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Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., ... Freemont, P. S. (2019). Building a global alliance of biofoundries. Nature communications, 10(1), [2040]. https://doi.org/10.1038/s41467-019-10079-2

Liu, K., Pan, C., Kuhn, A., Nievergelt, A. P., Fantner, G. E., Milenkovic, O., & Radenovic, A. (2019). Detecting topological variations of DNA at single-molecule level. Nature communications, 10(1), [3]. https://doi.org/10.1038/s41467-018-07924-1

Liu, J. J., Zhang, G. C., Kwak, S., Oh, E. J., Yun, E. J., Chomvong, K., ... Jin, Y-S. (2019). Overcoming the thermodynamic equilibrium of an isomerization reaction through oxidoreductive reactions for biotransformation. Nature communications, 10(1), [1356]. https://doi.org/10.1038/s41467-019-09288-6

Xing, M., Wei, Y., Zhou, Y., Zhang, J., Lin, L., Hu, Y., ... Zhang, Y. (2019). Radical-mediated C-S bond cleavage in C2 sulfonate degradation by anaerobic bacteria. Nature communications, 10(1), [1609]. https://doi.org/10.1038/s41467-019-09618-8

Herber, D. R., & Allison, J. (2019). A Problem Class with Combined Architecture, Plant, and Control Design Applied to Vehicle Suspensions. Journal of Mechanical Design, Transactions Of the ASME, 141(10), [101401]. https://doi.org/10.1115/1.4043312

Peddada, S. R. T., Herber, D. R., Pangborn, H. C., Alleyne, A. G., & Allison, J. (2019). Optimal flow control and single split architecture exploration for fluid-based thermal management. Journal of Mechanical Design, Transactions Of the ASME, 141(8), [083401]. https://doi.org/10.1115/1.4043203

Shin, M., Kim, J. W., Ye, S., Kim, S., Jeong, D., Lee, D. Y., ... Kim, S. R. (2019). Comparative global metabolite profiling of xylose-fermenting Saccharomyces cerevisiae SR8 and Scheffersomyces stipitis. Applied Microbiology and Biotechnology, 103(13), 5435-5446. https://doi.org/10.1007/s00253-019-09829-5

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-casanovas, N., ... Ort, D. R. (2019). Are we approaching a water ceiling to maize yields in the United States? Ecosphere, 10(6), [e02773]. https://doi.org/10.1002/ecs2.2019.10.issue-6

Barber, E. A., Turasan, H., Gezer, P. G., Devina, D., Liu, G. L., & Kokini, J. (2019). Effect of plasticizing and crosslinking at room temperature on microstructure replication using soft lithography on zein films. Journal of Food Engineering, 250, 55-64. https://doi.org/10.1016/j.jfoodeng.2019.01.018

Tannous, P. J., & Alleyne, A. G. (2019). Fault Detection and Isolation for Complex Thermal Management Systems. Journal of Dynamic Systems, Measurement and Control, Transactions of the ASME, 141(6), [061008]. https://doi.org/10.1115/1.4042675

Hamedirad, M., Weisberg, S., Chao, R., Lian, J., & Zhao, H. (2019). Highly Efficient Single-Pot Scarless Golden Gate Assembly. ACS synthetic biology, 8(5), 1047-1054. https://doi.org/10.1021/acssynbio.8b00480

Sweedler, J. V. (2019). The Periodic Table of Elements at 150. Analytical chemistry, 91(9). https://doi.org/10.1021/acs.analchem.9b01714

Schilling, B., Basisty, N., Christensen, D. G., Sorensen, D., Orr, J. S., Wolfe, A. J., & Rao, C. V. (2019). Global lysine acetylation in Escherichia coli results from growth conditions that favor acetate fermentation. Journal of bacteriology, 201(9), [e00768-18]. https://doi.org/10.1128/JB.00768-18

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T., & Sweedler, J. V. (2019). Investigating brain d-serine: Advocacy for good practices. Acta Physiologica, 226(1), [e13257]. https://doi.org/10.1111/apha.13257

Jia, F., Barber, E., Turasan, H., Seo, S., Dai, R., Liu, G. L., ... Kokini, J. L. (2019). Detection of Pyocyanin Using a New Biodegradable SERS Biosensor Fabricated Using Gold Coated Zein Nanostructures Further Decorated with Gold Nanoparticles. Journal of Agricultural and Food Chemistry, 67(16), 4603-4610. https://doi.org/10.1021/acs.jafc.8b07317

Neumann, E. K., Comi, T. J., Rubakhin, S., & Sweedler, J. V. (2019). Lipid Heterogeneity between Astrocytes and Neurons Revealed by Single-Cell MALDI-MS Combined with Immunocytochemical Classification. Angewandte Chemie - International Edition, 58(18), 5910-5914. https://doi.org/10.1002/anie.201812892

Satyavolu, N. S. R., Peinetti, A. S., Wang, Y., Ali, A. S., Lin, J. W., & Lu, Y. (2019). Silver-Assisted Synthesis of High-Indexed Palladium Tetrahexahedral Nanoparticles and Their Morphological Variants. Chemistry of Materials, 31(8), 2923-2929. https://doi.org/10.1021/acs.chemmater.9b00275

Mirts, E. N., Bhagi-Damodaran, A., & Lu, Y. (2019). Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors. Accounts of chemical research, 52(4), 935-944. https://doi.org/10.1021/acs.accounts.9b00011

Sweedler, J. V. (2019). Advancing the Fields of Measurement Science with Partnerships and Awards. Analytical chemistry, 91(7). https://doi.org/10.1021/acs.analchem.9b01310

Zhang, J. J., & Lu, Y. (2019). Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins. Clinical Chemistry, 65(4), 507-509. https://doi.org/10.1373/clinchem.2018.298836

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., ... Whitney, S. M. (2019). BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco. Plant Cell and Environment, 42(4), 1287-1301. https://doi.org/10.1111/pce.13473

Dikanov, S., Berry, S. M., & Lu, Y. (2019). HYSCORE Insights into the Distribution of the Unpaired Spin Density in an Engineered Cu A Site in Azurin and Its His120Gly Variant Inorganic Chemistry, 58(7), 4437-4445. https://doi.org/10.1021/acs.inorgchem.8b03604

Liu, J. J., Lee, J. W., Yun, E. J., Jung, S. M., Seo, J. H., & Jin, Y-S. (2019). L-Fucose production by engineered Escherichia coli. Biotechnology and bioengineering, 116(4), 904-911. https://doi.org/10.1002/bit.26907

Tannous, P. J., Peddada, S. R. T., Allison, J., Foulkes, T., Pilawa-Podgurski, R. C. N., & Alleyne, A. G. (2019). Model-based temperature estimation of power electronics systems. Control Engineering Practice, 85, 206-215. https://doi.org/10.1016/j.conengprac.2019.01.006

Kim, J., Han, K. Y., Khanna, N., Ha, T., & Belmont, A. S. (2019). Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition. Journal of Cell Science, 132(8), [226563]. https://doi.org/10.1242/jcs.226563

Zhang, J. J., Lan, T., & Lu, Y. (2019). Molecular Engineering of Functional Nucleic Acid Nanomaterials toward In Vivo Applications. Advanced Healthcare Materials, 8(6), [1801158]. https://doi.org/10.1002/adhm.201801158

Baek, Y. S., Goodrich, L. V., Brown, P. J., James, B. T., Moose, S. P., Lambert, K. N., & Riechers, D. E. (2019). Transcriptome profiling and genome-wide association studies reveal Gsts and other defense genes involved in multiple signaling pathways induced by herbicide safener in grain sorghum. Frontiers in Plant Science, 10, [192]. https://doi.org/10.3389/fpls.2019.00192

Sulkanen, A. R., Sung, J., Robb, M. J., Moore, J. S., Sottos, N. R., & Liu, G. Y. (2019). Spatially Selective and Density-Controlled Activation of Interfacial Mechanophores. Journal of the American Chemical Society, 141(9), 4080-4085. https://doi.org/10.1021/jacs.8b10257

Sweedler, J. V. (2019). Salami Publications and Duplicate Submissions: Put Them on Your List of Things to Avoid. Analytical chemistry, 91(5), 3177-3178. https://doi.org/10.1021/acs.analchem.9b00904

Juneja, A., Zhang, G., Jin, Y-S., & Singh, V. (2019). Bioprocessing and technoeconomic feasibility analysis of simultaneous production of D-psicose and ethanol using engineered yeast strain KAM-2GD. Bioresource Technology, 275, 27-34. https://doi.org/10.1016/j.biortech.2018.12.025

Bibak, K., & Milenkovic, O. (2019). Explicit formulas for the weight enumerators of some classes of deletion correcting codes. IEEE Transactions on Communications, 67(3), 1809-1816. [8573841]. https://doi.org/10.1109/TCOMM.2018.2886354

Wang, S., Huang, E., Cairns, J., Peng, J., Wang, L., & Sinha, S. (2019). Identification of pathways associated with chemosensitivity through network embedding. PLoS computational biology, 15(3), e1006864. https://doi.org/10.1371/journal.pcbi.1006864

Kwak, S., Jo, J. H., Yun, E. J., Jin, Y-S., & Seo, J. H. (2019). Production of biofuels and chemicals from xylose using native and engineered yeast strains. Biotechnology Advances, 37(2), 271-283. https://doi.org/10.1016/j.biotechadv.2018.12.003

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., ... Long, S. P. (2019). Reply to: Brazilian ethanol expansion subject to limitations. Nature Climate Change, 9(3), 211-212. https://doi.org/10.1038/s41558-019-0423-y

Epstein, E. S., Martinetti, L., Kollarigowda, R. H., Carey-De La Torre, O., Moore, J. S., Ewoldt, R. H., & Braun, P. V. (2019). Modulating Noncovalent Cross-links with Molecular Switches. Journal of the American Chemical Society, 141(8), 3597-3604. https://doi.org/10.1021/jacs.8b12762

Oh, E. J., Wei, N., Kwak, S., Kim, H., & Jin, Y-S. (2019). Overexpression of RCK1 improves acetic acid tolerance in Saccharomyces cerevisiae. Journal of Biotechnology, 292, 1-4. https://doi.org/10.1016/j.jbiotec.2018.12.013

Yun, E. J., Liu, J. J., Lee, J. W., Kwak, S., Yu, S., Kim, K. H., & Jin, Y-S. (2019). Biosynthetic Routes for Producing Various Fucosyl-Oligosaccharides. ACS synthetic biology, 8(2), 415-424. https://doi.org/10.1021/acssynbio.8b00436

Kosuge, T., Zhu, X., Lau, V. M., Aoki, D., Martinez, T. J., Moore, J. S., & Otsuka, H. (2019). Multicolor Mechanochromism of a Polymer/Silica Composite with Dual Distinct Mechanophores. Journal of the American Chemical Society, 141(5), 1898-1902. https://doi.org/10.1021/jacs.8b13310

Sweedler, J. V. (2019). The Evolving World of Scientific Publications: From Unethical Behaviors to New Mandates from Funding Agencies. Analytical Chemistry, 91(3), 1673-1674. https://doi.org/10.1021/acs.analchem.9b00332

Wang, B., Guo, F., Dong, S. H., & Zhao, H. (2019). Activation of silent biosynthetic gene clusters using transcription factor decoys. Nature chemical biology, 15(2), 111-114. https://doi.org/10.1038/s41589-018-0187-0

Lopez Hernandez, H., Takekuma, S. K., Mejia, E. B., Plantz, C. L., Sottos, N. R., Moore, J. S., & White, S. R. (2019). Processing-dependent mechanical properties of solvent cast cyclic polyphthalaldehyde. Polymer, 162, 29-34. https://doi.org/10.1016/j.polymer.2018.12.016

Jiang, S., Zhai, C., & Mei, Q. (2019). Exploiting Knowledge Graph to Improve Text-based Prediction. In Y. Song, B. Liu, K. Lee, N. Abe, C. Pu, M. Qiao, N. Ahmed, D. Kossmann, J. Saltz, J. Tang, J. He, H. Liu, ... X. Hu (Eds.), Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018 (pp. 1407-1416). [8622123] (Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BigData.2018.8622123

Morales, A., Gandhi, N., Chan, M. P. S., Lohmann, S., Sanchez, T., Brady, K. A., ... Zhai, C. (2019). Multi-Attribute Topic Feature Construction for Social Media-based Prediction. In Y. Song, B. Liu, K. Lee, N. Abe, C. Pu, M. Qiao, N. Ahmed, D. Kossmann, J. Saltz, J. Tang, J. He, H. Liu, ... X. Hu (Eds.), Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018 (pp. 1073-1078). [8622347] (Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BigData.2018.8622347

Zhang, S., Jagtap, S. S., Deewan, A., & Rao, C. V. (2019). pH selectively regulates citric acid and lipid production in Yarrowia lipolytica W29 during nitrogen-limited growth on glucose. Journal of Biotechnology, 290, 10-15. https://doi.org/10.1016/j.jbiotec.2018.10.012

South, P. F., Cavanagh, A. P., Liu, H. W., & Ort, D. R. (2019). Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field. Science, 363(6422), [eaat9077]. https://doi.org/10.1126/science.aat9077

Zhou, Y., Wei, Y., Lin, L., Xu, T., Ang, E. L., Zhao, H., ... Zhang, Y. (2019). Biochemical and structural investigation of sulfoacetaldehyde reductase from Klebsiella oxytoca. Biochemical Journal, 476(4), 733-746. https://doi.org/10.1042/BCJ20190005

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., ... Sacks, E. J. (2019). Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential. GCB Bioenergy. https://doi.org/10.1111/gcbb.12606

Pignon, C. P., Lundgren, M. R., Osborne, C. P., & Long, S. P. (2019). Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling. Journal of experimental botany, 70(1), 357-365. https://doi.org/10.1093/jxb/ery345

Cui, C., Reed, J. H., Mirts, E. N., & Lu, Y. (2019). CHAPTER 2: Design and Engineering of Heme Enzymes with O 2 -dependent Catalytic Activity. In M. Ikeda-Saito, & E. Raven (Eds.), Dioxygen-dependent Heme Enzymes (13 ed., pp. 37-62). (RSC Metallobiology; Vol. 2019-January, No. 13). Royal Society of Chemistry. https://doi.org/10.1039/9781788012911-00037

Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Lim, Y. H., Hoon, S., ... Wong, F. T. (2019). Characterization of Cas proteins for CRISPR-Cas editing in streptomycetes. Biotechnology and bioengineering. https://doi.org/10.1002/bit.27021

Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H., & Nair, S. K. (2019). Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098. Organic and Biomolecular Chemistry, 17(6), 1506-1518. https://doi.org/10.1039/c8ob02840k

Shi, S., Liang, Y., Ang, E. L., & Zhao, H. (2019). Delta integration CRISPR-Cas (Di-CRISPR) in saccharomyces cerevisiae. In Methods in Molecular Biology (pp. 73-91). (Methods in Molecular Biology; Vol. 1927). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-9142-6_6

Satyavolu, N. S. R., Loh, K. Y., Tan, L. H., & Lu, Y. (2019). Discovery of and Insights into DNA “Codes” for Tunable Morphologies of Metal Nanoparticles. Small, [1900975]. https://doi.org/10.1002/smll.201900975

Neumann, E. K., Do, T. D., Comi, T. J., & Sweedler, J. V. (2019). Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures. Angewandte Chemie - International Edition. https://doi.org/10.1002/anie.201811951

Orr, J. S., Christensen, D. G., Wolfe, A. J., & Rao, C. V. (2019). Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the tricarboxylic acid cycle and the glyoxylate shunt. Journal of bacteriology, 201(2), [e00410-18]. https://doi.org/10.1128/JB.00410-18

Kuzi, S., & Zhai, C. (2019). Figure retrieval from collections of research articles. In N. Fuhr, L. Azzopardi, B. Stein, C. Hauff, P. Mayr, & D. Hiemstra (Eds.), Advances in Information Retrieval - 41st European Conference on IR Research, ECIR 2019, Proceedings (pp. 696-710). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11437 LNCS). Springer-Verlag. https://doi.org/10.1007/978-3-030-15712-8_45

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., ... Sacks, E. J. (2019). Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America. GCB Bioenergy. https://doi.org/10.1111/gcbb.12620

Roy, J., Dibaeinia, P., Fan, T. M., Sinha, S., & Das, A. (2019). Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells. Journal of Lipid Research, 60(2), 375-387. https://doi.org/10.1194/jlr.M088559

Kim, G., Lau, V. M., Halmes, A. J., Oelze, M. L., Moore, J. S., & Li, K. C. (2019). High-intensity focused ultrasound-induced mechanochemical transduction in synthetic elastomers. Proceedings of the National Academy of Sciences of the United States of America, 116(21), 10214-10222. https://doi.org/10.1073/pnas.1901047116

Patterson, A. E., Pereira, T. R., Allison, J., & Messimer, S. L. (2019). IZOD impact properties of full-density fused deposition modeling polymer materials with respect to raster angle and print orientation. Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science. https://doi.org/10.1177/0954406219840385

Santu, S. K. K., Li, L., Park, D. H., Chang, Y., & Zhai, C. (2019). Modeling the influence of popular trending events on user search behavior. In 26th International World Wide Web Conference 2017, WWW 2017 Companion (pp. 535-544). International World Wide Web Conferences Steering Committee. https://doi.org/10.1145/3041021.3054188

Herber, D. R., & Allison, J. (2019). Nested and simultaneous solution strategies for general combined plant and control design problems. Journal of Mechanical Design, Transactions of the ASME, 141(1), [011402]. https://doi.org/10.1115/1.4040705

Nakka, Y. K., Chung, S. J., Allison, J., Aldrich, J. B., & Alvarez-Salazar, O. S. (2019). Nonlinear attitude control of a spacecraft with distributed actuation of solar arrays. Journal of Guidance, Control, and Dynamics, 42(3), 458-475. https://doi.org/10.2514/1.G003478

Liu, X., Zhai, C., Han, W., & Gungor, O. (2019). Numerical facet range partition: Evaluation metric and methods. In 26th International World Wide Web Conference 2017, WWW 2017 Companion (pp. 662-671). (26th International World Wide Web Conference 2017, WWW 2017 Companion). International World Wide Web Conferences Steering Committee. https://doi.org/10.1145/3041021.3054195

Robertson, L. A., Li, Z., Cao, Y., Shkrob, I. A., Tyagi, M., Smith, K. C., ... Z, Y. (2019). Observation of Microheterogeneity in Highly Concentrated Nonaqueous Electrolyte Solutions. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.9b02323

Taylor, S. H., & Long, S. P. (2019). Phenotyping photosynthesis on the limit - a critical examination of RACiR. The New phytologist, 221(2), 621-624. https://doi.org/10.1111/nph.15382

Kromdijk, J., Głowacka, K., & Long, S. P. (2019). Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation. Photosynthesis research. https://doi.org/10.1007/s11120-019-00632-x

Lee, Y. H., Schuh, J. K., Ewoldt, R. H., & Allison, J. (Accepted/In press). Simultaneous design of non-Newtonian lubricant and surface texture using surrogate-based multiobjective optimization. Structural and Multidisciplinary Optimization, 60(1), 99-116. https://doi.org/10.1007/s00158-019-02201-1

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., ... Erdman, J. W. (2019). 13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study. Nutrition Research, 61, 102-108. https://doi.org/10.1016/j.nutres.2018.10.007

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., ... Sacks, E. J. (2019). Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis. GCB Bioenergy. https://doi.org/10.1111/gcbb.12615

Sabuncu, S., Reed, J. H., Lu, Y., & Moënne-Loccoz, P. (2018). Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle. Journal of the American Chemical Society, 140(50), 17389-17393. https://doi.org/10.1021/jacs.8b11037

Yang, Z., Loh, K. Y., Chu, Y. T., Feng, R., Satyavolu, N. S. R., Xiong, M., ... Lu, Y. (2018). Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles. Journal of the American Chemical Society, 140(50), 17656-17665. https://doi.org/10.1021/jacs.8b09867

Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., ... Rodriguez-Zas, S. L. (2018). Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia. Frontiers in Systems Neuroscience, 12, [63]. https://doi.org/10.3389/fnsys.2018.00063

Ravanmehr, V., Puleo, G. J., Bolouki, S., & Milenkovic, O. (2018). Paired threshold graphs. Discrete Applied Mathematics, 250, 291-308. https://doi.org/10.1016/j.dam.2018.05.008

Singh, R. K., Singh, R., Sivakumar, D., Kondaveeti, S., Kim, T., Li, J., ... Lee, J. K. (2018). Insights into Cell-Free Conversion of CO 2 to Chemicals by a Multienzyme Cascade Reaction ACS Catalysis, 8(12), 11085-11093. https://doi.org/10.1021/acscatal.8b02646

Ou, Z., Song, X., Huang, W., Jiang, X., Qu, S., Wang, Q., ... Chen, Q. (2018). Colloidal Metal-Organic Framework Hexapods Prepared from Postsynthesis Etching with Enhanced Catalytic Activity and Rollable Packing. ACS Applied Materials and Interfaces, 10(48), 40990-40995. https://doi.org/10.1021/acsami.8b17477

Seo, S., Chang, T. W., & Liu, G. L. (2018). 3D Plasmon Coupling Assisted Sers on Nanoparticle-Nanocup Array Hybrids. Scientific Reports, 8(1), [3002]. https://doi.org/10.1038/s41598-018-19256-7

Tabe-Bordbar, S., Emad, A., Zhao, S. D., & Sinha, S. (2018). A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. Scientific Reports, 8(1), [6620]. https://doi.org/10.1038/s41598-018-24937-4

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., ... Adams, M. WW. (2018). A new era for electron bifurcation. Current Opinion in Chemical Biology, 47, 32-38. https://doi.org/10.1016/j.cbpa.2018.07.026

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R., & Bernacchi, C. (2018). Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO 2 concentrations Plant Cell and Environment, 41(12), 2806-2820. https://doi.org/10.1111/pce.13410

Albanna, A., Sim, M., Hoskisson, P. A., Gillespie, C., Rao, C. V., & Aldridge, P. D. (2018). Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences. Scientific Reports, 8(1), [16705]. https://doi.org/10.1038/s41598-018-35005-2

Adami, G. R., Tangney, C. C., Tang, J. L., Zhou, Y., Ghaffari, S., Naqib, A., ... Schwartz, J. L. (2018). Effects of green tea on miRNA and microbiome of oral epithelium. Scientific Reports, 8(1), [5873]. https://doi.org/10.1038/s41598-018-22994-3

Tapsin, S., Sun, M., Shen, Y., Zhang, H., Lim, X. N., Susanto, T. T., ... Wan, Y. (2018). Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes. Nature communications, 9(1), [1289]. https://doi.org/10.1038/s41467-018-03675-1

Lane, S., Xu, H., Oh, E. J., Kim, H., Lesmana, A., Jeong, D., ... Kim, S. R. (2018). Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae. Scientific Reports, 8(1), [2613]. https://doi.org/10.1038/s41598-018-20804-4

Liu, D., Wei, Y., Liu, X., Zhou, Y., Jiang, L., Yin, J., ... Zhang, Y. (2018). Indoleacetate decarboxylase is a glycyl radical enzyme catalysing the formation of malodorant skatole. Nature communications, 9(1), [4224]. https://doi.org/10.1038/s41467-018-06627-x

You, S., Tu, H., Chaney, E. J., Sun, Y., Zhao, Y., Bower, A. J., ... Boppart, S. A. (2018). Intravital imaging by simultaneous label-free autofluorescence-multiharmonic microscopy. Nature communications, 9(1), [2125]. https://doi.org/10.1038/s41467-018-04470-8

South, P. F., Cavanagh, A. P., Lopez-Calcagno, P. E., Raines, C. A., & Ort, D. R. (2018). Optimizing photorespiration for improved crop productivity. Journal of Integrative Plant Biology, 60(12), 1217-1230. https://doi.org/10.1111/jipb.12709

Głowacka, K., Kromdijk, J., Kucera, K., Xie, J., Cavanagh, A. P., Leonelli, L., ... Long, S. P. (2018). Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop. Nature communications, 9(1), [868]. https://doi.org/10.1038/s41467-018-03231-x

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Lian, J., Bao, Z., Hu, S., & Zhao, H. (2018). Engineered CRISPR/Cas9 system for multiplex genome engineering of polyploid industrial yeast strains. Biotechnology and bioengineering, 115(6), 1630-1635. https://doi.org/10.1002/bit.26569

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Erratum: Farming with crops and rocks to address global climate, food and soil security (Nature Plants (2018), DOI: 10.1038/s41477-018-0108-y). Nature Plants, 4(6). https://doi.org/10.1038/s41477-018-0162-5

HamediRad, M., Lian, J., Li, H., & Zhao, H. (2018). RNAi assisted genome evolution unveils yeast mutants with improved xylose utilization. Biotechnology and bioengineering, 115(6), 1552-1560. https://doi.org/10.1002/bit.26570

Kim, J. S., Daum, M. A., Jin, Y-S., & Miller, M. J. (2018). Yeast derived lysA2 can control bacterial contamination in ethanol fermentation. Viruses, 10(6), [281]. https://doi.org/10.3390/v10060281

Iritani, K., Ikeda, M., Yang, A., Tahara, K., Anzai, M., Hirose, K., ... Tobe, Y. (2018). Electrostatically Driven Guest Binding in a Self-Assembled Porous Network at the Liquid/Solid Interface. Langmuir, 34(21), 6036-6045. https://doi.org/10.1021/acs.langmuir.8b00699

Montoto, E. C., Cao, Y., Hernández-Burgos, K., Sevov, C. S., Braten, M. N., Helms, B. A., ... Rodríguez-López, J. (2018). Effect of the Backbone Tether on the Electrochemical Properties of Soluble Cyclopropenium Redox-Active Polymers. Macromolecules, 51(10), 3539-3546. https://doi.org/10.1021/acs.macromol.8b00574

Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., ... Sweedler, J. V. (2018). Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins. ChemPhysChem, 19(10), 1180-1191. https://doi.org/10.1002/cphc.201701364

Checco, J. W., Zhang, G., Yuan, W. D., Yu, K., Yin, S. Y., Roberts-Galbraith, R. H., ... Sweedler, J. V. (2018). Molecular and Physiological Characterization of a Receptor for d -Amino Acid-Containing Neuropeptides. ACS chemical biology, 13(5), 1343-1352. https://doi.org/10.1021/acschembio.8b00167

Tang, Q., Lu, T., & Liu, S. J. (2018). Engineering the bacterium Comamonas testosteroni CNB-1: Plasmid curing and genetic manipulation. Biochemical Engineering Journal, 133, 74-82. https://doi.org/10.1016/j.bej.2018.01.030

Anapindi, K. D. B., Romanova, E. V., Southey, B. R., & Sweedler, J. V. (2018). Peptide identifications and false discovery rates using different mass spectrometry platforms. Talanta, 182, 456-463. https://doi.org/10.1016/j.talanta.2018.01.062

Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., ... Jin, Y-S. (2018). Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass. Biotechnology for Biofuels, 11(1), [140]. https://doi.org/10.1186/s13068-018-1135-7

Robertson, I. D., Yourdkhani, M., Centellas, P. J., Aw, J. E., Ivanoff, D. G., Goli, E., ... White, S. R. (2018). Rapid energy-efficient manufacturing of polymers and composites via frontal polymerization. Nature, 557(7704), 223-227. https://doi.org/10.1038/s41586-018-0054-x

Adil, M. M., Gaj, T., Rao, A. T., Kulkarni, R. U., Fuentes, C. M., Ramadoss, G. N., ... Schaffer, D. V. (2018). hPSC-Derived Striatal Cells Generated Using a Scalable 3D Hydrogel Promote Recovery in a Huntington Disease Mouse Model. Stem Cell Reports, 10(5), 1481-1491. https://doi.org/10.1016/j.stemcr.2018.03.007

Moneypenny, T. P., Yang, A., Walter, N. P., Woods, T. J., Gray, D. L., Zhang, Y., & Moore, J. S. (2018). Product Distribution from Precursor Bite Angle Variation in Multitopic Alkyne Metathesis: Evidence for a Putative Kinetic Bottleneck. Journal of the American Chemical Society, 140(17), 5825-5833. https://doi.org/10.1021/jacs.8b02184

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H., & Jin, Y-S. (2018). A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii. Applied and Environmental Microbiology, 84(10), [e02858-17]. https://doi.org/10.1128/AEM.02858-17

Sweedler, J. V. (2018). A Resource for Our Reagents: ACS Reagent Chemicals. Analytical Chemistry, 90(9). https://doi.org/10.1021/acs.analchem.8b01729

Li, L., Andrén, P. E., & Sweedler, J. V. (2018). Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS. Journal of the American Society for Mass Spectrometry, 29(5), 801-806. https://doi.org/10.1007/s13361-018-1939-5

Milenkovic, O., Gabrys, R., Kiah, H. M., & Yazdi, S. M. H. T. (2018). Exabytes in a Test Tube: With the right coding, DNA could archive our entire civilization. IEEE Spectrum, 55(5), 40-45. https://doi.org/10.1109/MSPEC.2018.8352574

Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., ... Sweedler, J. V. (2018). Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry. Journal of the American Society for Mass Spectrometry, 29(5), 923-934. https://doi.org/10.1007/s13361-018-1898-x

Dunham, S. J. B., Ellis, J. F., Baig, N. F., Morales-Soto, N., Cao, T., Shrout, J. D., ... Sweedler, J. V. (2018). Quantitative SIMS Imaging of Agar-Based Microbial Communities. Analytical chemistry, 90(9), 5654-5663. https://doi.org/10.1021/acs.analchem.7b05180

Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., ... Murphy, D. (2018). The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system. Neurobiology of Aging, 65, 178-191. https://doi.org/10.1016/j.neurobiolaging.2018.01.008

De Souza, A. P., & Long, S. P. (2018). Toward improving photosynthesis in cassava: Characterizing photosynthetic limitations in four current African cultivars. Food and Energy Security, 7(2), [e00130]. https://doi.org/10.1002/fes3.130

Goli, E., Robertson, I. D., Geubelle, P. H., & Moore, J. S. (2018). Frontal Polymerization of Dicyclopentadiene: A Numerical Study. Journal of Physical Chemistry B, 122(16), 4583-4591. https://doi.org/10.1021/acs.jpcb.7b12316

Yun, E. J., Lee, J., Kim, D. H., Kim, J., Kim, S., Jin, Y-S., & Kim, K. H. (2018). Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica. Journal of Biotechnology, 272-273, 7-13. https://doi.org/10.1016/j.jbiotec.2018.02.011

Limsakul, P., Peng, Q., Wu, Y., Allen, M. E., Liang, J., Remacle, A. G., ... Wang, Y. (2018). Directed Evolution to Engineer Monobody for FRET Biosensor Assembly and Imaging at Live-Cell Surface. Cell chemical biology, 25(4), 370-379.e4. https://doi.org/10.1016/j.chembiol.2018.01.002

Sung, J., Robb, M. J., White, S. R., Moore, J. S., & Sottos, N. R. (2018). Interfacial mechanophore activation using laser-induced stress waves. Journal of the American Chemical Society, 140(15), 5000-5003. https://doi.org/10.1021/jacs.8b01427

Yang, N., Anapindi, K. D. B., Rubakhin, S., Wei, P., Yu, Q., Li, L., ... Sweedler, J. V. (2018). Neuropeptidomics of the Rat Habenular Nuclei. Journal of Proteome Research, 17(4), 1463-1473. https://doi.org/10.1021/acs.jproteome.7b00811

Sun, H., Zhang, H., Ang, E. L., & Zhao, H. (2018). Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates. Bioorganic and Medicinal Chemistry, 26(7), 1275-1284. https://doi.org/10.1016/j.bmc.2017.06.043

Gabrys, R., Yaakobi, E., & Milenkovic, O. (2018). Codes in the Damerau Distance for Deletion and Adjacent Transposition Correction. IEEE Transactions on Information Theory, 64(4), 2550-2570. https://doi.org/10.1109/TIT.2017.2778143

Wei, Y., Ang, E. L., & Zhao, H. (2018). Recent developments in the application of P450 based biocatalysts. Current Opinion in Chemical Biology, 43, 1-7. https://doi.org/10.1016/j.cbpa.2017.08.006

Sekerak, N. M., Hutchins, K. M., Luo, B., Kang, J. G., Braun, P. V., Chen, Q., & Moore, J. S. (2018). Size control of cross-linked carboxy-functionalized polystyrene particles: Four orders of magnitude of dimensional versatility. European Polymer Journal, 101, 202-210. https://doi.org/10.1016/j.eurpolymj.2018.01.028

Baran, M. J., Braten, M. N., Montoto, E. C., Gossage, Z. T., Ma, L., Chénard, E., ... Helms, B. A. (Accepted/In press). Designing Redox-Active Oligomers for Crossover-Free, Non-Aqueous Redox-Flow Batteries with High Volumetric Energy Density. Chemistry of Materials. https://doi.org/10.1021/acs.chemmater.8b01318

Hackett, L. P., Li, W., Ameen, A., Goddard, L. L., & Liu, G. L. (2018). Plasmonic Metal-Insulator-Metal Capped Polymer Nanopillars for SERS Analysis of Protein-Protein Interactions. Journal of Physical Chemistry C, 122(11), 6255-6266. https://doi.org/10.1021/acs.jpcc.7b08656

Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., ... Kelleher, N. L. (2018). Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains. Analytical chemistry, 90(6), 3802-3810. https://doi.org/10.1021/acs.analchem.7b04108

Eriksen, D. T., Chao, R., & Zhao, H. (2018). Applying advanced dna assembly methods to generate pathway libraries. In Synthetic Biology: Parts, Devices and Applications (pp. 331-347). Wiley-VCH Verlag. https://doi.org/10.1002/9783527688104.ch16

Ravanmehr, V., Kim, M., Wang, Z., & Milenkovic, O. (2018). ChIPWig: A random access-enabling lossless and lossy compression method for ChIP-seq data. Bioinformatics, 34(6), 911-919. https://doi.org/10.1093/bioinformatics/btx685

Lu, X., Katz, J. S., Schmitt, A. K., & Moore, J. S. (2018). A Robust Oil-in-Oil Emulsion for the Nonaqueous Encapsulation of Hydrophilic Payloads. Journal of the American Chemical Society, 140(10), 3619-3625. https://doi.org/10.1021/jacs.7b11847

Cepeda-Plaza, M., McGhee, C. E., & Lu, Y. (2018). Evidence of a General Acid-Base Catalysis Mechanism in the 8-17 DNAzyme. Biochemistry, 57(9), 1517-1522. https://doi.org/10.1021/acs.biochem.7b01096

Sweedler, J. V. (2018). Who Are Your Coauthors? Make Sure to Follow Appropriate Practices. Analytical chemistry, 90(5), 2977-2978. https://doi.org/10.1021/acs.analchem.8b00785

Wang, Y., Ren, H., & Zhao, H. (2018). Expanding the boundary of biocatalysis: design and optimization of in vitro tandem catalytic reactions for biochemical production. Critical Reviews in Biochemistry and Molecular Biology, 53(2), 115-129. https://doi.org/10.1080/10409238.2018.1431201

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Farming with crops and rocks to address global climate, food and soil security /631/449 /706/1143 /704/47 /704/106 perspective. Nature Plants, 4(3), 138-147. https://doi.org/10.1038/s41477-018-0108-y

Hackett, L. P., Ameen, A., Li, W., Dar, F. K., Goddard, L. L., & Liu, G. L. (2018). Spectrometer-Free Plasmonic Biosensing with Metal-Insulator-Metal Nanocup Arrays. ACS Sensors, 3(2), 290-298. https://doi.org/10.1021/acssensors.7b00878

Sweedler, J. V. (2018). The ACS Measurement Journals, the Analytical Division, and Pittcon 2018: A Busy Four Days. Analytical chemistry, 90(4). https://doi.org/10.1021/acs.analchem.8b00575

Blanchard, A. E., Liao, C., & Lu, T. (2018). Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch. Biophysical journal, 114(3), 737-746. https://doi.org/10.1016/j.bpj.2017.12.010

Chang, Y., & Zhai, C. (2018). Welcome by the general chairs. WSDM 2018 - Proceedings of the 11th ACM International Conference on Web Search and Data Mining, 2018-Febuary, iii.

Kumar, D., Long, S. P., & Singh, V. (2018). Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation. GCB Bioenergy, 10(2), 92-107. https://doi.org/10.1111/gcbb.12478

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B., & Ort, D. R. (2018). Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis. Plant physiology, 176(2), 1215-1232. https://doi.org/10.1104/pp.17.01401

Rao, C. V. (2018). Sparsity of Linear Discrete-Time Optimal Control Problems with $l-1$ Objectives. IEEE Transactions on Automatic Control, 63(2), 513-517. [7993042]. https://doi.org/10.1109/TAC.2017.2732286

Slattery, R. A., Walker, B. J., Weber, A. P. M., & Ort, D. R. (2018). The impacts of fluctuating light on crop performance. Plant physiology, 176(2), 990-1003. https://doi.org/10.1104/pp.17.01234

Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., ... Sohn, J. H. (2018). Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus. Journal of Biotechnology, 266, 27-33. https://doi.org/10.1016/j.jbiotec.2017.12.001

Qi, M., Philip, M. C., Yang, N., & Sweedler, J. V. (2018). Single Cell Neurometabolomics. ACS Chemical Neuroscience, 9(1), 40-50. https://doi.org/10.1021/acschemneuro.7b00304

Zhao, J., Gao, J., Xue, W., Di, Z., Xing, H., Lu, Y., & Li, L. (2018). Upconversion Luminescence-Activated DNA Nanodevice for ATP Sensing in Living Cells. Journal of the American Chemical Society, 140(2), 578-581. https://doi.org/10.1021/jacs.7b11161

Feinberg, A. M., Hernandez, H. L., Plantz, C. L., Mejia, E. B., Sottos, N. R., White, S. R., & Moore, J. S. (2018). Cyclic Poly(phthalaldehyde): Thermoforming a Bulk Transient Material. ACS Macro Letters, 7(1), 47-52. https://doi.org/10.1021/acsmacrolett.7b00769

Lourentzou, I., Morales, A., & Zhai, C. (2018). Text-based geolocation prediction of social media users with neural networks. In Z. Obradovic, R. Baeza-Yates, J. Kepner, R. Nambiar, C. Wang, M. Toyoda, T. Suzumura, X. Hu, A. Cuzzocrea, R. Baeza-Yates, J. Tang, H. Zang, J-Y. Nie, ... R. Ghosh (Eds.), Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017 (pp. 696-705). (Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017; Vol. 2018-January). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BigData.2017.8257985

Seo, S. O., Lu, T., Jin, Y-S., & Blaschek, H-P. M. (2018). Development of an oxygen-independent flavin mononucleotide-based fluorescent reporter system in Clostridium beijerinckii and its potential applications. Journal of Biotechnology, 265, 119-126. https://doi.org/10.1016/j.jbiotec.2017.11.003

Tang, S., Tang, L., Lu, X., Liu, H., & Moore, J. S. (2018). Programmable Payload Release from Transient Polymer Microcapsules Triggered by a Specific Ion Coactivation Effect. Journal of the American Chemical Society, 140(1), 94-97. https://doi.org/10.1021/jacs.7b11022

Lopez Hernandez, H., Lee, O. P., Possanza, C., Kaitz, J. A., Park, C. W., Plantz, C. L., ... White, S. R. (Accepted/In press). Accelerated Thermal Depolymerization of Cyclic Polyphthalaldehyde with a Polymeric Thermoacid Generator. Macromolecular Rapid Communications. https://doi.org/10.1002/marc.201800046

Sun, H., Zhao, H., & Ang, E. L. (2018). A coupled chlorinase-fluorinase system with a high efficiency of trans -halogenation and a shared substrate tolerance. Chemical Communications, 54(68), 9458-9461. https://doi.org/10.1039/c8cc04436h

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V., & Shen, M. (2018). A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes. Chemical Science, 9(22), 4937-4941. https://doi.org/10.1039/c8sc01131a

Guo, T., Lohan, D. J., Allison, J., Cang, R., & Ren, Y. (2018). An indirect design representation for topology optimization using variational autoencoder and style transfer. In AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials (210049 ed.). (AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference, 2018; No. 210049). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2018-0804

Checco, J. W., Zhang, G., Yuan, W. D., Le, Z. W., Jing, J., & Sweedler, J. V. (2018). Aplysia allatotropin-related peptide and its newly identified D-amino acid-containing epimer both activate a receptor and a neuronal target. Journal of Biological Chemistry, 293(43), 16862-16873. https://doi.org/10.1074/jbc.RA118.004367

Herber, D. R., & Allison, J. (2018). A problem class with combined architecture, plant, and control design applied to vehicle suspensions. In 44th Design Automation Conference (Vol. 2A-2018). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2018-86213

Lin, C., Herber, D. R., Vedant, V., Lee, Y. H., Ghosh, A. R. M., Ewoldt, R. H., & Allison, J. (2018). Attitude control system complexity reduction via tailored viscoelastic damping co-design. In C. A. H. Walker (Ed.), Guidance, navigation, and control, 2018 (pp. 731-743). (Advances in the Astronautical Sciences; Vol. 164). Univelt Inc..

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y-S., Blaschek, H-P. M., & Wang, Y. (2018). Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example. In Methods in Molecular Biology (pp. 297-325). (Methods in Molecular Biology; Vol. 1772). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7795-6_17

LeBauer, D. S., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P., & Dietze, M. C. (2018). BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production. GCB Bioenergy, 10(1), 61-71. https://doi.org/10.1111/gcbb.12420

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L., & Sweedler, J. V. (2018). Bioinformatics for prohormone and neuropeptide discovery. In Methods in Molecular Biology (pp. 71-96). (Methods in Molecular Biology; Vol. 1719). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7537-2_5

Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E., & Singh, V. (Accepted/In press). Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production. JAOCS, Journal of the American Oil Chemists' Society. https://doi.org/10.1002/aocs.12070

Hu, Y., Ameen, A., Hsiao, A., & Liu, G. L. (2018). Colorimetric imaging of layer-by-layer molecular deposition on nanoplasmonic lycurgus cup array. Sensors and Actuators, B: Chemical, 254, 827-833. https://doi.org/10.1016/j.snb.2017.07.039

Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T., & Sweedler, J. V. (2018). Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit. Physical Chemistry Chemical Physics, 20(34), 22047-22057. https://doi.org/10.1039/c8cp03661f

Weir, N. A., & Alleyne, A. G. (2018). Controller design for two-input single-output systems exploiting plant/controller alignment. In Advances in Control Design Methods; Advances in Nonlinear Control; Advances in Robotics; Assistive and Rehabilitation Robotics; Automotive Dynamics and Emerging Powertrain Technologies; Automotive Systems; Bio Engineering Applications; Bio-Mechatronics and Physical Human Robot Interaction; Biomedical and Neural Systems; Biomedical and Neural Systems Modeling, Diagnostics, and Healthcare (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 1). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9182

Tasan, I., Sustackova, G., Zhang, L., Kim, J., Sivaguru, M., HamediRad, M., ... Zhao, H. (2018). CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci. Nucleic acids research, 46(17), [e100]. https://doi.org/10.1093/nar/gky501

Jayakody, L. N., Liu, J. J., Yun, E. J., Turner, T. L., Oh, E. J., & Jin, Y-S. (Accepted/In press). Direct conversion of cellulose into ethanol and ethyl-β-d-glucoside via engineered Saccharomyces cerevisiae. Biotechnology and Bioengineering. https://doi.org/10.1002/bit.26799

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C., & Jin, Y-S. (2018). Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals. In Advances in Biochemical Engineering/Biotechnology (pp. 175-215). (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/10_2016_22

Jayakody, L. N., Turner, T. L., Yun, E. J., Kong, I. I., Liu, J. J., & Jin, Y-S. (Accepted/In press). Expression of Gre2p improves tolerance of engineered xylose-fermenting Saccharomyces cerevisiae to glycolaldehyde under xylose metabolism. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-018-9216-x

Tannous, P. J., & Alleyne, A. G. (2018). Fault detection and isolation for complex thermal management systems. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9132

Goli, E., Robertson, I. D., Agarwal, H., Pruitt, E. L., Grolman, J. M., Geubelle, P. H., & Moore, J. S. (Accepted/In press). Frontal polymerization accelerated by continuous conductive elements. Journal of Applied Polymer Science, [47418]. https://doi.org/10.1002/app.47418

Lloyd, E. M., Lopez Hernandez, H., Feinberg, A. M., Yourdkhani, M., Zen, E. K., Mejia, E. B., ... White, S. R. (Accepted/In press). Fully Recyclable Metastable Polymers and Composites. Chemistry of Materials. https://doi.org/10.1021/acs.chemmater.8b03585

Docimo, D. J., Pangborn, H. C., & Alleyne, A. G. (2018). Hierarchical control for electro-thermal power management of an electric vehicle powertrain. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9215

Rasmussen, B. P., Price, C., Koeln, J., Keating, B., & Alleyne, A. G. (2018). HVAC system modeling and control: Vapor compression system modeling and control. In Advances in Industrial Control (9783319684611 ed., pp. 73-103). (Advances in Industrial Control; No. 9783319684611). Springer International Publishing. https://doi.org/10.1007/978-3-319-68462-8_4

Gossage, Z. T., Hernández-Burgos, K., Moore, J. S., & Rodriguez Lopez, J. (Accepted/In press). Impact of Charge Transport Dynamics and Conditioning on Cycling Efficiency within Single Redox Active Colloids. ChemElectroChem. https://doi.org/10.1002/celc.201800736

Armstrong, A., Wagoner Johnson, A. J., & Alleyne, A. G. (2018). Improved cross-coupled iterative learning control for contouring NURBS curves. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9145

Larson, T. H., Balikian, R. J., Ruiz-Vera, U., & Ort, D. R. (2018). In-situ cassava root size measurement using ground penetrating radar (GPR). Proceedings of the Symposium on the Application of Geophyics to Engineering and Environmental Problems, SAGEEP, 2018-March.

Walukiewicz, H. E., Ordal, G. W., & Rao, C. V. (2018). In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway. In Methods in Molecular Biology (pp. 95-105). (Methods in Molecular Biology; Vol. 1729). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7577-8_10

Goswami, A., Zhai, C., & Mohapatra, P. (2018). Learning to rank and discover for E-commerce search. In P. Perner (Ed.), Machine Learning and Data Mining in Pattern Recognition - 14th International Conference, MLDM 2018, Proceedings (pp. 331-346). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 10935 LNAI). Springer-Verlag. https://doi.org/10.1007/978-3-319-96133-0_25

Patterson, A. E., & Allison, J. (2018). Manufacturability constraint formulation for design under hybrid additive-subtractive manufacturing. In 23rd Design for Manufacturing and the Life Cycle Conference; 12th International Conference on Micro- and Nanosystems (Vol. 4). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2018-85637

Liu, J., Liang, Y. J., Ren, P. L., & Gaj, T. (2018). Manufacturing and delivering genome-editing proteins. In Methods in Molecular Biology (pp. 253-273). (Methods in Molecular Biology; Vol. 1867). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-8799-3_19

Dau, H., & Milenkovic, O. (2018). Maxminsum steiner systems for access balancing in distributed storage. SIAM Journal on Discrete Mathematics, 32(3), 1644-1671. https://doi.org/10.1137/17M1143964

Kim, D. H., Kim, I. J., Yun, E. J., Kwak, S., Jin, Y-S., & Kim, K. H. (Accepted/In press). Metabolic engineering of Saccharomyces cerevisiae by using the CRISPR-Cas9 system for enhanced fatty acid production. Process Biochemistry. https://doi.org/10.1016/j.procbio.2018.07.011

Schultz, C., Lian, J., & Zhao, H. (Accepted/In press). Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion. Methods in Enzymology. https://doi.org/10.1016/bs.mie.2018.04.010

Peng, J., Milenkovic, O., & Ochoa-Alvarez, I. (2018). METHCOMP: A special purpose compression platform for DNA methylation data. Bioinformatics, 34(15), 2654-2656. https://doi.org/10.1093/bioinformatics/bty143

Jagtap, S. S., & Rao, C. V. (Accepted/In press). Microbial conversion of xylose into useful bioproducts. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-018-9294-9

Angatkina, O., & Alleyne, A. G. (2018). Model predictive control of a pumped two-phase cooling system with microchannel heat exchangers. In Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems (ASME 2018 Dynamic Systems and Control Conference, DSCC 2018; Vol. 2). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DSCC2018-9143

Koeln, J., Keating, B., Alleyne, A. G., Price, C., & Rasmussen, B. P. (2018). Multi-zone temperature modeling and control. In Advances in Industrial Control (9783319684611 ed., pp. 139-166). (Advances in Industrial Control; No. 9783319684611). Springer International Publishing. https://doi.org/10.1007/978-3-319-68462-8_6

Tai, H. C., Checco, J. W., & Sweedler, J. V. (2018). Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS. In Methods in Molecular Biology (pp. 107-118). (Methods in Molecular Biology; Vol. 1719). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7537-2_7

Peddada, S. R. T., Herber, D. R., Pangborn, H. C., Alleyne, A. G., & Allison, J. (2018). Optimal flow control and single split architecture exploration for fluid-based thermal management. In 44th Design Automation Conference (Proceedings of the ASME Design Engineering Technical Conference; Vol. 2A-2018). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC2018-86148

Garcia-Ruiz, E., HamediRad, M., & Zhao, H. (2018). Pathway design, engineering, and optimization. In Advances in Biochemical Engineering/Biotechnology (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/10_2016_12

Kong, I. I., Turner, T. L., Kim, H., Kim, S. R., & Jin, Y-S. (2018). Phenotypic evaluation and characterization of 21 industrial Saccharomyces cerevisiae yeast strains. FEMS yeast research, 18(1). https://doi.org/10.1093/femsyr/foy001

Jiang, J., Wang, X., Li, S., Ding, F., Li, N., Meng, S., ... Liu, G. L. (2018). Plasmonic nano-arrays for ultrasensitive bio-sensing. Nanophotonics, 7(9), 1517-1531. https://doi.org/10.1515/nanoph-2018-0023

Jagtap, S. S., & Rao, C. V. (2018). Production of d-arabitol from d-xylose by the oleaginous yeast Rhodosporidium toruloides IFO0880. Applied Microbiology and Biotechnology, 102(1), 143-151. https://doi.org/10.1007/s00253-017-8581-1

Li, P., He, N., & Milenkovic, O. (2018). Quadratic decomposable submodular function minimization. Advances in Neural Information Processing Systems, 2018-December, 1054-1064.

Ren, H., Biswas, S., Ho, S., van der Donk, W. A., & Zhao, H. (Accepted/In press). Rapid Discovery of Glycocins through Pathway Refactoring in Escherichia coli. ACS Chemical Biology. https://doi.org/10.1021/acschembio.8b00599

Guo, T., Herber, D. R., & Allison, J. (2018). Reducing evaluation cost for circuit synthesis using active learning. In 44th Design Automation Conference (Proceedings of the ASME Design Engineering Technical Conference; Vol. 2A-2018). American Society of Mechanical Engineers (ASME). https://doi.org/10.1115/DETC201885654

Li, P., & Milenkovic, O. (2018). Revisiting decomposable submodular function minimization with incidence relations. Advances in Neural Information Processing Systems, 2018-December, 2237-2247.

Lee, Y. H., Schuh, J. K., Ewoldt, R. H., & Allison, J. (2018). Simultaneous design of non-newtonian lubricant and surface texture using surrogate-based optimization. In AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials (210049 ed.). (AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference, 2018; No. 210049). American Institute of Aeronautics and Astronautics Inc, AIAA. https://doi.org/10.2514/6.2018-1906

Morales-Soto, N., Dunham, S. J. B., Baig, N. F., Ellis, J. F., Madukoma, C. S., Bohn, P. W., ... Shrout, J. D. (2018). Spatially dependent alkyl quinolone signaling responses to antibiotics in Pseudomonas aeruginosa swarms. Journal of Biological Chemistry, 293(24), 9544-9552. https://doi.org/10.1074/jbc.RA118.002605

Li, P., & Milenkovic, O. (2018). Submodular hypergraphs: P-Laplacians, cheeger inequalities and spectral clustering. In J. Dy, & A. Krause (Eds.), 35th International Conference on Machine Learning, ICML 2018 (Vol. 7, pp. 4690-4719). International Machine Learning Society (IMLS).

Lee, D. G., Jeon, J. M., Yang, Y. H., Jin, Y-S., & Yoon, J. J. (Accepted/In press). The pH-stat Butyric Acid Feeding Strategy Coupled with Gas-Stripping for n-Butanol Production by Clostridium beijerinckii. Waste and Biomass Valorization. https://doi.org/10.1007/s12649-018-0461-0

Goswami, A., Zhai, C., & Mohapatra, P. (2018). Towards optimization of e-commerce search and discovery. CEUR Workshop Proceedings, 2319.

Zhang, J., Xing, H., & Lu, Y. (2018). Translating molecular detections into a simple temperature test using a target-responsive smart thermometer. Chemical Science, 9(16), 3906-3910. https://doi.org/10.1039/c7sc05325h

Lane, S., Dong, J., & Jin, Y-S. (Accepted/In press). Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae. Bioresource Technology. https://doi.org/10.1016/j.biortech.2018.04.013

Huang, E. W., Wang, S., & Zhai, C. (2018). VisAGE: Integrating external knowledge into electronic medical record visualization. Pacific Symposium on Biocomputing, 0(212669), 578-589. https://doi.org/10.1142/9789813235533_0053