypic Analysis of the Glucose Derepressed Clostridium beijerinckii Mutant Exhibiting Acid Crash Phenotype. Biotechnology Journal, 12(11), [1700182]. DOI: 10.1002/biot.201700182

Boyd, B. M., Allen, J. M., Nguyen, N. P., Sweet, A. D., Warnow, T., Shapiro, M. D., ... Johnson, K. P. (2017). Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola). Systematic Biology, 66(6), 896-911. DOI: 10.1093/sysbio/syx027

Nobu, M. K., Narihiro, T., Liu, M., Kuroda, K., Mei, R., & Liu, W. T. (2017). Thermodynamically diverse syntrophic aromatic compound catabolism. Environmental Microbiology, 19(11), 4576-4586. DOI: 10.1111/1462-2920.13922

Zhang, Y., Kitajima, M., Whittle, A. J., & Liu, W. T. (2017). Benefits of genomic insights and CRISPR-Cas signatures to monitor potential pathogens across drinking water production and distribution systems. Frontiers in Microbiology, 8(OCT). DOI: 10.3389/fmicb.2017.02036

Coleman, J. P., Meng, F., Tsuchiya, K., Beadsworth, J., LeBlanc, M., Liaw, P. K., ... Dahmen, K. A. (2017). Effect of annealing on nanoindentation slips in a bulk metallic glass. Physical Review B, 96(13), [134117]. DOI: 10.1103/PhysRevB.96.134117

D’Andrea, R., & O’Dwyer, J. P. (2017). Can editors save peer review from peer reviewers? PloS one, 12(10), [e0186111]. DOI: 10.1371/journal.pone.0186111

Diao, H. Y., Feng, R., Dahmen, K. A., & Liaw, P. K. (2017). Fundamental deformation behavior in high-entropy alloys: An overview. Current Opinion in Solid State and Materials Science, 21(5), 252-266. DOI: 10.1016/j.cossms.2017.08.003

Oh, S., Yap, G. C., Hong, P. Y., Huang, C. H., Aw, M. M., Shek, L. P. C., ... Lee, B. W. (2017). Immune-modulatory genomic properties differentiate gut microbiota of infants with and without eczema. PLoS ONE, 12(10), [e0184955]. DOI: 10.1371/journal.pone.0184955

Zhang, Y., Liu, J. P., Chen, S. Y., Xie, X., Liaw, P. K., Dahmen, K. A., ... Wang, Y. L. (2017). Serration and noise behaviors in materials. Progress in Materials Science, 90, 358-460. DOI: 10.1016/j.pmatsci.2017.06.004

Ghaemi, Z., Guzman, I., Gnutt, D., Luthey-Schulten, Z., & Gruebele, M. (2017). Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape. Journal of Physical Chemistry B, 121(36), 8437-8446. DOI: 10.1021/acs.jpcb.7b04318

Wefers, D., Dong, J., Abdel-Hamid, A. M., Paul, H. M., Pereira, G. V., Han, Y., ... Cann, I. (2017). Enzymatic mechanism for arabinan degradation and transport in the thermophilic bacterium caldanaerobius polysaccharolyticus. Applied and Environmental Microbiology, 83(18), [e00794]. DOI: 10.1128/AEM.00794-17

Allen, J. M., Boyd, B., Nguyen, N. P., Vachaspati, P., Warnow, T., Huang, D. I., ... Johnson, K. P. (2017). Phylogenomics from whole genome sequences using aTRAM. Systematic Biology, 66(5), 786-798. DOI: 10.1093/sysbio/syw105

Labhsetwar, P., Melo, M. C. R., Cole, J. A., & Luthey-Schulten, Z. (2017). Population FBA predicts metabolic phenotypes in yeast. PLoS Computational Biology, 13(9), [e1005728]. DOI: 10.1371/journal.pcbi.1005728

O'Dwyer, J. P. (2017). Ecology: Contests between species aid biodiversity. Nature, 548(7666), 166-167. DOI: 10.1038/nature23103

The Genome Standards Consortium (2017). Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature biotechnology, 35(8), 725-731. DOI: 10.1038/nbt.3893

Wefers, D., Cavalcante, J. J. V., Schendel, R. R., Deveryshetty, J., Wang, K., Wawrzak, Z., ... Cann, I. (2017). Biochemical and Structural Analyses of Two Cryptic Esterases in Bacteroides intestinalis and their Synergistic Activities with Cognate Xylanases. Journal of Molecular Biology, 429(16), 2509-2527. DOI: 10.1016/j.jmb.2017.06.017

Bayzid, M. S., & Warnow, T. (2017). Gene tree parsimony for incomplete gene trees. In 17th International Workshop on Algorithms in Bioinformatics, WABI 2017 (Vol. 88). [2] Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. DOI: 10.4230/LIPIcs.WABI.2017.2

Zhang, Y., Oh, S., & Liu, W. T. (2017). Impact of drinking water treatment and distribution on the microbiome continuum: an ecological disturbance's perspective. Environmental Microbiology, 19(8), 3163-3174. DOI: 10.1111/1462-2920.13800

Wagner, A., Whitaker, R. J., Krause, D. J., Heilers, J. H., Van Wolferen, M., Van Der Does, C., & Albers, S. V. (2017). Mechanisms of gene flow in archaea. Nature Reviews Microbiology, 15(8), 492-501. DOI: 10.1038/nrmicro.2017.41

Christensen, S., Molloy, E. K., Vachaspati, P., & Warnow, T. (2017). Optimal completion of incomplete gene trees in polynomial time using OCTAL. In 17th International Workshop on Algorithms in Bioinformatics, WABI 2017 (Vol. 88). [27] Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. DOI: 10.4230/LIPIcs.WABI.2017.27

Peterson, J. R., Cole, J. A., & Luthey-Schulten, Z. (2017). Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects. PLoS ONE, 12(8), [e0182570]. DOI: 10.1371/journal.pone.0182570

D’Andrea, R., & O’Dwyer, J. P. (2017). The impact of species-neutral stage structure on macroecological patterns. Theoretical Ecology, 1-10. DOI: 10.1007/s12080-017-0340-5

Sethna, J. P., Bierbaum, M. K., Dahmen, K. A., Goodrich, C. P., Greer, J. R., Hayden, L. X., ... Zapperi, S. (2017). Deformation of Crystals: Connections with Statistical Physics. Annual Review of Materials Research, 47, 217-246. DOI: 10.1146/annurev-matsci-070115-032036

Liao, J., Fang, C., Yu, J., Sathyagal, A., Willman, E., & Liu, W. T. (2017). Direct treatment of high-strength soft drink wastewater using a down-flow hanging sponge reactor: performance and microbial community dynamics. Applied Microbiology and Biotechnology, 101(14), 5925-5936. DOI: 10.1007/s00253-017-8326-1

Arntzen, M., Várnai, A., Mackie, R. I., Eijsink, V. G. H., & Pope, P. B. (2017). Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity. Environmental Microbiology, 19(7), 2701-2714. DOI: 10.1111/1462-2920.13770

Amato, K. R., Van Belle, S., Di Fiore, A., Estrada, A., Stumpf, R., White, B., ... Leigh, S. R. (2017). Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate. Microbial Ecology, 74(1), 250-258. DOI: 10.1007/s00248-017-0938-6

Boyd, B. M., Allen, J. M., Nguyen, N. P., Vachaspati, P., Quicksall, Z. S., Warnow, T., ... Reed, D. L. (2017). Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice. Molecular biology and evolution, 34(7), 1743-1757. DOI: 10.1093/molbev/msx117

O’Dwyer, J. P., Rominger, A., & Xiao, X. (2017). Reinterpreting maximum entropy in ecology: a null hypothesis constrained by ecological mechanism. Ecology Letters, 20(7), 832-841. DOI: 10.1111/ele.12788

Cole, J. A., & Luthey-Schulten, Z. (2017). Careful accounting of extrinsic noise in protein expression reveals correlations among its sources. Physical Review E, 95(6), [062418]. DOI: 10.1103/PhysRevE.95.062418

Campbell, K. M., Kouris, A., England, W., Anderson, R. E., McCleskey, R. B., Nordstrom, D. K., & Whitaker, R. J. (2017). Sulfolobus islandicus meta-populations in Yellowstone National Park hot springs. Environmental Microbiology, 19(6), 2334-2347. DOI: 10.1111/1462-2920.13728

Bautista, M. A., Black, J. A., Youngblut, N. D., & Whitaker, R. J. (2017). Differentiation and structure in Sulfolobus islandicus rod-shaped virus populations. Viruses, 9(5), [120]. DOI: 10.3390/v9050120

Botto, J., Fuchs, S. J., Fouke, B. W., Clarens, A. F., Freiburg, J. T., Berger, P. M., & Werth, C. J. (2017). Effects of Mineral Surface Properties on Supercritical CO2 Wettability in a Siliciclastic Reservoir. Energy and Fuels, 31(5), 5275-5285. DOI: 10.1021/acs.energyfuels.6b03336

Shi, Y., Yang, B., Xie, X., Brechtl, J., Dahmen, K. A., & Liaw, P. K. (2017). Corrosion of Al xCoCrFeNi high-entropy alloys: Al-content and potential scan-rate dependent pitting behavior. Corrosion Science, 119, 33-45. DOI: 10.1016/j.corsci.2017.02.019

Goldenfeld, N., & Shih, H. Y. (2017). Erratum to: Turbulence as a Problem in Non-equilibrium Statistical Mechanics (Journal of Statistical Physics, (2017), 167, 3-4, (575-594), 10.1007/s10955-016-1682-x). Journal of Statistical Physics, 167(3-4). DOI: 10.1007/s10955-016-1713-7

Goldenfeld, N., & Shih, H. Y. (2017). Turbulence as a Problem in Non-equilibrium Statistical Mechanics. Journal of Statistical Physics, 167(3-4), 575-594. DOI: 10.1007/s10955-016-1682-x

Englaender, J. A., Jones, J. A., Cress, B. F., Kuhlman, T. E., Linhardt, R. J., & Koffas, M. A. G. (2017). Effect of Genomic Integration Location on Heterologous Protein Expression and Metabolic Engineering in E. coli. ACS Synthetic Biology, 6(4), 710-720. DOI: 10.1021/acssynbio.6b00350

Earnest, T. M., Watanabe, R., Stone, J. E., Mahamid, J., Baumeister, W., Villa, E., & Luthey-Schulten, Z. (2017). Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations. Journal of Physical Chemistry B, 121(15), 3871-3881. DOI: 10.1021/acs.jpcb.7b00672

Gao, H., Liu, M., Griffin, J. S., Xu, L., Xiang, D., Scherson, Y. D., ... Wells, G. F. (2017). Complete Nutrient Removal Coupled to Nitrous Oxide Production as a Bioenergy Source by Denitrifying Polyphosphate-Accumulating Organisms. Environmental Science and Technology, 51(8), 4531-4540. DOI: 10.1021/acs.est.6b04896

Rushmore, J., Allison, A. B., Edwards, E. E., Bagal, U., Altizer, S., Cranfield, M. R., ... Yabsley, M. J. (2017). Erratum to: Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections ((2015), 10.1002/ajp.22442). American Journal of Primatology, 79(4), 1-2. DOI: 10.1002/ajp.22645

DeVille, L., & Galiardi, M. (2017). Finite-size effects and switching times for Moran process with mutation. Journal of Mathematical Biology, 74(5), 1197-1222. DOI: 10.1007/s00285-016-1056-7

Yu, L. P., Chen, S. Y., Ren, J. L., Ren, Y., Yang, F. Q., Dahmen, K. A., & Liaw, P. K. (2017). Plasticity performance of Al0.5CoCrCuFeNi high-entropy alloys under nanoindentation. Journal of Iron and Steel Research International, 24(4), 390-396. DOI: 10.1016/S1006-706X(17)30058-4

Li, J. J., Qiao, J. W., Dahmen, K. A., Yang, W. M., Shen, B. L., & Chen, M. W. (2017). Universality of slip avalanches in a ductile Fe-based bulk metallic glass. Journal of Iron and Steel Research International, 24(4), 366-371. DOI: 10.1016/S1006-706X(17)30054-7

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