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Khandelwal, A., Athreya, N., Tu, M. Q., Janavicius, L. L., Yang, Z., Milenkovic, O., Leburton, J. P., Schroeder, C. M., & Li, X. (2022). Self-assembled microtubular electrodes for on-chip low-voltage electrophoretic manipulation of charged particles and macromolecules. Microsystems and Nanoengineering, 8(1), [27]. https://doi.org/10.1038/s41378-022-00354-6
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O’Shaughnessy, M. R., Schiff, D. S., Varshney, L. R., Rozell, C. J., & Davenport, M. A. (2022). What governs attitudes toward artificial intelligence adoption and governance? Science and Public Policy, [scac056]. https://doi.org/10.1093/scipol/scac056
Lalani, Z., Chu, G., Hsu, S., Kagawa, S., Xiang, M., Zaccaria, S., & El-Kebir, M. (2022). CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data. PLoS computational biology, 18(10), e1010614. https://doi.org/10.1371/journal.pcbi.1010614
Greenberg, G., & Shomorony, I. (2022). Improving bacterial genome assembly using a test of strand orientation. Bioinformatics (Oxford, England), 38(2), ii34-ii41. https://doi.org/10.1093/bioinformatics/btac516
Liu, X., & Milenkovic, O. (2022). Finding the second-best candidate under the Mallows model. Theoretical Computer Science, 929, 39-68. https://doi.org/10.1016/j.tcs.2022.06.029
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Salners, T., Curry, J. F., Hinkle, A. R., Babuska, T. F., Argibay, N., DelRio, F. W., Chandross, M., & Dahmen, K. (2022). Linking Friction Scales from Nano to Macro via Avalanches. Tribology Letters, 70(3), [82]. https://doi.org/10.1007/s11249-022-01619-x
Mysonhimer, A. R., & Holscher, H. D. (2022). Gastrointestinal Effects and Tolerance of Nondigestible Carbohydrate Consumption. Advances in Nutrition, [nmac094]. https://doi.org/10.1093/advances/nmac094
Holscher, H. D., Chumpitazi, B. P., Dahl, W. J., Fahey, G. C., Liska, D. J., Slavin, J. L., & Verbeke, K. (2022). Perspective: Assessing Tolerance to Nondigestible Carbohydrate Consumption. Advances in Nutrition, [nmac091]. https://doi.org/10.1093/advances/nmac091
McMath, A. L., Iwinski, S., Shen, S., Bost, K. F., Donovan, S. M., & Khan, N. A. (2022). Adherence to screen time and physical activity guidelines is associated with executive function in US toddlers participating in the STRONG Kids 2 birth cohort study. The Journal of Pediatrics. https://doi.org/10.1016/j.jpeds.2022.08.026
Chien, E., Tabaghi, P., & Milenkovic, O. (2022). HyperAid: Denoising in Hyperbolic Spaces for Tree-fitting and Hierarchical Clustering. In KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 201-211). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3534678.3539378
Liechty, J. M., Keck, A. S., Sloane, S., Donovan, S. M., & Fiese, B. H. (2022). Assessing Transdisciplinary Scholarly Development: A Longitudinal Mixed Method Graduate Program Evaluation. Innovative Higher Education, 47(4), 661-681. https://doi.org/10.1007/s10755-022-09593-x
Wang, X., Shih, H. Y., & Goldenfeld, N. (2022). Stochastic Model for Quasi-One-Dimensional Transitional Turbulence with Streamwise Shear Interactions. Physical review letters, 129(3), [034501]. https://doi.org/10.1103/PhysRevLett.129.034501
Zhang, C., Sashittal, P., Xiang, M., Zhang, Y., Kazi, A., & El-Kebir, M. (2022). Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses. Molecular biology and evolution, 39(7), [msac133]. https://doi.org/10.1093/molbev/msac133
Das, P., & Varshney, L. R. (2022). Explaining Artificial Intelligence Generation and Creativity: Human interpretability for novel ideas and artifacts. IEEE Signal Processing Magazine, 39(4), 85-95. https://doi.org/10.1109/MSP.2022.3141365
Naik, A., Varshney, L. R., Hassaneen, W., & Arnold, P. M. (2022). Letter: Development of Machine Learning-Based Models to Predict Treatment Response to Spinal Cord Stimulation. Neurosurgery, 91(1), e30. https://doi.org/10.1227/neu.0000000000002017
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Abolfathi, M., Shomorony, I., Vahid, A., & Jafarian, J. H. (2022). A Game-Theoretically Optimal Defense Paradigm against Traffic Analysis Attacks using Multipath Routing and Deception. In SACMAT 2022 - Proceedings of the 27th ACM Symposium on Access Control Models and Technologies (pp. 67-78). (Proceedings of ACM Symposium on Access Control Models and Technologies, SACMAT). Association for Computing Machinery. https://doi.org/10.1145/3532105.3535015
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Davis, E. C., Wang, M., & Donovan, S. M. (2022). Microbial Interrelationships across Sites of Breastfeeding Mothers and Infants at 6 Weeks Postpartum. Microorganisms, 10(6). https://doi.org/10.3390/microorganisms10061155
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Goyal, M., Serrano, G., Argemi, J., Shomorony, I., Hernaez, M., & Ochoa, I. (2022). JIND: Joint integration and discrimination for automated single-cell annotation. Bioinformatics, 38(9), 2488-2495. https://doi.org/10.1093/bioinformatics/btac140
Bhimaraju, A., Chatterjee, A., & Varshney, L. (2022). Expected Extinction Times of Epidemics with State-dependent Infectiousness. IEEE Transactions on Network Science and Engineering, 9(3), 1104-1116. https://doi.org/10.1109/TNSE.2021.3131954
Kara, A. D., Raginsky, M., & Yüksel, S. (2022). Robustness to incorrect models and data-driven learning in average-cost optimal stochastic control. Automatica, 139, [110179]. https://doi.org/10.1016/j.automatica.2022.110179
Mia, M. S., Abdelmeguid, M., & Elbanna, A. E. (2022). Spatio-Temporal Clustering of Seismicity Enabled by Off-Fault Plasticity. Geophysical Research Letters, 49(8), [e2021GL097601]. https://doi.org/10.1029/2021GL097601
Sutkus, L. T., Joung, S., Hirvonen, J., Jensen, H. M., Ouwehand, A. C., Mukherjea, R., Donovan, S. M., & Dilger, R. N. (2022). Influence of 2′-Fucosyllactose and Bifidobacterium longum Subspecies infantis Supplementation on Cognitive and Structural Brain Development in Young Pigs. Frontiers in Neuroscience, 16, [860368]. https://doi.org/10.3389/fnins.2022.860368
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Song, Z., Koyejo, O., & Zhang, J. (2022). Toward a Controllable Disentanglement Network. IEEE Transactions on Cybernetics, 52(4), 2491-2504. https://doi.org/10.1109/TCYB.2020.3000480
Oh, C., Sashittal, P., Zhou, A., Wang, L., El-Kebir, M., & Nguyen, T. H. (2022). Design of SARS-CoV-2 Variant-Specific PCR Assays Considering Regional and Temporal Characteristics. Applied and environmental microbiology, 88(7), [e0228921]. https://doi.org/10.1128/aem.02289-21
Traniello, I. M., Hamilton, A. R., Gernat, T., Cash-Ahmed, A. C., Harwood, G. P., Ray, A. M., Glavin, A., Torres, J., Goldenfeld, N., & Robinson, G. E. (2022). Context-dependent influence of threat on honey bee social network dynamics and brain gene expression. The Journal of experimental biology, 225(6). https://doi.org/10.1242/jeb.243738
Tabatabaei, S. K., Pham, B., Pan, C., Liu, J., Chandak, S., Shorkey, S. A., Hernandez, A. G., Aksimentiev, A., Chen, M., Schroeder, C. M., & Milenkovic, O. (2022). Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Neural Network Nanopore Readout Processing. Nano letters, 22(5), 1905-1914. https://doi.org/10.1021/acs.nanolett.1c04203
Ellis, J. L., Wang, M., Fu, X., Fields, C. J., Donovan, S. M., & Booth, S. L. (2022). Feeding Practice and Delivery Mode Are Determinants of Vitamin K in the Infant Gut: An Exploratory Analysis. Current Developments in Nutrition, 6(3), [nzac019]. https://doi.org/10.1093/cdn/nzac019
Moreno, L. A., Meyer, R., Donovan, S. M., Goulet, O., Haines, J., Kok, F. J., & Van't Veer, P. (2022). Perspective: Striking a Balance between Planetary and Human Health-Is There a Path Forward? Advances in Nutrition, 13(2), 355-375. https://doi.org/10.1093/advances/nmab139
Hughes, R. L., Alvarado, D. A., Swanson, K. S., & Holscher, H. D. (2022). The Prebiotic Potential of Inulin-Type Fructans: A Systematic Review. Advances in Nutrition, 13(2), 492-529. https://doi.org/10.1093/advances/nmab119
Lee, N. M., Varshney, L. R., Michelson, H. C., Goldsmith, P., & Davis, A. (2022). Digital trust substitution technologies to support smallholder livelihoods in Sub-Saharan Africa. Global Food Security, 32, [100604]. https://doi.org/10.1016/j.gfs.2021.100604
Shen, H., Huerta, E. A., O'Shea, E., Kumar, P., & Zhao, Z. (2022). Statistically-informed deep learning for gravitational wave parameter estimation. Machine Learning: Science and Technology, 3(1), [015007]. https://doi.org/10.1088/2632-2153/ac3843
Shomorony, I., & Heckel, R. (2022). Information-Theoretic Foundations of DNA Data Storage. Foundations and Trends in Communications and Information Theory, 19(1), 1-106. https://doi.org/10.1561/0100000117
Lundquist, A., McBride, B. A., Donovan, S. M., & Wszalek, M. (2022). Father support for breastfeeding mothers who plan to utilize childcare: A qualitative look at Mothers’ perspectives. Appetite, 169, [105854]. https://doi.org/10.1016/j.appet.2021.105854
Kern, J., Dupraz, E., Aïssa-El-Bey, A., Varshney, L. R., & Leduc-Primeau, F. (2022). Optimizing the Energy Efficiency of Unreliable Memories for Quantized Kalman Filtering. Sensors, 22(3), [853]. https://doi.org/10.3390/s22030853
Lehman, S. Y., Christman, L. E., Jacobs, D. T., Johnson, N. S. D. E. F., Palchoudhuri, P., Tieman, C. E., Vajpeyi, A., Wainwright, E. R., Walker, J. E., Wilson, I. S., LeBlanc, M., McFaul, L. W., Uhl, J. T., & Dahmen, K. A. (2022). Universal aspects of cohesion. Granular Matter, 24(1), [35]. https://doi.org/10.1007/s10035-021-01188-1
Xia, F., Allen, J., Balaprakash, P., Brettin, T., Garcia-Cardona, C., Clyde, A., Cohn, J., Doroshow, J., Duan, X., Dubinkina, V., Evrard, Y., Fan, Y. J., Gans, J., He, S., Lu, P., Maslov, S., Partin, A., Shukla, M., Stahlberg, E., ... Stevens, R. (2022). A cross-study analysis of drug response prediction in cancer cell lines. Briefings in bioinformatics, 23(1), [bbab356]. https://doi.org/10.1093/bib/bbab356
El-Kebir, M., Morris, Q., Oesper, L., & Sahinalp, S. C. (2022). Emerging Topics in Cancer Evolution. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 27, 397-401.
Daniels, V. C., Monaco, M. H., Wang, M., Hirvonen, J., Jensen, H. M., Ouwehand, A. C., Mukherjea, R., Dilger, R. N., & Donovan, S. M. (2022). Evaluation of 2’-fucosyllactose and bifidobacterium longum subspecies infantis on growth, organ weights, and intestinal development of piglets. Nutrients, 14(1), [199]. https://doi.org/10.3390/nu14010199
Liu, J. M., Solem, C., Lu, T., & Jensen, P. R. (2022). Harnessing lactic acid bacteria in synthetic microbial consortia. Trends in Biotechnology, 40(1), 8-11. https://doi.org/10.1016/j.tibtech.2021.09.002
Levick, K., Heckel, R., & Shomorony, I. (2022). Achieving the Capacity of a DNA Storage Channel with Linear Coding Schemes. In 2022 56th Annual Conference on Information Sciences and Systems, CISS 2022 (pp. 218-223). (2022 56th Annual Conference on Information Sciences and Systems, CISS 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CISS53076.2022.9751151
Xie, Y., Wang, D., Chen, P. Y., Xiong, J., Liu, S., & Koyejo, S. (2022). A Word is Worth A Thousand Dollars: Adversarial Attack on Tweets Fools Stock Prediction. In NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference (pp. 587-599). (NAACL 2022 - 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Proceedings of the Conference). Association for Computational Linguistics (ACL).
Pan, C., Gabrys, R., Liu, X., Colbourn, C., & Milenkovic, O. (2022). Balanced and Swap-Robust Trades for Dynamical Distributed Storage. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 2385-2390). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834794
Ravi, A. N., Vahid, A., & Shomorony, I. (2022). Capacity of the Shotgun Sequencing Channel. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 210-215). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834409
Cannavale, C. N., Mysonhimer, A. R., Bailey, M. A., Cohen, N. J., Holscher, H. D., & Khan, N. A. (Accepted/In press). Consumption of a fermented dairy beverage improves hippocampal-dependent relational memory in a randomized, controlled cross-over trial. Nutritional Neuroscience. https://doi.org/10.1080/1028415X.2022.2046963
Zhang, C., Sashittal, P., & El-Kebir, M. (2022). CORSID Enables de novo Identification of Transcription Regulatory Sequences and Genes in Coronaviruses. In I. Pe’er (Ed.), Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, Proceedings (pp. 360-362). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 13278 LNBI). Springer. https://doi.org/10.1007/978-3-031-04749-7_28
Pyrros, A., Chen, A., Rodríguez-Fernández, J. M., Borstelmann, S. M., Cole, P. A., Horowitz, J., Chung, J., Nikolaidis, P., Boddipalli, V., Siddiqui, N., Willis, M., Flanders, A. E., & Koyejo, S. (Accepted/In press). Deep Learning–Based Digitally Reconstructed Tomography of the Chest in the Evaluation of Solitary Pulmonary Nodules: A Feasibility Study. Academic Radiology. https://doi.org/10.1016/j.acra.2022.05.005
Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., Dilger, R. N., Erdman, J. W., Burd, N. A., Holscher, H. D., & Khan, N. A. (2022). Dietary lutein plus zeaxanthin and choline intake is interactively associated with cognitive flexibility in middle-adulthood in adults with overweight and obesity. Nutritional Neuroscience, 25(7), 1437-1452. https://doi.org/10.1080/1028415X.2020.1866867
Tucker, N., Sutton, B. P., Duncan, C., Lu, C., Koyejo, S., Tsung, A. J., Maksimovic, J., Ralph, T., Pieta, S. M., & Bramlet, M. T. (2022). Fully Automated Conversion Of Glioma Clinical MRI Scans Into A 3D Virtual Reality Model For Presurgical Planning. In C. R. Martin, N. Emami, M. J. Blas, & R. Rezaee (Eds.), Proceedings of the 2022 Annual Modeling and Simulation Conference, ANNSIM 2022 (pp. 392-403). (Proceedings of the 2022 Annual Modeling and Simulation Conference, ANNSIM 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.23919/ANNSIM55834.2022.9859317
Mazooji, K., Kannan, S., Noble, W. S., & Shomorony, I. (2022). Fundamental Limits of Multi-Sample Flow Graph Decomposition. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 2403-2408). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834518
Hawthorne, K. M., Castle, J., & Donovan, S. M. (2022). Meat Helps Make Every Bite Count An Ideal First Food for Infants. Nutrition Today, 57(1), 8-13. https://doi.org/10.1097/NT.0000000000000523
Markowitz, S., Snyder, C., Eldar, Y. C., & Do, M. N. (2022). Multimodal Unrolled Robust PCA for Background Foreground Separation. IEEE Transactions on Image Processing, 31, 3553-3564. https://doi.org/10.1109/TIP.2022.3172851
Saldi, N., Başar, T., & Raginsky, M. (Accepted/In press). Partially Observed Discrete-Time Risk-Sensitive Mean Field Games. Dynamic Games and Applications. https://doi.org/10.1007/s13235-022-00453-z
Bhimaraju, A., & Varshney, L. R. (2022). Scheduling Group Tests over Time. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 886-891). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834434
Marla, L., Varshney, L. R., Shah, D., Prakash, N. A., & Gale, M. E. (2022). Short and Wide Network Paths. IEEE Transactions on Network Science and Engineering, 9(2), 524-537. https://doi.org/10.1109/TNSE.2021.3123311
Rana, V., Chien, E., Peng, J., & Milenkovic, O. (Accepted/In press). Small-sample estimation of the mutational support and distribution of SARS-CoV-2. IEEE/ACM Transactions on Computational Biology and Bioinformatics. https://doi.org/10.1109/TCBB.2022.3165395
Golm, R., Nahvi, M., Gabrys, R., & Milenkovic, O. (2022). The Gapped k-Deck Problem. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 49-54). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834537
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