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Lyu, M., Kong, L., Yang, Z., Wu, Y., Mcghee, C. E., & Lu, Y. (Accepted/In press). PNA-Assisted DNAzymes to Cleave Double-Stranded DNA for Genetic Engineering with High Sequence Fidelity. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.1c03129
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Lu, Q., Wei, Y., Lin, L., Liu, J., Duan, Y., Li, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H., Yuchi, Z., & Zhang, Y. (2021). The Glycyl Radical Enzyme Arylacetate Decarboxylase from Olsenella scatoligenes. ACS Catalysis, 11(9), 5789-5794. https://doi.org/10.1021/acscatal.1c01253
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Qian, H., Purwanto, N. S., Ivanoff, D. G., Halmes, A. J., Sottos, N. R., & Moore, J. S. (2021). Fast, reversible mechanochromism of regioisomeric oxazine mechanophores: Developing in situ responsive force probes for polymeric materials. Chem, 7(4), 1080-1091. https://doi.org/10.1016/j.chempr.2021.02.014
Wang, C., Rubakhin, S. S., Enright, M. J., Sweedler, J. V., & Nuzzo, R. G. (2021). 3D Particle-Free Printing of Biocompatible Conductive Hydrogel Platforms for Neuron Growth and Electrophysiological Recording. Advanced Functional Materials, 31(14), [2010246]. https://doi.org/10.1002/adfm.202010246
Ibarra-Sánchez, L. A., Kong, W., Lu, T., & Miller, M. J. (2021). Efficacy of nisin derivatives with improved biochemical characteristics, alone and in combination with endolysin PlyP100 to control Listeria monocytogenes in laboratory-scale Queso Fresco. Food Microbiology, 94, [103668]. https://doi.org/10.1016/j.fm.2020.103668
Jayakody, L. N., & Jin, Y. S. (2021). In-depth understanding of molecular mechanisms of aldehyde toxicity to engineer robust Saccharomyces cerevisiae. Applied Microbiology and Biotechnology, 105(7), 2675-2692. https://doi.org/10.1007/s00253-021-11213-1
Yun, E. J., Yu, S., Kim, Y. A., Liu, J. J., Kang, N. J., Jin, Y. S., & Kim, K. H. (2021). In Vitro Prebiotic and Anti-Colon Cancer Activities of Agar-Derived Sugars from Red Seaweeds. Marine Drugs, 19(4), [213]. https://doi.org/10.3390/md19040213, https://doi.org/10.3390/MD19040213
Sun, L., & Jin, Y-S. (2021). Xylose Assimilation for the Efficient Production of Biofuels and Chemicals by Engineered Saccharomyces cerevisiae. Biotechnology Journal, 16(4), [2000142]. https://doi.org/10.1002/biot.202000142
Southey, B. R., Zhang, P., Keever, M. R., Rymut, H. E., Johnson, R. W., Sweedler, J. V., & Rodriguez-Zas, S. L. (2021). Effects of maternal immune activation in porcine transcript isoforms of neuropeptide and receptor genes. Journal of Integrative Neuroscience, 20(1), 21-31. https://doi.org/10.31083/j.jin.2021.01.332
Shin, M., Park, H., Kim, S., Oh, E. J., Jeong, D., Florencia, C., Kim, K. H., Jin, Y. S., & Kim, S. R. (2021). Transcriptomic Changes Induced by Deletion of Transcriptional Regulator GCR2 on Pentose Sugar Metabolism in Saccharomyces cerevisiae. Frontiers in Bioengineering and Biotechnology, 9, [654177]. https://doi.org/10.3389/fbioe.2021.654177
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Zhang, M., Yang, C., Tasan, I., & Zhao, H. (2021). Expanding the Potential of Mammalian Genome Engineering via Targeted DNA Integration. ACS synthetic biology, 10(3), 429-446. https://doi.org/10.1021/acssynbio.0c00576
Cao, Y., Neu, J., Blanchard, A. E., Lu, T., & You, L. (2021). Repulsive expansion dynamics in colony growth and gene expression. PLoS computational biology, 17(3), [e1008168]. https://doi.org/10.1371/JOURNAL.PCBI.1008168
Lee, J., Schwarz, K. J., Yu, H., Krüger, A., Anslyn, E. V., Ellington, A. D., Moore, J. S., & Jewett, M. C. (2021). Ribosome-mediated incorporation of fluorescent amino acids into peptidesin vitro. Chemical Communications, 57(21), 2661-2664. https://doi.org/10.1039/d0cc07740b
Jia, J., Ellis, J. F., Cao, T., Fu, K., Morales-Soto, N., Shrout, J. D., Sweedler, J. V., & Bohn, P. W. (2021). Biopolymer Patterning-Directed Secretion in Mucoid and Nonmucoid Strains of Pseudomonas aeruginosa Revealed by Multimodal Chemical Imaging. ACS Infectious Diseases, 7(3), 598-607. https://doi.org/10.1021/acsinfecdis.0c00765
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Jarquin, D., de Leon, N., Romay, C., Bohn, M., Buckler, E. S., Ciampitti, I., Edwards, J., Ertl, D., Flint-Garcia, S., Gore, M. A., Graham, C., Hirsch, C. N., Holland, J. B., Hooker, D., Kaeppler, S. M., Knoll, J., Lee, E. C., Lawrence-Dill, C. J., Lynch, J. P., ... Lorenz, A. (2021). Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project. Frontiers in Genetics, 11, [592769]. https://doi.org/10.3389/fgene.2020.592769
Zhang, S., Luan, Y., Xiong, M., Zhang, J., Lake, R., & Lu, Y. (2021). DNAzyme Amplified Aptasensing Platform for Ochratoxin A Detection Using a Personal Glucose Meter. ACS Applied Materials and Interfaces, 13(8), 9472-9481. https://doi.org/10.1021/acsami.0c20417
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Armstrong, A. A., Pfeil, A., Alleyne, A. G., & Wagoner Johnson, A. J. (2021). Process monitoring and control strategies in extrusion-based bioprinting to fabricate spatially graded structures. Bioprinting, 21, [e00126]. https://doi.org/10.1016/j.bprint.2020.e00126
Horton, P., Long, S. P., Smith, P., Banwart, S. A., & Beerling, D. J. (2021). Technologies to deliver food and climate security through agriculture. Nature plants, 7(3), 250-255. https://doi.org/10.1038/s41477-021-00877-2
Acevedo-Siaca, L., Coe, R., Quick, W. P., & Long, S. P. (2021). Variation between rice accessions in photosynthetic induction in flag leaves and underlying mechanisms. Journal of experimental botany, 72(4), 1282-1294. https://doi.org/10.1093/jxb/eraa520
Reed, C. J., Lam, Q. N., Mirts, E. N., & Lu, Y. (2021). Molecular understanding of heteronuclear active sites in heme-copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling. Chemical Society Reviews, 50(4), 2486-2539. https://doi.org/10.1039/d0cs01297a
You, J. S., Singh, N., Reyes-Ordonez, A., Khanna, N., Bao, Z., Zhao, H., & Chen, J. (2021). Erratum: ARHGEF3 regulates skeletal muscle regeneration and strength through autophagy (Cell Reports (2021) 34(1), (S2211124720315837), (10.1016/j.celrep.2020.108594)). Cell Reports, 34(6), [108731]. https://doi.org/10.1016/j.celrep.2021.108731
Zhao, H., & Gunnoe, T. B. (2021). Thomas Ward Selected to Receive the 2021 ACS Catalysis Lectureship. ACS Catalysis, 11(3), 1816-1817. https://doi.org/10.1021/acscatal.1c00281
Petrik, I. D., Davydov, R., Kahle, M., Sandoval, B., Dwaraknath, S., Adelroth, P., Hoffman, B., & Lu, Y. (2021). An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network. Biochemistry, 60(4), 346-355. https://doi.org/10.1021/acs.biochem.0c00852
Pignon, C. P., Leakey, A. D. B., Long, S. P., & Kromdijk, J. (2021). Drivers of Natural Variation in Water-Use Efficiency Under Fluctuating Light Are Promising Targets for Improvement in Sorghum. Frontiers in Plant Science, 12, [627432]. https://doi.org/10.3389/fpls.2021.627432
Boob, A., & Zhao, H. (2021). Can Deep Learning Solve the Cas9 Dilemma? CRISPR Journal, 4(1), 13-15. https://doi.org/10.1089/crispr.2020.29117.hzh
Zhao, H., & Yoshikuni, Y. (2021). Editorial overview: Energy biotechnology. Current Opinion in Biotechnology, 67, iii-v. https://doi.org/10.1016/j.copbio.2021.01.018
Lee, J. W., Yook, S., Koh, H., Rao, C. V., & Jin, Y. S. (2021). Engineering xylose metabolism in yeasts to produce biofuels and chemicals. Current Opinion in Biotechnology, 67, 15-25. https://doi.org/10.1016/j.copbio.2020.10.012
Wang, J. X., Birbarah, P., Docimo, D., Yang, T., Alleyne, A. G., & Miljkovic, N. (2021). Nanostructured jumping-droplet thermal rectifier. Physical Review E, 103(2), [023110]. https://doi.org/10.1103/PhysRevE.103.023110
Kubo, N., Ishii, H., Xiong, X., Bianco, S., Meitinger, F., Hu, R., Hocker, J. D., Conte, M., Gorkin, D., Yu, M., Li, B., Dixon, J. R., Hu, M., Nicodemi, M., Zhao, H., & Ren, B. (2021). Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation. Nature Structural and Molecular Biology, 28(2), 152-161. https://doi.org/10.1038/s41594-020-00539-5
Rogers, A. R., Dunne, J. C., Romay, C., Bohn, M., Buckler, E. S., Ciampitti, I. A., Edwards, J., Ertl, D., Flint-Garcia, S., Gore, M. A., Graham, C., Hirsch, C. N., Hood, E., Hooker, D. C., Knoll, J., Lee, E. C., Lorenz, A., Lynch, J. P., McKay, J., ... Holland, J. B. (2021). The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment. G3: Genes, Genomes, Genetics, 11(2), [jkaa050]. https://doi.org/10.1093/g3journal/jkaa050
Fujii, N., Homma, H., Usiello, A., Sweedler, J., & Hamase, K. (2021). The significance of D-amino acids in the homochiral world of life. Biochimica et Biophysica Acta - Proteins and Proteomics, 1869(2), [140565]. https://doi.org/10.1016/j.bbapap.2020.140565
Haynes, C. L., & Sweedler, J. V. (2021). Introducing Analytical Chemistry's diversity and inclusion cover art series. Analytical Chemistry, 93(3), 1211-1212. https://doi.org/10.1021/acs.analchem.0c05466
Li, Y., Bhagwat, S. S., Cortés-Penã, Y. R., Ki, D., Rao, C. V., Jin, Y. S., & Guest, J. S. (2021). Sustainable Lactic Acid Production from Lignocellulosic Biomass. ACS Sustainable Chemistry and Engineering, 9(3), 1341-1351. https://doi.org/10.1021/acssuschemeng.0c08055
You, J-S., Singh, N., Reyes-Ordonez, A., Khanna, N., Bao, Z., Zhao, H., & Chen, J. (2021). ARHGEF3 Regulates Skeletal Muscle Regeneration and Strength through Autophagy. Cell Reports, 34(1), 108594. [108594]. https://doi.org/10.1016/j.celrep.2020.108594
Ainsworth, E. A., & Long, S. P. (2021). 30 years of free-air carbon dioxide enrichment (FACE): What have we learned about future crop productivity and its potential for adaptation? Global change biology, 27(1), 27-49. https://doi.org/10.1111/gcb.15375
Mast, D. H., Checco, J. W., & Sweedler, J. V. (2021). Advancing D-amino acid-containing peptide discovery in the metazoan. Biochimica et Biophysica Acta - Proteins and Proteomics, 1869(1), [140553]. https://doi.org/10.1016/j.bbapap.2020.140553
Kim, S. Y., Slattery, R. A., & Ort, D. R. (2021). A role for differential Rubisco activase isoform expression in C4 bioenergy grasses at high temperature. GCB Bioenergy, 13(1), 211-223. https://doi.org/10.1111/gcbb.12768
Liu, X., Machado, R. A., & Milenkovic, O. (2021). Directed Intersection Representations and the Information Content of Digraphs. IEEE Transactions on Information Theory, 67(1), 347-357. [9236641]. https://doi.org/10.1109/TIT.2020.3033168
Kuanyshev, N., Rao, C. V., Dien, B., & Jin, Y. S. (2021). Domesticating a food spoilage yeast into an organic acid‐tolerant metabolic engineering host: Lactic acid production by engineered Zygosaccharomyces bailii. Biotechnology and bioengineering, 118(1), 372-382. https://doi.org/10.1002/bit.27576
Dong, H., Clark, L. V., Jin, X., Anzoua, K., Bagmet, L., Chebukin, P., Dzyubenko, E., Dzyubenko, N., Ghimire, B. K., Heo, K., Johnson, D. A., Nagano, H., Sabitov, A., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P., & Sacks, E. J. (2021). Managing flowering time in Miscanthus and sugarcane to facilitate intra- And intergeneric crosses. PloS one, 16(1 January), [e0240390]. https://doi.org/10.1371/journal.pone.0240390
Shi, S., Sun, Y., Zavala, J., Moore, J., & Girju, R. (2021). Modeling Clinical Empathy in Narrative Essays. In Proceedings - 2021 IEEE 15th International Conference on Semantic Computing, ICSC 2021 (pp. 215-220). [9364558] (Proceedings - 2021 IEEE 15th International Conference on Semantic Computing, ICSC 2021). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ICSC50631.2021.00046
Han, H. M., Kim, I. J., Yun, E. J., Lee, J. W., Cho, Y., Jin, Y. S., & Kim, K. H. (2021). Overproduction of Exopolysaccharide Colanic Acid by Escherichia coli by Strain Engineering and Media Optimization. Applied Biochemistry and Biotechnology, 193(1), 111-127. https://doi.org/10.1007/s12010-020-03409-4
Slattery, R. A., & Ort, D. R. (2021). Perspectives on improving light distribution and light use efficiency in crop canopies. Plant physiology, 185(1), 34-48. https://doi.org/10.1093/PLPHYS/KIAA006
Cuculis, L., Zhao, C., Abil, Z., Zhao, H., Shukla, D., & Schroeder, C. M. (2021). Divalent cations promote TALE DNA-binding specificity. Nucleic acids research, 48(3), 1406-1422. https://doi.org/10.1093/NAR/GKZ1174
Acevedo-Siaca, L. G., Dionora, J., Laza, R., Paul Quick, W., & Long, S. P. (Accepted/In press). Dynamics of photosynthetic induction and relaxation within the canopy of rice and two wild relatives. Food and Energy Security. https://doi.org/10.1002/fes3.286
Zhang, P., Southey, B. R., Sweedler, J. V., Pradhan, A., & Rodriguez-Zas, S. L. (2021). Enhanced understanding of molecular interactions and function underlying pain processes through networks of transcript isoforms, genes, and gene families. Advances and Applications in Bioinformatics and Chemistry, 14, 49-69. https://doi.org/10.2147/AABC.S284986
Dong, C., Schultz, J. C., Liu, W., Lian, J., Huang, L., Xu, Z., & Zhao, H. (Accepted/In press). Identification of novel metabolic engineering targets for S-adenosyl-L-methionine production in Saccharomyces cerevisiae via genome-scale engineering. Metabolic Engineering. https://doi.org/10.1016/j.ymben.2021.03.005
Vedant, Allison, J. T., & Ghosh, A. M. (2021). Reducing jitter during large slews using multifunctional structures for attitude control via torque analysis. In AIAA Scitech 2021 Forum (pp. 1-9). (AIAA Scitech 2021 Forum). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2021-1098
Dau, S. H., Dinh, T. X., Kiah, H. M., Luong, T. T., & Milenkovic, O. (Accepted/In press). Repairing Reed-Solomon Codes via Subspace Polynomials. IEEE Transactions on Information Theory. https://doi.org/10.1109/TIT.2021.3071878
Neary, W. J., Sun, Y., & Moore, J. S. (Accepted/In press). Selective Ring-Opening Allene Metathesis: Polymerization or Ruthenium Vinylidene Formation. ACS Macro Letters, 642-648. https://doi.org/10.1021/acsmacrolett.1c00229
Sweedler, J. V. (Accepted/In press). The Inaugural Measurement Science Symposium: Do Not Miss It! Analytical Chemistry. https://doi.org/10.1021/acs.analchem.1c01894
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Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Liu, B., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities-April 2020. Environmental Science and Technology Letters, 7(5), 280-281. https://doi.org/10.1021/acs.estlett.0c00316
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities-April 2020. Journal of Chemical Education, 97(5), 1217-1218. https://doi.org/10.1021/acs.jchemed.0c00370
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Liu, B., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities-April 2020. ACS Biomaterials Science and Engineering, 6(5), 2707-2708. https://doi.org/10.1021/acsbiomaterials.0c00580
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities-April 2020. ACS Combinatorial Science, 22(5), 223-224. https://doi.org/10.1021/acscombsci.0c00061
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Journal of Physical Chemistry C, 124(18), 9629-9630. https://doi.org/10.1021/acs.jpcc.0c03496
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Journal of Physical Chemistry A, 124(18), 3501-3502. https://doi.org/10.1021/acs.jpca.0c03467
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Journal of Physical Chemistry B, 124(18), 3603-3604. https://doi.org/10.1021/acs.jpcb.0c03495
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Chemical Neuroscience, 11(9), 1196-1197. https://doi.org/10.1021/acschemneuro.0c00228
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Journal of Agricultural and Food Chemistry, 68(18), 5019-5020. https://doi.org/10.1021/acs.jafc.0c02498
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Applied Materials and Interfaces, 12(18), 20147-20148. https://doi.org/10.1021/acsami.0c07158
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Journal of the American Chemical Society, 142(18), 8059-8060. https://doi.org/10.1021/jacs.0c04253
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Industrial and Engineering Chemistry Research, 59(18), 8509-8510. https://doi.org/10.1021/acs.iecr.0c01968
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Crystal Growth and Design, 20(5), 2817-2818. https://doi.org/10.1021/acs.cgd.0c00543
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities-April 2020. Journal of the American Society for Mass Spectrometry, 31(5), 1006-1007. https://doi.org/10.1021/jasms.0c00135
Wu, Q., Rubakhin, S. S., & Sweedler, J. V. (2020). Quantitative Imprint Mass Spectrometry Imaging of Endogenous Ceramides in Rat Brain Tissue with Kinetic Calibration. Analytical chemistry, 92(9), 6613-6621. https://doi.org/10.1021/acs.analchem.0c00392
Sweedler, J. V., Pemberton, J., & Zhang, X. (2020). The Addition of Executive Editors: A Change for the Better! Analytical Chemistry, 92(9), 6185-6186. https://doi.org/10.1021/acs.analchem.0c01566
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Omega, 5(17), 9624-9625. https://doi.org/10.1021/acsomega.0c01788
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Langmuir, 36(17), 4565-4566. https://doi.org/10.1021/acs.langmuir.0c01135
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Analytical Chemistry, 92(9), 6187-6188. https://doi.org/10.1021/acs.analchem.0c01669
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Biochemistry, 59(17), 1641-1642. https://doi.org/10.1021/acs.biochem.0c00318
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Environmental Science and Technology, 54(9), 5307-5308. https://doi.org/10.1021/acs.est.0c02442
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Sustainable Chemistry and Engineering, 8(17), 6574-6575. https://doi.org/10.1021/acssuschemeng.0c02908
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Materials Letters, 2(5), 563-564. https://doi.org/10.1021/acsmaterialslett.0c00159
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Liu, B. L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Inorganic Chemistry, 59(9), 5796-5797. https://doi.org/10.1021/acs.inorgchem.0c01141
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Molecular pharmaceutics, 17(5), 1445-1446. https://doi.org/10.1021/acs.molpharmaceut.0c00420
Ye, S., Enghiad, B., Zhao, H., & Takano, E. (2020). Fine-tuning the regulation of Cas9 expression levels for efficient CRISPR-Cas9 mediated recombination in Streptomyces. Journal of Industrial Microbiology and Biotechnology, 47(4-5), 413-423. https://doi.org/10.1007/s10295-020-02277-5
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (2020). Update to Our Reader, Reviewer, and Author Communities - April 2020. Organic Letters, 22(9), 3307-3308. https://doi.org/10.1021/acs.orglett.0c01355
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Cao, M., Fatma, Z., Song, X., Hsieh, P. H., Tran, V. G., Lyon, W. L., Sayadi, M., Shao, Z., Yoshikuni, Y., & Zhao, H. (2020). A genetic toolbox for metabolic engineering of Issatchenkia orientalis. Metabolic Engineering, 59, 87-97. https://doi.org/10.1016/j.ymben.2020.01.005
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Sun, H., Zhao, H., & Ang, E. L. (2020). A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator. ACS synthetic biology, 9(4), 698-705. https://doi.org/10.1021/acssynbio.9b00443
Li, Z., Robertson, L. A., Shkrob, I. A., Smith, K. C., Cheng, L., Zhang, L., Moore, J. S., & Z, Y. (2020). Realistic Ion Dynamics through Charge Renormalization in Nonaqueous Electrolytes. Journal of Physical Chemistry B, 124(15), 3214-3220. https://doi.org/10.1021/acs.jpcb.0c01197
Wang, B., Guo, F., Huang, C., & Zhao, H. (2020). Unraveling the iterative type I polyketide synthases hidden in Streptomyces. Proceedings of the National Academy of Sciences of the United States of America, 117(15), 8449-8454. https://doi.org/10.1073/pnas.1917664117
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Wei, Y., Tan, Y. L., Ang, E. L., & Zhao, H. (2020). Identification and Characterization of Citrus Peel Uronic Acid Oxidase. ChemBioChem, 21(6), 797-800. https://doi.org/10.1002/cbic.201900546
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Zhang, J. J., Lan, T., & Lu, Y. (2020). Translating in vitro diagnostics from centralized laboratories to point-of-care locations using commercially-available handheld meters. TrAC - Trends in Analytical Chemistry, 124, [115782]. https://doi.org/10.1016/j.trac.2019.115782
Wang, B., & Zhao, H. (2020). Unleashing the power of energy storage: Engineering β-oxidation pathways for polyketide production. Synthetic and Systems Biotechnology, 5(1), 21-22. https://doi.org/10.1016/j.synbio.2020.01.002
Smith, J. W., Jiang, X., An, H., Barclay, A. M., Licari, G., Tajkhorshid, E., Moore, E. G., Rienstra, C. M., Moore, J. S., & Chen, Q. (2020). Polymer-Peptide Conjugates Convert Amyloid into Protein Nanobundles through Fragmentation and Lateral Association. ACS Applied Nano Materials, 3(2), 937-945. https://doi.org/10.1021/acsanm.9b01331
Bhavya, Boughoula, A., Green, A., & Zhai, C. X. (2020). Collective development of large scale data science products via modularized assignments: An experience report. In SIGCSE 2020 - Proceedings of the 51st ACM Technical Symposium on Computer Science Education (pp. 1200-1206). (Annual Conference on Innovation and Technology in Computer Science Education, ITiCSE). Association for Computing Machinery. https://doi.org/10.1145/3328778.3366961
Feinberg, A. M., Davydovich, O., Lloyd, E. M., Ivanoff, D. G., Shiang, B., Sottos, N. R., & Moore, J. S. (2020). Triggered Transience of Plastic Materials by a Single Electron Transfer Mechanism. ACS Central Science, 6(2), 266-273. https://doi.org/10.1021/acscentsci.9b01237
Cuculis, L., Zhao, C., Abil, Z., Zhao, H., Shukla, D., & Schroeder, C. M. (2020). Divalent cations promote TALE DNA-binding specificity. Nucleic acids research, 48(3), 1406-1422. https://doi.org/10.1093/nar/gkz1174
Zhang, Y., Sondhi, P., Goswami, A., & Zhai, C. X. (2020). Towards a soft faceted browsing scheme for information access. Unknown Journal.
Bai, Y., Xing, H., Bai, Y., Tan, L. H., Hwang, K., Li, J., Lu, Y., & Zimmerman, S. C. (2020). Independent control over size, valence, and elemental composition in the synthesis of DNA-nanoparticle conjugates. Chemical Science, 11(6), 1564-1572. https://doi.org/10.1039/c9sc05656d
McFarland, B. A., Alkhalifah, N., Bohn, M., Bubert, J., Buckler, E. S., Ciampitti, I., Edwards, J., Ertl, D., Gage, J. L., Falcon, C. M., Flint-Garcia, S., Gore, M. A., Graham, C., Hirsch, C. N., Holland, J. B., Hood, E., Hooker, D., Jarquin, D., Kaeppler, S. M., ... De Leon, N. (2020). Maize genomes to fields (G2F): 2014-2017 field seasons: Genotype, phenotype, climatic, soil, and inbred ear image datasets. BMC Research Notes, 13(1), [71]. https://doi.org/10.1186/s13104-020-4922-8
Khajouei, F., Samper, N., Djabrayan, N. J., Lunt, B., Jiménez, G., & Sinha, S. (2020). Model-based analysis of polymorphisms in an enhancer reveals cis-regulatory mechanisms. Unknown Journal. https://doi.org/10.1101/2020.02.07.939264
Huang, S., Blatti, C., Sinha, S., & Parameswaran, A. G. (2020). GENVISAGE: Rapid identification of discriminative and explainable feature pairs for genomic analysis. Unknown Journal. https://doi.org/10.1101/2020.02.05.935411
Sweedler, J. V. (2020). Strange Advice for Authors: Submit Your Manuscript with a Short Title on a Weekday. Analytical Chemistry, 92(3), 2351-2352. https://doi.org/10.1021/acs.analchem.0c00223
Lohan, D. J., Dede, E. M., & Allison, J. T. (2020). A study on practical objectives and constraints for heat conduction topology optimization. Structural and Multidisciplinary Optimization, 61(2), 475-489. https://doi.org/10.1007/s00158-019-02369-6
Oh, E. J., & Jin, Y. S. (2020). Engineering of Saccharomyces cerevisiae for efficient fermentation of cellulose. FEMS yeast research, 20(1), [foz089]. https://doi.org/10.1093/femsyr/foz089
Wang, Y., Burgess, S. J., de Becker, E. M., & Long, S. P. (2020). Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity? The Plant Journal, 101(4), 874-884. https://doi.org/10.1111/tpj.14663
Kwak, S., Yun, E. J., Lane, S., Oh, E. J., Kim, K. H., & Jin, Y. S. (2020). Redirection of the Glycolytic Flux Enhances Isoprenoid Production in Saccharomyces cerevisiae. Biotechnology Journal, 15(2), [1900173]. https://doi.org/10.1002/biot.201900173
Tohidifar, P., Plutz, M. J., Ordal, G. W., & Rao, C. V. (2020). The mechanism of bidirectional pH taxis in Bacillus subtilis. Journal of bacteriology, 202(4), [e00491-19]. https://doi.org/10.1128/JB.00491-19
Lane, S., Zhang, Y., Yun, E. J., Ziolkowski, L., Zhang, G., Jin, Y. S., & Avalos, J. L. (2020). Xylose assimilation enhances the production of isobutanol in engineered Saccharomyces cerevisiae. Biotechnology and bioengineering, 117(2), 372-381. https://doi.org/10.1002/bit.27202
Xiong, M., Yang, Z., Lake, R. J., Li, J., Hong, S., Fan, H., Zhang, X. B., & Lu, Y. (2020). DNAzyme-Mediated Genetically Encoded Sensors for Ratiometric Imaging of Metal Ions in Living Cells. Angewandte Chemie - International Edition, 59(5), 1891-1896. https://doi.org/10.1002/anie.201912514
Ren, H., Shi, C., & Zhao, H. (2020). Computational Tools for Discovering and Engineering Natural Product Biosynthetic Pathways. iScience, 23(1), [100795]. https://doi.org/10.1016/j.isci.2019.100795
Ouyang, C., Zhang, S., Xue, C., Yu, X., Xu, H., Wang, Z., Lu, Y., & Wu, Z. S. (2020). Precision-Guided Missile-Like DNA Nanostructure Containing Warhead and Guidance Control for Aptamer-Based Targeted Drug Delivery into Cancer Cells in Vitro and in Vivo. Journal of the American Chemical Society, 142(3), 1265-1277. https://doi.org/10.1021/jacs.9b09782
Rahimi, N., Carmon, S., Averbukh, I., Khajouei, F., Sinha, S., Schejter, E. D., Barkai, N., & Shilo, B. Z. (2020). Global shape of Toll activation is determined by wntD enhancer properties. Proceedings of the National Academy of Sciences of the United States of America, 117(3), 1552-1558. https://doi.org/10.1073/pnas.1918268117
Mast, D. H., Checco, J. W., & Sweedler, J. V. (2020). Differential post-translational amino acid isomerization found among neuropeptides in aplysia californica. ACS chemical biology, 15(1), 272-281. https://doi.org/10.1021/acschembio.9b00910
Luo, Y., Vo, L., Ding, H., Su, Y., Liu, Y., Qian, W. W., Zhao, H., & Peng, J. (2020). Evolutionary context-integrated deep sequence modeling for protein engineering. Unknown Journal. https://doi.org/10.1101/2020.01.16.908509
Gabrys, R., Pattabiraman, S., & Milenkovic, O. (2020). Mass Error-Correction Codes for Polymer-Based Data Storage. Unknown Journal.
Agarwal, A., Milenkovic, O., Pattabiraman, S., & Ribeiro, J. (2020). Group testing with runlength constraints for topological molecular storage. Unknown Journal.
Gossage, Z. T., Guo, F., Hatfield, K. O., Martin, T. A., Tian, Q., Gao, E. J., Kumar, A., Rodríguez-López, J., & Zhao, H. (2020). Reconstruction of Lead Acid Battery Negative Electrodes after Hard Sulfation Using Controlled Chelation Chemistry. Journal of the Electrochemical Society, 167(12), [120537]. https://doi.org/10.1149/1945-7111/abb349
Xiong, Y., Zhang, J., Yang, Z., Mou, Q., Ma, Y., Xiong, Y., & Lu, Y. (2020). Functional DNA Regulated CRISPR-Cas12a Sensors for Point-of-Care Diagnostics of Non-Nucleic-Acid Targets. Journal of the American Chemical Society, 142(1), 207-213. https://doi.org/10.1021/jacs.9b09211
Cencer, M. M., Greenlee, A. J., & Moore, J. S. (2020). Quantifying Error Correction through a Rule-Based Model of Strand Escape from an [ n]-Rung Ladder. Journal of the American Chemical Society, 142(1), 162-168. https://doi.org/10.1021/jacs.9b08958
Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Ching, K. C., Tsai, D. J., Jhang, Y. W., Lauderdale, T. L., Shia, K. S., Zhao, H., Ang, E. L., Zhang, M. M., Lim, Y. H., & Wong, F. T. (2020). Biosynthetic engineering of the antifungal, anti-MRSA auroramycin. Microbial cell factories, 19(1), [3]. https://doi.org/10.1186/s12934-019-1274-y
Kim, J., Venkata, N. C., Gonzalez, G. A. H., Khanna, N., & Belmont, A. S. (2020). Gene expression amplification by nuclear speckle association. Journal of Cell Biology, 219(1). https://doi.org/10.1083/jcb.201904046
Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H., & Rao, C. V. (2020). Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10. Applied Microbiology and Biotechnology, 104(1), 161-171. https://doi.org/10.1007/s00253-019-10243-0
Armstrong, A. A., Norato, J., Alleyne, A. G., & Wagoner Johnson, A. J. (2020). Direct process feedback in extrusion-based 3D bioprinting. Biofabrication, 12(1), [015017]. https://doi.org/10.1088/1758-5090/ab4d97
Zhou, J., Lian, J., & Rao, C. V. (Accepted/In press). Metabolic engineering of Parageobacillus thermoglucosidasius for the efficient production of (2R, 3R)-butanediol. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-020-10553-8
Kromdijk, J., Głowacka, K., & Long, S. P. (2020). Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines. Journal of experimental botany, 71(1), 318-329. https://doi.org/10.1093/jxb/erz442
Addy, P. S., Shivrayan, M., Cencer, M., Zhuang, J., Moore, J. S., & Thayumanavan, S. (Accepted/In press). Polymer with Competing Depolymerization Pathways: Chain Unzipping versus Chain Scission. ACS Macro Letters, 855-859. https://doi.org/10.1021/acsmacrolett.0c00250
Lim, C. K. W., Gapinske, M., Brooks, A. K., Woods, W. S., Powell, J. E., Zeballos C., M. A., Winter, J., Perez-Pinera, P., & Gaj, T. (Accepted/In press). Treatment of a Mouse Model of ALS by In Vivo Base Editing. Molecular Therapy, 28(4), 1177-1189. https://doi.org/10.1016/j.ymthe.2020.01.005
Long, S. P. (2020). Twenty-five years of GCB: Putting the biology into global change. Global change biology, 26(1), 1-2. https://doi.org/10.1111/gcb.14921
Hong, S., Zhang, X., Lake, R. J., Pawel, G. T., Guo, Z., Pei, R., & Lu, Y. (2020). A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells. Chemical Science, 11(3), 713-720. https://doi.org/10.1039/c9sc04773e
Herber, D. R., Allison, J. T., Buettner, R., Abolmoali, P., & Patnaik, S. S. (2020). Architecture generation and performance evaluation of aircraft thermal management systems through graph-based techniques. In AIAA Scitech 2020 Forum (AIAA Scitech 2020 Forum; Vol. 1 PartF). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2020-0159
Southey, B. R., Rodriguez-Zas, S. L., Rhodes, J. S., & Sweedler, J. V. (2020). Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies. PloS one, 15(3), [e0228562]. https://doi.org/10.1371/journal.pone.0228562
Morales, A., Narang, K., Sundaram, H., & Zhai, C. (2020). CrowdQM: Learning Aspect-Level User Reliability and Comment Trustworthiness in Discussion Forums. In H. W. Lauw, E-P. Lim, R. C-W. Wong, A. Ntoulas, S-K. Ng, & S. J. Pan (Eds.), Advances in Knowledge Discovery and Data Mining - 24th Pacific-Asia Conference, PAKDD 2020, Proceedings (pp. 592-605). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12084 LNAI). Springer. https://doi.org/10.1007/978-3-030-47426-3_46
Luo, Y., Vo, L., Ding, H., Su, Y., Liu, Y., Qian, W. W., Zhao, H., & Peng, J. (2020). Evolutionary context-integrated deep sequence modeling for protein engineering. In R. Schwartz (Ed.), Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings (pp. 261-263). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12074 LNBI). Springer. https://doi.org/10.1007/978-3-030-45257-5_30
Seyler, D., Bruin, P., Bayyapu, P., & Zhai, C. X. (2020). Finding contextually consistent information units in legal text. CEUR Workshop Proceedings, 2645, 48-51.
Vedant, & Allison, J. T. (2020). Impact of including electronics design on design of intelligent structures: Applications to multifunctional structures for attitude control (MSAC). In ASME 2020 Conference on Smart Materials, Adaptive Structures and Intelligent Systems, SMASIS 2020 [V001T03A010] (ASME 2020 Conference on Smart Materials, Adaptive Structures and Intelligent Systems, SMASIS 2020). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/SMASIS20-2331
Blatti, C., Emad, A., Berry, M. J., Gatzke, L., Epstein, M., Lanier, D., Rizal, P., Ge, J., Liao, X., Sobh, O., Lambert, M., Post, C. S., Xiao, J., Groves, P., Epstein, A. T., Chen, X., Srinivasan, S., Lehnert, E., Kalari, K. R., ... Sinha, S. (2020). Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform. PLoS biology, 18(1), [e3000583]. https://doi.org/10.1371/journal.pbio.3000583
Jeong, D., Oh, E. J., Ko, J. K., Nam, J-O., Park, H-S., Jin, Y-S., Lee, E. J., & Kim, S. R. (2020). Metabolic engineering considerations for the heterologous expression of xylose-catabolic pathways in Saccharomyces cerevisiae. PloS one, 15(7), e0236294. https://doi.org/10.1371/journal.pone.0236294
Robertson, L. A., Li, Z., Cao, Y., Shkrob, I. A., Tyagi, M., Smith, K. C., Zhang, L., Moore, J. S., & Zhyang, Y. (2020). Observation of Microheterogeneity in Highly Concentrated Nonaqueous Electrolyte Solutions. Journal of the American Chemical Society, 141(20), 8041-8046. https://doi.org/10.1021/jacs.9b02323
Xue, P., Si, T., & Zhao, H. (2020). Optically guided mass spectrometry to screen microbial colonies for directed enzyme evolution. In D. S. Tawfik (Ed.), Methods in Enzymology (pp. 255-273). (Methods in Enzymology; Vol. 644). Academic Press Inc.. https://doi.org/10.1016/bs.mie.2020.04.054
Han, H. M., Kim, I. J., Yun, E. J., Lee, J. W., Cho, Y., Jin, Y. S., & Kim, K. H. (Accepted/In press). Overproduction of Exopolysaccharide Colanic Acid by Escherichia coli by Strain Engineering and Media Optimization. Applied Biochemistry and Biotechnology. https://doi.org/10.1007/s12010-020-03409-4
Jagtap, S. S., Bedekar, A. A., & Rao, C. V. (2020). Quorum Sensing in Yeast. In S. S. Dhiman (Ed.), ACS Symposium Series (pp. 235-250). (ACS Symposium Series; Vol. 1374). American Chemical Society. https://doi.org/10.1021/bk-2020-1374.ch013
Dean, L. M., Wu, Q., Alshangiti, O., Moore, J. S., & Sottos, N. R. (Accepted/In press). Rapid Synthesis of Elastomers and Thermosets with Tunable Thermomechanical Properties. ACS Macro Letters, 819-824. https://doi.org/10.1021/acsmacrolett.0c00233
Cui, T., Allison, J., & Wang, P. (2020). Reliability-based co-design for state-constrained stochastic dynamical systems. In AIAA Scitech 2020 Forum (AIAA Scitech 2020 Forum; Vol. 1 PartF). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2020-0413
Gabrys, R., Dau, H. S., Colbourn, C. J., & Milenkovic, O. (2020). Set-codes with small intersections and small discrepancies. SIAM Journal on Discrete Mathematics, 34(2), 1148-1171. https://doi.org/10.1137/19M1241106
Zhao, S., Jiang, M., Qin, B., Liu, T., Zhai, C., & Wang, F. (Accepted/In press). Structural and Textual Information Fusion for Symptom and Disease Representation Learning. IEEE Transactions on Knowledge and Data Engineering. https://doi.org/10.1109/TKDE.2020.3039469
Sweedler, J. V. (Accepted/In press). The Analytical Chemistry Virtual Issue Featuring Our Advisory Boards. Analytical Chemistry. https://doi.org/10.1021/acs.analchem.0c04765
Huang, E. W., Bhope, A., Lim, J., Sinha, S., & Emad, A. (2020). Tissue-guided LASSO for prediction of clinical drug response using preclinical samples. PLoS computational biology, 16(1), [e1007607]. https://doi.org/10.1371/journal.pcbi.1007607
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (Accepted/In press). Update to Our Reader, Reviewer, and Author Communities - April 2020. Biomacromolecules. https://doi.org/10.1021/acs.biomac.0c00585
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (Accepted/In press). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Energy Letters, 1610-1611. https://doi.org/10.1021/acsenergylett.0c00847
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (Accepted/In press). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Infectious Diseases. https://doi.org/10.1021/acsinfecdis.0c00218
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (Accepted/In press). Update to Our Reader, Reviewer, and Author Communities - April 2020. Bioconjugate Chemistry. https://doi.org/10.1021/acs.bioconjchem.0c00236
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (Accepted/In press). Update to Our Reader, Reviewer, and Author Communities - April 2020. Journal of Physical Chemistry Letters, 3571-3572. https://doi.org/10.1021/acs.jpclett.0c01194
Burrows, C. J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Aldrich, C. C., Rowan, S., Bin Liu, L., ... Loo, J. A. (Accepted/In press). Update to Our Reader, Reviewer, and Author Communities - April 2020. ACS Medicinal Chemistry Letters. https://doi.org/10.1021/acsmedchemlett.0c00206
Sweedler, J. V. (Accepted/In press). Your Manuscript's Incredible Journey. Analytical chemistry. https://doi.org/10.1021/acs.analchem.0c03532
Zhang, S., Zhang, C., Chen, H., Kieffer, S. J., Neubrech, F., Giessen, H., ... Braun, P. V. (2019). Selective Autonomous Molecular Transport and Collection by Hydrogel-Embedded Supramolecular Chemical Gradients. Angewandte Chemie - International Edition, 58(50), 18165-18170. https://doi.org/10.1002/anie.201908647
Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., ... Freemont, P. S. (2019). Author Correction: Building a global alliance of biofoundries (Nature Communications, (2019), 10, 1, (2040), 10.1038/s41467-019-10079-2). Nature communications, 10(1), [3132]. https://doi.org/10.1038/s41467-019-10862-1
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Liu, K., Pan, C., Kuhn, A., Nievergelt, A. P., Fantner, G. E., Milenkovic, O., & Radenovic, A. (2019). Detecting topological variations of DNA at single-molecule level. Nature communications, 10(1), [3]. https://doi.org/10.1038/s41467-018-07924-1
Lee, J., Schwieter, K. E., Watkins, A. M., Kim, D. S., Yu, H., Schwarz, K. J., ... Jewett, M. C. (2019). Expanding the limits of the second genetic code with ribozymes. Nature communications, 10(1), [5097]. https://doi.org/10.1038/s41467-019-12916-w
Zhang, J., Fengler, K. A., Van Hemert, J. L., Gupta, R., Mongar, N., Sun, J., ... Shen, B. (2019). Identification and characterization of a novel stay-green QTL that increases yield in maize. Plant Biotechnology Journal, 17(12), 2272-2285. https://doi.org/10.1111/pbi.13139
Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A., & Rodriguez-Zas, S. L. (2019). Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens. Molecular Neurobiology, 56(12), 7929-7949. https://doi.org/10.1007/s12035-019-01650-5
Liu, J. J., Zhang, G. C., Kwak, S., Oh, E. J., Yun, E. J., Chomvong, K., ... Jin, Y-S. (2019). Overcoming the thermodynamic equilibrium of an isomerization reaction through oxidoreductive reactions for biotransformation. Nature communications, 10(1), [1356]. https://doi.org/10.1038/s41467-019-09288-6
Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., ... Pradhan, A. A. (2019). PACAP and Other Neuropeptide Targets Link Chronic Migraine and Opioid-induced Hyperalgesia in Mouse Models. Molecular & cellular proteomics : MCP, 18(12), 2447-2458. https://doi.org/10.1074/mcp.RA119.001767
Xing, M., Wei, Y., Zhou, Y., Zhang, J., Lin, L., Hu, Y., ... Zhang, Y. (2019). Radical-mediated C-S bond cleavage in C2 sulfonate degradation by anaerobic bacteria. Nature communications, 10(1), [1609]. https://doi.org/10.1038/s41467-019-09618-8
Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J., & Ort, D. R. (2019). Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]. Global change biology, 25(12), 4352-4368. https://doi.org/10.1111/gcb.14796
Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., ... Maranas, C. D. (2019). A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data. Metabolic Engineering Communications, 9, [e00101]. https://doi.org/10.1016/j.mec.2019.e00101
Zaouri, N., Cui, Z., Peinetti, A. S., Lu, Y., & Hong, P. Y. (2019). DNAzyme-based biosensor as a rapid and accurate verification tool to complement simultaneous enzyme-based media for: E. Coli detection. Environmental Science: Water Research and Technology, 5(12), 2260-2268. https://doi.org/10.1039/c9ew00795d
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Sweedler, J. V. (2019). Salami Publications and Duplicate Submissions: Put Them on Your List of Things to Avoid. Analytical chemistry, 91(5), 3177-3178. https://doi.org/10.1021/acs.analchem.9b00904
Kwak, S., Jo, J. H., Yun, E. J., Jin, Y-S., & Seo, J. H. (2019). Production of biofuels and chemicals from xylose using native and engineered yeast strains. Biotechnology Advances, 37(2), 271-283. https://doi.org/10.1016/j.biotechadv.2018.12.003
Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., ... Long, S. P. (2019). Reply to: Brazilian ethanol expansion subject to limitations. Nature Climate Change, 9(3), 211-212. https://doi.org/10.1038/s41558-019-0423-y
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Epstein, E. S., Martinetti, L., Kollarigowda, R. H., Carey-De La Torre, O., Moore, J. S., Ewoldt, R. H., & Braun, P. V. (2019). Modulating Noncovalent Cross-links with Molecular Switches. Journal of the American Chemical Society, 141(8), 3597-3604. https://doi.org/10.1021/jacs.8b12762
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Kosuge, T., Zhu, X., Lau, V. M., Aoki, D., Martinez, T. J., Moore, J. S., & Otsuka, H. (2019). Multicolor Mechanochromism of a Polymer/Silica Composite with Dual Distinct Mechanophores. Journal of the American Chemical Society, 141(5), 1898-1902. https://doi.org/10.1021/jacs.8b13310
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Lopez Hernandez, H., Takekuma, S. K., Mejia, E. B., Plantz, C. L., Sottos, N. R., Moore, J. S., & White, S. R. (2019). Processing-dependent mechanical properties of solvent cast cyclic polyphthalaldehyde. Polymer, 162, 29-34. https://doi.org/10.1016/j.polymer.2018.12.016
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Zhang, S., Jagtap, S. S., Deewan, A., & Rao, C. V. (2019). pH selectively regulates citric acid and lipid production in Yarrowia lipolytica W29 during nitrogen-limited growth on glucose. Journal of Biotechnology, 290, 10-15. https://doi.org/10.1016/j.jbiotec.2018.10.012
South, P. F., Cavanagh, A. P., Liu, H. W., & Ort, D. R. (2019). Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field. Science, 363(6422), [eaat9077]. https://doi.org/10.1126/science.aat9077
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Lourentzou, I., Manghnani, K., & Zhai, C. (2019). Adapting sequence to sequence models for text normalization in social media. 335-345. Paper presented at 13th International Conference on Web and Social Media, ICWSM 2019, Munich, Germany.
Geigle, C., Dev, H., Sundaram, H., & Zhai, C. X. (2019). A generative model for discovering action-based roles and community role compositions on community question answering platforms. 181-192. Paper presented at 13th International Conference on Web and Social Media, ICWSM 2019, Munich, Germany.
Yin, J., Wei, Y., Liu, D., Hu, Y., Lu, Q., Lui Ang, E., ... Zhang, Y. (2019). An extended bacterial reductive pyrimidine degradation pathway that enables nitrogen release from β-alanine. Journal of Biological Chemistry, 294(43), 15662-15671. https://doi.org/10.1074/jbc.RA119.010406
Tong, Y., Wei, Y., Hu, Y., Ang, E. L., Zhao, H., & Zhang, Y. (2019). A pathway for isethionate dissimilation in Bacillus krulwichiae. Applied and environmental microbiology, 85(15), [e00793-19]. https://doi.org/10.1128/AEM.00793-19
Liu, Y., Jia, Y., Wu, Q., & Moore, J. S. (2019). Architecture-Controlled Ring-Opening Polymerization for Dynamic Covalent Poly(disulfide)s. Journal of the American Chemical Society, 141(43), 17075-17080. https://doi.org/10.1021/jacs.9b08957
Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V., & Newmark, P. A. (2019). A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host. PLoS biology, 17(10), [e3000485]. https://doi.org/10.1371/journal.pbio.3000485
Pattillo, C. C., & Moore, J. S. (2019). A tetrahedral molecular cage with a responsive vertex. Chemical Science, 10(29), 7043-7048. https://doi.org/10.1039/c9sc02047k
Zhou, Y., Wei, Y., Lin, L., Xu, T., Ang, E. L., Zhao, H., ... Zhang, Y. (2019). Biochemical and structural investigation of sulfoacetaldehyde reductase from Klebsiella oxytoca. Biochemical Journal, 476(4), 733-746. https://doi.org/10.1042/BCJ20190005
Li, M., Wei, Y., Yin, J., Lin, L., Zhou, Y., Hua, G., ... Zhang, Y. (2019). Biochemical and structural investigation of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense. Biochemical Journal, 476(11), 1605-1619. https://doi.org/10.1042/BCJ20190206
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Pignon, C. P., Lundgren, M. R., Osborne, C. P., & Long, S. P. (2019). Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling. Journal of experimental botany, 70(1), 357-365. https://doi.org/10.1093/jxb/ery345
Cui, C., Reed, J. H., Mirts, E. N., & Lu, Y. (2019). CHAPTER 2: Design and Engineering of Heme Enzymes with O 2 -dependent Catalytic Activity. In M. Ikeda-Saito, & E. Raven (Eds.), Dioxygen-dependent Heme Enzymes (13 ed., pp. 37-62). (RSC Metallobiology; Vol. 2019-January, No. 13). Royal Society of Chemistry. https://doi.org/10.1039/9781788012911-00037
Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Lim, Y. H., Hoon, S., ... Wong, F. T. (2019). Characterization of Cas proteins for CRISPR-Cas editing in streptomycetes. Biotechnology and bioengineering, 116(9), 2330-2338. https://doi.org/10.1002/bit.27021
Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H., & Nair, S. K. (2019). Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098. Organic and Biomolecular Chemistry, 17(6), 1506-1518. https://doi.org/10.1039/c8ob02840k
Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H., & Rao, C. V. (Accepted/In press). Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-019-10243-0
Guo, T., Herber, D. R., & Allison, J. T. (2019). Circuit synthesis using generative adversarial networks (Gans). In AIAA Scitech 2019 Forum (AIAA Scitech 2019 Forum). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2019-2350
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Hu, W., Dang, T., Li, Z., Lei, L., Wang, G., Li, Y., ... Liu, G. L. (2019). C-reaction protein detection in human saliva by nanoplasmonic color imaging. Journal of Biomedical Nanotechnology, 16(8), 1724-1733. https://doi.org/10.1166/jbn.2019.2769
Liu, C., Yu, Y., Chen, D., Zhao, J., Yu, Y., Li, L., & Lu, Y. (2019). Cupredoxin engineered upconversion nanoparticles for ratiometric luminescence sensing of Cu2+. Nanoscale Advances, 1(7), 2580-2585. https://doi.org/10.1039/c9na00168a
Shi, S., Liang, Y., Ang, E. L., & Zhao, H. (2019). Delta integration CRISPR-Cas (Di-CRISPR) in saccharomyces cerevisiae. In Methods in Molecular Biology (pp. 73-91). (Methods in Molecular Biology; Vol. 1927). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-9142-6_6
Lake, R. J., Yang, Z., Zhang, J. J., & Lu, Y. (Accepted/In press). DNAzymes as Activity-Based Sensors for Metal Ions: Recent Applications, Demonstrated Advantages, Current Challenges, and Future Directions. Accounts of chemical research. https://doi.org/10.1021/acs.accounts.9b00419
Orr, J. S., Christensen, D. G., Wolfe, A. J., & Rao, C. V. (2019). Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the tricarboxylic acid cycle and the glyoxylate shunt. Journal of bacteriology, 201(2), [e00410-18]. https://doi.org/10.1128/JB.00410-18
Kuzi, S., & Zhai, C. (2019). Figure retrieval from collections of research articles. In L. Azzopardi, B. Stein, C. Hauff, P. Mayr, D. Hiemstra, & N. Fuhr (Eds.), Advances in Information Retrieval - 41st European Conference on IR Research, ECIR 2019, Proceedings (pp. 696-710). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11437 LNCS). Springer-Verlag. https://doi.org/10.1007/978-3-030-15712-8_45
Patterson, A. E., & Allison, J. T. (2019). Generation and mapping of minimally-restrictive manufacturability constraints for mechanical design problems. In 24th Design for Manufacturing and the Life Cycle Conference; 13th International Conference on Micro- and Nanosystems (Proceedings of the ASME Design Engineering Technical Conference; Vol. 4). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2019-97386
Roy, J., Dibaeinia, P., Fan, T. M., Sinha, S., & Das, A. (2019). Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells. Journal of Lipid Research, 60(2), 375-387. https://doi.org/10.1194/jlr.M088559
Kim, G., Lau, V. M., Halmes, A. J., Oelze, M. L., Moore, J. S., & Li, K. C. (2019). High-intensity focused ultrasound-induced mechanochemical transduction in synthetic elastomers. Proceedings of the National Academy of Sciences of the United States of America, 116(21), 10214-10222. https://doi.org/10.1073/pnas.1901047116
Zhou, Y., Wei, Y., Nanjaraj Urs, A. N., Lin, L., Xu, T., Hu, Y., ... Zhang, Y. (2019). Identification and characterization of a new sulfoacetaldehyde reductase from the human gut bacterium Bifidobacterium kashiwanohense. Bioscience Reports, 39(6), [Y]. https://doi.org/10.1042/BSR20190715
Wei, Y., Tan, Y. L., Ang, E. L., & Zhao, H. (Accepted/In press). Identification and Characterization of Citrus Peel Uronic Acid Oxidase. ChemBioChem. https://doi.org/10.1002/cbic.201900546
Sweedler, J. V. (Accepted/In press). Is the Power List a Representative List? Analytical chemistry. https://doi.org/10.1021/acs.analchem.9b05155
Patterson, A. E., Pereira, T. R., Allison, J., & Messimer, S. L. (2019). IZOD impact properties of full-density fused deposition modeling polymer materials with respect to raster angle and print orientation. Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. https://doi.org/10.1177/0954406219840385
Goswami, A., Zhai, C., & Mohapatra, P. (2019). Learning to diversify for e-commerce search with multi-Armed bandit. CEUR Workshop Proceedings, 2410.
Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S., & Sweedler, J. V. (2019). Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry. Analytical chemistry. https://doi.org/10.1021/acs.analchem.9b01689
Santu, S. K. K., Li, L., Park, D. H., Chang, Y., & Zhai, C. X. (2019). Modeling the influence of popular trending events on user search behavior. In 26th International World Wide Web Conference 2017, WWW 2017 Companion (pp. 535-544). (26th International World Wide Web Conference 2017, WWW 2017 Companion). International World Wide Web Conferences Steering Committee. https://doi.org/10.1145/3041021.3054188
Zavala, J. A., Chadha, R., Steele, D. M., Ray, C., & Moore, J. S. (2019). Molecular sciences made personal: Developing curiosity in general and organic chemistry with a multi-semester utility value intervention. ACS Symposium Series, 1341, 105-118. https://doi.org/10.1021/bk-2019-1341.ch008
Wang, Y., Xia, Y., He, T., Tian, F., Qin, T., Zhai, C. X., & Liu, T. Y. (2019). Multi-agent dual learning. Paper presented at 7th International Conference on Learning Representations, ICLR 2019, New Orleans, United States.
Herber, D. R., & Allison, J. (2019). Nested and simultaneous solution strategies for general combined plant and control design problems. Journal of Mechanical Design, Transactions Of the ASME, 141(1), [011402]. https://doi.org/10.1115/1.4040705
Xie, F., Anapindi, K. D. B., Romanova, E. V., & Sweedler, J. V. (2019). Neuropeptidomics of the mammalian brain. In Neuromethods (pp. 161-177). (Neuromethods; Vol. 146). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-9662-9_14
Nakka, Y. K., Chung, S. J., Allison, J., Aldrich, J. B., & Alvarez-Salazar, O. S. (2019). Nonlinear attitude control of a spacecraft with distributed actuation of solar arrays. Journal of Guidance, Control, and Dynamics, 42(3), 458-475. https://doi.org/10.2514/1.G003478
Liu, X., Zhai, C., Han, W., & Gungor, O. (2019). Numerical facet range partition: Evaluation metric and methods. In 26th International World Wide Web Conference 2017, WWW 2017 Companion (pp. 662-671). (26th International World Wide Web Conference 2017, WWW 2017 Companion). International World Wide Web Conferences Steering Committee. https://doi.org/10.1145/3041021.3054195
Robertson, L. A., Li, Z., Cao, Y., Shkrob, I. A., Tyagi, M., Smith, K. C., ... Z, Y. (2019). Observation of Microheterogeneity in Highly Concentrated Nonaqueous Electrolyte Solutions. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.9b02323
Dau, H., Milenkovic, O., & Puleo, G. J. (Accepted/In press). On the triangle clique cover and Kt clique cover problems. Discrete Mathematics, [111627]. https://doi.org/10.1016/j.disc.2019.111627
Patterson, A. E., Lee, Y. H., & Allison, J. T. (2019). Overview of the development and enforcement of process-driven manufacturability constraints in product design. In 24th Design for Manufacturing and the Life Cycle Conference; 13th International Conference on Micro- and Nanosystems (Proceedings of the ASME Design Engineering Technical Conference; Vol. 4). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2019-97384
Taylor, S. H., & Long, S. P. (2019). Phenotyping photosynthesis on the limit - a critical examination of RACiR. The New phytologist, 221(2), 621-624. https://doi.org/10.1111/nph.15382
De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E., & Long, S. P. (Accepted/In press). Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light. New Phytologist. https://doi.org/10.1111/nph.16142
Zhai, C., Liu, Y., Zhang, Q., Liao, X., & Ren, Z. (2019). Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 11772 LNCS, v-vi. https://doi.org/10.1145/2915031.2915032
Kwak, S., Yun, E. J., Lane, S., Oh, E. J., Kim, K. H., & Jin, Y. S. (Accepted/In press). Redirection of the Glycolytic Flux Enhances Isoprenoid Production in Saccharomyces cerevisiae. Biotechnology Journal, [1900173]. https://doi.org/10.1002/biot.201900173
Cao, T., Morales-Soto, N., Jia, J., Baig, N. F., Dunham, S. J. B., Ellis, J., ... Bohn, P. W. (2019). Spatiotemporal dynamics of molecular messaging in bacterial co-cultures studied by multimodal chemical imaging. In T. Dai, J. Popp, & M. X. Wu (Eds.), Photonic Diagnosis and Treatment of Infections and Inflammatory Diseases II [108630A] (Proceedings of SPIE - The International Society for Optical Engineering; Vol. 10863). SPIE. https://doi.org/10.1117/12.2501349
Lu, T., Liu, F., Mao, J., & Hua, Q. (2019). Synthetic, Context-Dependent Microbial Consortium of Predator and Prey. ACS synthetic biology. https://doi.org/10.1021/acssynbio.9b00110
Lane, S., Zhang, Y., Yun, E. J., Ziolkowski, L., Zhang, G., Jin, Y. S., & Avalos, J. L. (Accepted/In press). Xylose assimilation enhances the production of isobutanol in engineered Saccharomyces cerevisiae. Biotechnology and bioengineering. https://doi.org/10.1002/bit.27202
Xue, C., Zhang, S., Li, C., Yu, X., Ouyang, C., Lu, Y., & Wu, Z. S. (Accepted/In press). Y-Shaped Backbone-Rigidified Triangular DNA Scaffold-Directed Stepwise Movement of a DNAzyme Walker for Sensitive MicroRNA Imaging within Living Cells. Analytical chemistry. https://doi.org/10.1021/acs.analchem.9b03784
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Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., ... Erdman, J. W. (2019). 13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study. Nutrition Research, 61, 102-108. https://doi.org/10.1016/j.nutres.2018.10.007
Sabuncu, S., Reed, J. H., Lu, Y., & Moënne-Loccoz, P. (2018). Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle. Journal of the American Chemical Society, 140(50), 17389-17393. https://doi.org/10.1021/jacs.8b11037
Yang, Z., Loh, K. Y., Chu, Y. T., Feng, R., Satyavolu, N. S. R., Xiong, M., ... Lu, Y. (2018). Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles. Journal of the American Chemical Society, 140(50), 17656-17665. https://doi.org/10.1021/jacs.8b09867
Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., ... Rodriguez-Zas, S. L. (2018). Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia. Frontiers in Systems Neuroscience, 12, [63]. https://doi.org/10.3389/fnsys.2018.00063
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Singh, R. K., Singh, R., Sivakumar, D., Kondaveeti, S., Kim, T., Li, J., ... Lee, J. K. (2018). Insights into Cell-Free Conversion of CO2 to Chemicals by a Multienzyme Cascade Reaction. ACS Catalysis, 8(12), 11085-11093. https://doi.org/10.1021/acscatal.8b02646
Ou, Z., Song, X., Huang, W., Jiang, X., Qu, S., Wang, Q., ... Chen, Q. (2018). Colloidal Metal-Organic Framework Hexapods Prepared from Postsynthesis Etching with Enhanced Catalytic Activity and Rollable Packing. ACS Applied Materials and Interfaces, 10(48), 40990-40995. https://doi.org/10.1021/acsami.8b17477
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Tabe-Bordbar, S., Emad, A., Zhao, S. D., & Sinha, S. (2018). A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. Scientific reports, 8(1), [6620]. https://doi.org/10.1038/s41598-018-24937-4
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Yu, S., Liu, J. J., Yun, E. J., Kwak, S., Kim, K. H., & Jin, Y-S. (2018). Production of a human milk oligosaccharide 2'-fucosyllactose by metabolically engineered Saccharomyces cerevisiae. Microbial cell factories, 17(1), [101]. https://doi.org/10.1186/s12934-018-0947-2
Shen, M., Qu, Z., Deslaurier, J., Welle, T. M., Sweedler, J. V., & Chen, R. (2018). Single Synaptic Observation of Cholinergic Neurotransmission on Living Neurons: Concentration and Dynamics. Journal of the American Chemical Society, 140(25), 7764-7768. https://doi.org/10.1021/jacs.8b01989
Karig, D., Michael Martini, K., Lu, T., DeLateur, N. A., Goldenfeld, N., & Weiss, R. (2018). Stochastic Turing patterns in a synthetic bacterial population. Proceedings of the National Academy of Sciences of the United States of America, 115(26), 6572-6577. https://doi.org/10.1073/pnas.1720770115
Petronico, A., Moneypenny, T. P., Nicolau, B. G., Moore, J. S., Nuzzo, R. G., & Gewirth, A. A. (2018). Solid-Liquid Lithium Electrolyte Nanocomposites Derived from Porous Molecular Cages. Journal of the American Chemical Society, 140(24), 7504-7509. https://doi.org/10.1021/jacs.8b00886
Bhagi-Damodaran, A., Reed, J. H., Zhu, Q., Shi, Y., Hosseinzadeh, P., Sandoval, B. A., ... Lu, Y. (2018). Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase. Proceedings of the National Academy of Sciences of the United States of America, 115(24), 6195-6200. https://doi.org/10.1073/pnas.1720298115
Kim, H., Oh, E. J., Lane, S. T., Lee, W. H., Cate, J. H. D., & Jin, Y-S. (2018). Enhanced cellobiose fermentation by engineered Saccharomyces cerevisiae expressing a mutant cellodextrin facilitator and cellobiose phosphorylase. Journal of Biotechnology, 275, 53-59. https://doi.org/10.1016/j.jbiotec.2018.04.008
Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., ... Sweedler, J. V. (2018). A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms. Analytical chemistry, 90(11), 6725-6734. https://doi.org/10.1021/acs.analchem.8b00560
Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Erratum: Farming with crops and rocks to address global climate, food and soil security (Nature Plants (2018), DOI: 10.1038/s41477-018-0108-y). Nature Plants, 4(6). https://doi.org/10.1038/s41477-018-0162-5
Lopez Hernandez, H., Lee, O. P., Possanza, C., Kaitz, J. A., Park, C. W., Plantz, C. L., ... White, S. R. (2018). Accelerated Thermal Depolymerization of Cyclic Polyphthalaldehyde with a Polymeric Thermoacid Generator. Macromolecular Rapid Communications, 39(11), [1800046]. https://doi.org/10.1002/marc.201800046
Puleo, G. J., & Milenkovic, O. (2018). Correlation Clustering and Biclustering with Locally Bounded Errors. IEEE Transactions on Information Theory, 64(6), 4105-4119. https://doi.org/10.1109/TIT.2018.2819696
Lian, J., Bao, Z., Hu, S., & Zhao, H. (2018). Engineered CRISPR/Cas9 system for multiplex genome engineering of polyploid industrial yeast strains. Biotechnology and bioengineering, 115(6), 1630-1635. https://doi.org/10.1002/bit.26569
HamediRad, M., Lian, J., Li, H., & Zhao, H. (2018). RNAi assisted genome evolution unveils yeast mutants with improved xylose utilization. Biotechnology and bioengineering, 115(6), 1552-1560. https://doi.org/10.1002/bit.26570
Kim, J. S., Daum, M. A., Jin, Y-S., & Miller, M. J. (2018). Yeast derived lysA2 can control bacterial contamination in ethanol fermentation. Viruses, 10(6), [281]. https://doi.org/10.3390/v10060281
Iritani, K., Ikeda, M., Yang, A., Tahara, K., Anzai, M., Hirose, K., ... Tobe, Y. (2018). Electrostatically Driven Guest Binding in a Self-Assembled Porous Network at the Liquid/Solid Interface. Langmuir, 34(21), 6036-6045. https://doi.org/10.1021/acs.langmuir.8b00699
Montoto, E. C., Cao, Y., Hernández-Burgos, K., Sevov, C. S., Braten, M. N., Helms, B. A., ... Rodríguez-López, J. (2018). Effect of the Backbone Tether on the Electrochemical Properties of Soluble Cyclopropenium Redox-Active Polymers. Macromolecules, 51(10), 3539-3546. https://doi.org/10.1021/acs.macromol.8b00574
Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., ... Sweedler, J. V. (2018). Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins. ChemPhysChem, 19(10), 1180-1191. https://doi.org/10.1002/cphc.201701364
Checco, J. W., Zhang, G., Yuan, W. D., Yu, K., Yin, S. Y., Roberts-Galbraith, R. H., ... Sweedler, J. V. (2018). Molecular and Physiological Characterization of a Receptor for d -Amino Acid-Containing Neuropeptides. ACS chemical biology, 13(5), 1343-1352. https://doi.org/10.1021/acschembio.8b00167
Tang, Q., Lu, T., & Liu, S. J. (2018). Engineering the bacterium Comamonas testosteroni CNB-1: Plasmid curing and genetic manipulation. Biochemical Engineering Journal, 133, 74-82. https://doi.org/10.1016/j.bej.2018.01.030
Anapindi, K. D. B., Romanova, E. V., Southey, B. R., & Sweedler, J. V. (2018). Peptide identifications and false discovery rates using different mass spectrometry platforms. Talanta, 182, 456-463. https://doi.org/10.1016/j.talanta.2018.01.062
Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., ... Jin, Y. S. (2018). Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass. Biotechnology for Biofuels, 11(1), [140]. https://doi.org/10.1186/s13068-018-1135-7
Robertson, I. D., Yourdkhani, M., Centellas, P. J., Aw, J. E., Ivanoff, D. G., Goli, E., ... White, S. R. (2018). Rapid energy-efficient manufacturing of polymers and composites via frontal polymerization. Nature, 557(7704), 223-227. https://doi.org/10.1038/s41586-018-0054-x
Moneypenny, T. P., Yang, A., Walter, N. P., Woods, T. J., Gray, D. L., Zhang, Y., & Moore, J. S. (2018). Product Distribution from Precursor Bite Angle Variation in Multitopic Alkyne Metathesis: Evidence for a Putative Kinetic Bottleneck. Journal of the American Chemical Society, 140(17), 5825-5833. https://doi.org/10.1021/jacs.8b02184
Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H., & Jin, Y. S. (2018). A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii. Applied and environmental microbiology, 84(10), [e02858-17]. https://doi.org/10.1128/AEM.02858-17
Sweedler, J. V. (2018). A Resource for Our Reagents: ACS Reagent Chemicals. Analytical Chemistry, 90(9). https://doi.org/10.1021/acs.analchem.8b01729
Li, L., Andrén, P. E., & Sweedler, J. V. (2018). Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS. Journal of the American Society for Mass Spectrometry, 29(5), 801-806. https://doi.org/10.1007/s13361-018-1939-5
Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., ... Sweedler, J. V. (2018). Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry. Journal of the American Society for Mass Spectrometry, 29(5), 923-934. https://doi.org/10.1007/s13361-018-1898-x
Dunham, S. J. B., Ellis, J. F., Baig, N. F., Morales-Soto, N., Cao, T., Shrout, J. D., ... Sweedler, J. V. (2018). Quantitative SIMS Imaging of Agar-Based Microbial Communities. Analytical chemistry, 90(9), 5654-5663. https://doi.org/10.1021/acs.analchem.7b05180
Milenkovic, O., Gabrys, R., Kiah, H. M., & Yazdi, S. M. H. T. (2018). Exabytes in a Test Tube: With the right coding, DNA could archive our entire civilization. IEEE Spectrum, 55(5), 40-45. https://doi.org/10.1109/MSPEC.2018.8352574
Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., ... Murphy, D. (2018). The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system. Neurobiology of Aging, 65, 178-191. https://doi.org/10.1016/j.neurobiolaging.2018.01.008
De Souza, A. P., & Long, S. P. (2018). Toward improving photosynthesis in cassava: Characterizing photosynthetic limitations in four current African cultivars. Food and Energy Security, 7(2), [e00130]. https://doi.org/10.1002/fes3.130
Goli, E., Robertson, I. D., Geubelle, P. H., & Moore, J. S. (2018). Frontal Polymerization of Dicyclopentadiene: A Numerical Study. Journal of Physical Chemistry B, 122(16), 4583-4591. https://doi.org/10.1021/acs.jpcb.7b12316
Yun, E. J., Lee, J., Kim, D. H., Kim, J., Kim, S., Jin, Y-S., & Kim, K. H. (2018). Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica. Journal of Biotechnology, 272-273, 7-13. https://doi.org/10.1016/j.jbiotec.2018.02.011
Limsakul, P., Peng, Q., Wu, Y., Allen, M. E., Liang, J., Remacle, A. G., ... Wang, Y. (2018). Directed Evolution to Engineer Monobody for FRET Biosensor Assembly and Imaging at Live-Cell Surface. Cell chemical biology, 25(4), 370-379.e4. https://doi.org/10.1016/j.chembiol.2018.01.002
Sung, J., Robb, M. J., White, S. R., Moore, J. S., & Sottos, N. R. (2018). Interfacial mechanophore activation using laser-induced stress waves. Journal of the American Chemical Society, 140(15), 5000-5003. https://doi.org/10.1021/jacs.8b01427
Yang, N., Anapindi, K. D. B., Rubakhin, S., Wei, P., Yu, Q., Li, L., ... Sweedler, J. V. (2018). Neuropeptidomics of the Rat Habenular Nuclei. Journal of Proteome Research, 17(4), 1463-1473. https://doi.org/10.1021/acs.jproteome.7b00811
Sun, H., Zhang, H., Ang, E. L., & Zhao, H. (2018). Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates. Bioorganic and Medicinal Chemistry, 26(7), 1275-1284. https://doi.org/10.1016/j.bmc.2017.06.043
Gabrys, R., Yaakobi, E., & Milenkovic, O. (2018). Codes in the Damerau Distance for Deletion and Adjacent Transposition Correction. IEEE Transactions on Information Theory, 64(4), 2550-2570. https://doi.org/10.1109/TIT.2017.2778143
Wei, Y., Ang, E. L., & Zhao, H. (2018). Recent developments in the application of P450 based biocatalysts. Current Opinion in Chemical Biology, 43, 1-7. https://doi.org/10.1016/j.cbpa.2017.08.006
Sekerak, N. M., Hutchins, K. M., Luo, B., Kang, J. G., Braun, P. V., Chen, Q., & Moore, J. S. (2018). Size control of cross-linked carboxy-functionalized polystyrene particles: Four orders of magnitude of dimensional versatility. European Polymer Journal, 101, 202-210. https://doi.org/10.1016/j.eurpolymj.2018.01.028
Baran, M. J., Braten, M. N., Montoto, E. C., Gossage, Z. T., Ma, L., Chénard, E., ... Helms, B. A. (Accepted/In press). Designing Redox-Active Oligomers for Crossover-Free, Non-Aqueous Redox-Flow Batteries with High Volumetric Energy Density. Chemistry of Materials. https://doi.org/10.1021/acs.chemmater.8b01318
Hackett, L. P., Li, W., Ameen, A., Goddard, L. L., & Liu, G. L. (2018). Plasmonic Metal-Insulator-Metal Capped Polymer Nanopillars for SERS Analysis of Protein-Protein Interactions. Journal of Physical Chemistry C, 122(11), 6255-6266. https://doi.org/10.1021/acs.jpcc.7b08656
Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., ... Kelleher, N. L. (2018). Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains. Analytical chemistry, 90(6), 3802-3810. https://doi.org/10.1021/acs.analchem.7b04108
Eriksen, D. T., Chao, R., & Zhao, H. (2018). Applying advanced dna assembly methods to generate pathway libraries. In Synthetic Biology: Parts, Devices and Applications (pp. 331-347). Wiley-VCH Verlag. https://doi.org/10.1002/9783527688104.ch16
Ravanmehr, V., Kim, M., Wang, Z., & Milenkovic, O. (2018). ChIPWig: A random access-enabling lossless and lossy compression method for ChIP-seq data. Bioinformatics, 34(6), 911-919. https://doi.org/10.1093/bioinformatics/btx685
Lu, X., Katz, J. S., Schmitt, A. K., & Moore, J. S. (2018). A Robust Oil-in-Oil Emulsion for the Nonaqueous Encapsulation of Hydrophilic Payloads. Journal of the American Chemical Society, 140(10), 3619-3625. https://doi.org/10.1021/jacs.7b11847
Cepeda-Plaza, M., McGhee, C. E., & Lu, Y. (2018). Evidence of a General Acid-Base Catalysis Mechanism in the 8-17 DNAzyme. Biochemistry, 57(9), 1517-1522. https://doi.org/10.1021/acs.biochem.7b01096
Sweedler, J. V. (2018). Who Are Your Coauthors? Make Sure to Follow Appropriate Practices. Analytical chemistry, 90(5), 2977-2978. https://doi.org/10.1021/acs.analchem.8b00785
Wang, Y., Ren, H., & Zhao, H. (2018). Expanding the boundary of biocatalysis: design and optimization of in vitro tandem catalytic reactions for biochemical production. Critical Reviews in Biochemistry and Molecular Biology, 53(2), 115-129. https://doi.org/10.1080/10409238.2018.1431201
Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Farming with crops and rocks to address global climate, food and soil security /631/449 /706/1143 /704/47 /704/106 perspective. Nature Plants, 4(3), 138-147. https://doi.org/10.1038/s41477-018-0108-y
Hackett, L. P., Ameen, A., Li, W., Dar, F. K., Goddard, L. L., & Liu, G. L. (2018). Spectrometer-Free Plasmonic Biosensing with Metal-Insulator-Metal Nanocup Arrays. ACS Sensors, 3(2), 290-298. https://doi.org/10.1021/acssensors.7b00878
Sweedler, J. V. (2018). The ACS Measurement Journals, the Analytical Division, and Pittcon 2018: A Busy Four Days. Analytical chemistry, 90(4). https://doi.org/10.1021/acs.analchem.8b00575
Blanchard, A. E., Liao, C., & Lu, T. (2018). Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch. Biophysical journal, 114(3), 737-746. https://doi.org/10.1016/j.bpj.2017.12.010
Chang, Y., & Zhai, C. (2018). Welcome by the general chairs. WSDM 2018 - Proceedings of the 11th ACM International Conference on Web Search and Data Mining, 2018-Febuary, iii.
Kumar, D., Long, S. P., & Singh, V. (2018). Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation. GCB Bioenergy, 10(2), 92-107. https://doi.org/10.1111/gcbb.12478
Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B., & Ort, D. R. (2018). Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis. Plant physiology, 176(2), 1215-1232. https://doi.org/10.1104/pp.17.01401
Rao, C. V. (2018). Sparsity of Linear Discrete-Time Optimal Control Problems with $l-1$ Objectives. IEEE Transactions on Automatic Control, 63(2), 513-517. [7993042]. https://doi.org/10.1109/TAC.2017.2732286
Slattery, R. A., Walker, B. J., Weber, A. P. M., & Ort, D. R. (2018). The impacts of fluctuating light on crop performance. Plant physiology, 176(2), 990-1003. https://doi.org/10.1104/pp.17.01234
Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., ... Sohn, J. H. (2018). Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus. Journal of Biotechnology, 266, 27-33. https://doi.org/10.1016/j.jbiotec.2017.12.001
Qi, M., Philip, M. C., Yang, N., & Sweedler, J. V. (2018). Single Cell Neurometabolomics. ACS Chemical Neuroscience, 9(1), 40-50. https://doi.org/10.1021/acschemneuro.7b00304
Zhao, J., Gao, J., Xue, W., Di, Z., Xing, H., Lu, Y., & Li, L. (2018). Upconversion Luminescence-Activated DNA Nanodevice for ATP Sensing in Living Cells. Journal of the American Chemical Society, 140(2), 578-581. https://doi.org/10.1021/jacs.7b11161
Feinberg, A. M., Hernandez, H. L., Plantz, C. L., Mejia, E. B., Sottos, N. R., White, S. R., & Moore, J. S. (2018). Cyclic Poly(phthalaldehyde): Thermoforming a Bulk Transient Material. ACS Macro Letters, 7(1), 47-52. https://doi.org/10.1021/acsmacrolett.7b00769
Seo, S. O., Lu, T., Jin, Y-S., & Blaschek, H-P. M. (2018). Development of an oxygen-independent flavin mononucleotide-based fluorescent reporter system in Clostridium beijerinckii and its potential applications. Journal of Biotechnology, 265, 119-126. https://doi.org/10.1016/j.jbiotec.2017.11.003
Tang, S., Tang, L., Lu, X., Liu, H., & Moore, J. S. (2018). Programmable Payload Release from Transient Polymer Microcapsules Triggered by a Specific Ion Coactivation Effect. Journal of the American Chemical Society, 140(1), 94-97. https://doi.org/10.1021/jacs.7b11022
Sun, H., Zhao, H., & Ang, E. L. (2018). A coupled chlorinase-fluorinase system with a high efficiency of trans -halogenation and a shared substrate tolerance. Chemical Communications, 54(68), 9458-9461. https://doi.org/10.1039/c8cc04436h
Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V., & Shen, M. (2018). A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes. Chemical Science, 9(22), 4937-4941. https://doi.org/10.1039/c8sc01131a
Guo, T., Lohan, D. J., Allison, J. T., Cang, R., & Ren, Y. (2018). An indirect design representation for topology optimization using variational autoencoder and style transfer. In AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials (210049 ed.). (AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference, 2018; No. 210049). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2018-0804
Checco, J. W., Zhang, G., Yuan, W. D., Le, Z. W., Jing, J., & Sweedler, J. V. (2018). Aplysia allatotropin-related peptide and its newly identified D-amino acid-containing epimer both activate a receptor and a neuronal target. Journal of Biological Chemistry, 293(43), 16862-16873. https://doi.org/10.1074/jbc.RA118.004367
Herber, D. R., & Allison, J. (2018). A problem class with combined architecture, plant, and control design applied to vehicle suspensions. In 44th Design Automation Conference (Vol. 2A-2018). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2018-86213
Lin, C., Herber, D. R., Vedant, V., Lee, Y. H., Ghosh, A. R. M., Ewoldt, R. H., & Allison, J. (2018). Attitude control system complexity reduction via tailored viscoelastic damping co-design. In C. A. H. Walker (Ed.), Guidance, navigation, and control, 2018 (pp. 731-743). (Advances in the Astronautical Sciences; Vol. 164). Univelt Inc..
Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y-S., Blaschek, H-P. M., & Wang, Y. (2018). Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example. In Methods in Molecular Biology (pp. 297-325). (Methods in Molecular Biology; Vol. 1772). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7795-6_17
Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L., & Sweedler, J. V. (2018). Bioinformatics for prohormone and neuropeptide discovery. In Methods in Molecular Biology (pp. 71-96). (Methods in Molecular Biology; Vol. 1719). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7537-2_5
Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E., & Singh, V. (Accepted/In press). Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production. JAOCS, Journal of the American Oil Chemists' Society. https://doi.org/10.1002/aocs.12070
Hu, Y., Ameen, A., Hsiao, A., & Liu, G. L. (2018). Colorimetric imaging of layer-by-layer molecular deposition on nanoplasmonic lycurgus cup array. Sensors and Actuators, B: Chemical, 254, 827-833. https://doi.org/10.1016/j.snb.2017.07.039
Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T., & Sweedler, J. V. (2018). Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit. Physical Chemistry Chemical Physics, 20(34), 22047-22057. https://doi.org/10.1039/c8cp03661f
Weir, N. A., & Alleyne, A. G. (2018). Controller design for two-input single-output systems exploiting plant/controller alignment. In Advances in Control Design Methods; Advances in Nonlinear Control; Advances in Robotics; Assistive and Rehabilitation Robotics; Automotive Dynamics and Emerging Powertrain Technologies; Automotive Systems; Bio Engineering Applications; Bio-Mechatronics and Physical Human Robot Interaction; Biomedical and Neural Systems; Biomedical and Neural Systems Modeling, Diagnostics, and Healthcare (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 1). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9182
Tasan, I., Sustackova, G., Zhang, L., Kim, J., Sivaguru, M., HamediRad, M., ... Zhao, H. (2018). CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci. Nucleic acids research, 46(17), [e100]. https://doi.org/10.1093/nar/gky501
Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C., & Jin, Y-S. (2018). Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals. In Advances in Biochemical Engineering/Biotechnology (pp. 175-215). (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/10_2016_22
Tannous, P. J., & Alleyne, A. G. (2018). Fault detection and isolation for complex thermal management systems. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9132
Goli, E., Robertson, I. D., Agarwal, H., Pruitt, E. L., Grolman, J. M., Geubelle, P. H., & Moore, J. S. (Accepted/In press). Frontal polymerization accelerated by continuous conductive elements. Journal of Applied Polymer Science, [47418]. https://doi.org/10.1002/app.47418
Docimo, D. J., Pangborn, H. C., & Alleyne, A. G. (2018). Hierarchical control for electro-thermal power management of an electric vehicle powertrain. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9215
Rasmussen, B. P., Price, C., Koeln, J., Keating, B., & Alleyne, A. G. (2018). HVAC system modeling and control: Vapor compression system modeling and control. In Advances in Industrial Control (9783319684611 ed., pp. 73-103). (Advances in Industrial Control; No. 9783319684611). Springer International Publishing. https://doi.org/10.1007/978-3-319-68462-8_4
Armstrong, A., Wagoner Johnson, A. J., & Alleyne, A. G. (2018). Improved cross-coupled iterative learning control for contouring NURBS curves. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9145
Larson, T. H., Balikian, R. J., Ruiz-Vera, U., & Ort, D. R. (2018). In-situ cassava root size measurement using ground penetrating radar (GPR). Proceedings of the Symposium on the Application of Geophyics to Engineering and Environmental Problems, SAGEEP, 2018-March.
Walukiewicz, H. E., Ordal, G. W., & Rao, C. V. (2018). In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway. In Methods in Molecular Biology (pp. 95-105). (Methods in Molecular Biology; Vol. 1729). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7577-8_10
Goswami, A., Zhai, C., & Mohapatra, P. (2018). Learning to rank and discover for E-commerce search. In P. Perner (Ed.), Machine Learning and Data Mining in Pattern Recognition - 14th International Conference, MLDM 2018, Proceedings (pp. 331-346). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 10935 LNAI). Springer-Verlag. https://doi.org/10.1007/978-3-319-96133-0_25
Patterson, A. E., & Allison, J. T. (2018). Manufacturability constraint formulation for design under hybrid additive-subtractive manufacturing. In 23rd Design for Manufacturing and the Life Cycle Conference; 12th International Conference on Micro- and Nanosystems (Proceedings of the ASME Design Engineering Technical Conference; Vol. 4). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2018-85637
Liu, J., Liang, Y. J., Ren, P. L., & Gaj, T. (2018). Manufacturing and delivering genome-editing proteins. In Methods in Molecular Biology (pp. 253-273). (Methods in Molecular Biology; Vol. 1867). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-8799-3_19
Dau, H., & Milenkovic, O. (2018). Maxminsum steiner systems for access balancing in distributed storage. SIAM Journal on Discrete Mathematics, 32(3), 1644-1671. https://doi.org/10.1137/17M1143964
Schultz, C., Lian, J., & Zhao, H. (2018). Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion. In N. Scrutton (Ed.), Methods in Enzymology (pp. 265-276). (Methods in Enzymology; Vol. 608). Academic Press Inc.. https://doi.org/10.1016/bs.mie.2018.04.010
Peng, J., Milenkovic, O., & Ochoa, I. (2018). METHCOMP: A special purpose compression platform for DNA methylation data. Bioinformatics, 34(15), 2654-2656. https://doi.org/10.1093/bioinformatics/bty143
Jagtap, S. S., & Rao, C. V. (Accepted/In press). Microbial conversion of xylose into useful bioproducts. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-018-9294-9
ALSaad, F., Boughoula, A., Geigle, C., Sundaram, H., & Zhai, C. (2018). Mining MOOC lecture transcripts to construct concept dependency graphs. Paper presented at 11th International Conference on Educational Data Mining, EDM 2018, Buffalo, United States.
Angatkina, O., & Alleyne, A. G. (2018). Model predictive control of a pumped two-phase cooling system with microchannel heat exchangers. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9143
Koeln, J., Keating, B., Alleyne, A. G., Price, C., & Rasmussen, B. P. (2018). Multi-zone temperature modeling and control. In Advances in Industrial Control (9783319684611 ed., pp. 139-166). (Advances in Industrial Control; No. 9783319684611). Springer International Publishing. https://doi.org/10.1007/978-3-319-68462-8_6
Tai, H. C., Checco, J. W., & Sweedler, J. V. (2018). Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS. In Methods in Molecular Biology (pp. 107-118). (Methods in Molecular Biology; Vol. 1719). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7537-2_7
Peddada, S. R. T., Herber, D. R., Pangborn, H. C., Alleyne, A. G., & Allison, J. T. (2018). Optimal flow control and single split architecture exploration for fluid-based thermal management. In 44th Design Automation Conference (Proceedings of the ASME Design Engineering Technical Conference; Vol. 2A-2018). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2018-86148
Garcia-Ruiz, E., HamediRad, M., & Zhao, H. (2018). Pathway design, engineering, and optimization. In Advances in Biochemical Engineering/Biotechnology (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/10_2016_12
Kong, I. I., Turner, T. L., Kim, H., Kim, S. R., & Jin, Y. S. (2018). Phenotypic evaluation and characterization of 21 industrial Saccharomyces cerevisiae yeast strains. FEMS yeast research, 18(1). https://doi.org/10.1093/femsyr/foy001
Jiang, J., Wang, X., Li, S., Ding, F., Li, N., Meng, S., ... Liu, G. L. (2018). Plasmonic nano-arrays for ultrasensitive bio-sensing. Nanophotonics, 7(9), 1517-1531. https://doi.org/10.1515/nanoph-2018-0023
Jagtap, S. S., & Rao, C. V. (2018). Production of d-arabitol from d-xylose by the oleaginous yeast Rhodosporidium toruloides IFO0880. Applied Microbiology and Biotechnology, 102(1), 143-151. https://doi.org/10.1007/s00253-017-8581-1
Guo, T., Herber, D. R., & Allison, J. (2018). Reducing evaluation cost for circuit synthesis using active learning. In 44th Design Automation Conference (Proceedings of the ASME Design Engineering Technical Conference; Vol. 2A-2018). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC201885654
Lee, Y. H., Schuh, J. K., Ewoldt, R. H., & Allison, J. T. (2018). Simultaneous design of non-newtonian lubricant and surface texture using surrogate-based optimization. In AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials (210049 ed.). (AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference, 2018; No. 210049). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2018-1906
Morales-Soto, N., Dunham, S. J. B., Baig, N. F., Ellis, J. F., Madukoma, C. S., Bohn, P. W., ... Shrout, J. D. (2018). Spatially dependent alkyl quinolone signaling responses to antibiotics in Pseudomonas aeruginosa swarms. Journal of Biological Chemistry, 293(24), 9544-9552. https://doi.org/10.1074/jbc.RA118.002605
Li, P., & Milenkovic, O. (2018). Submodular hypergraphs: P-Laplacians, cheeger inequalities and spectral clustering. In J. Dy, & A. Krause (Eds.), 35th International Conference on Machine Learning, ICML 2018 (pp. 4690-4719). (35th International Conference on Machine Learning, ICML 2018; Vol. 7). International Machine Learning Society (IMLS).
Lee, D. G., Jeon, J. M., Yang, Y. H., Jin, Y-S., & Yoon, J. J. (Accepted/In press). The pH-stat Butyric Acid Feeding Strategy Coupled with Gas-Stripping for n-Butanol Production by Clostridium beijerinckii. Waste and Biomass Valorization. https://doi.org/10.1007/s12649-018-0461-0
Goswami, A., Zhai, C., & Mohapatra, P. (2018). Towards optimization of e-commerce search and discovery. CEUR Workshop Proceedings, 2319.
Zhang, J., Xing, H., & Lu, Y. (2018). Translating molecular detections into a simple temperature test using a target-responsive smart thermometer. Chemical Science, 9(16), 3906-3910. https://doi.org/10.1039/c7sc05325h
Lane, S., Dong, J., & Jin, Y-S. (Accepted/In press). Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae. Bioresource Technology. https://doi.org/10.1016/j.biortech.2018.04.013
Huang, E. W., Wang, S., & Zhai, C. X. (2018). VisAGE: Integrating external knowledge into electronic medical record visualization. Pacific Symposium on Biocomputing, 0(212669), 578-589. https://doi.org/10.1142/9789813235533_0053
LeBauer, D. S., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P., & Dietze, M. C. (2018). BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production. GCB Bioenergy, 10(1), 61-71. https://doi.org/10.1111/gcbb.12420