Cerca, J., Petersen, B., Lazaro-Guevara, J. M., Rivera-Colón, A., Birkeland, S., Vizueta, J., Li, S., Li, Q., Loureiro, J., Kosawang, C., Díaz, P. J., Rivas-Torres, G., Fernández-Mazuecos, M., Vargas, P., McCauley, R. A., Petersen, G., Santos-Bay, L., Wales, N., Catchen, J. M., ... Martin, M. D. (2022). The genomic basis of the plant island syndrome in Darwin’s giant daisies. Nature communications, 13(1), [3729]. https://doi.org/10.1038/s41467-022-31280-w
Bosch, N., Chan, A. S., Davis, J. L., Gutiérrez, R., He, J. R., Karahalios, K. G., Koyejo, O. O., Loui, M. C., Mendenhall, R., Tong, H., Varshney, L. R., & Wang, Y. (2022). Artificial Intelligence and Social Responsibility: The Roles of the University.
Rayamajhi, N., Cheng, C-H. C., & Catchen, J. M. (2022). Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki. G3 Genes|Genomes|Genetics, 12(11), [jkac192]. https://doi.org/10.1093/g3journal/jkac192
Small, C. M., Healey, H. M., Currey, M. C., Beck, E. A., Catchen, J., Lin, A. S. P., Cresko, W. A., & Bassham, S. (2022). Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes. Proceedings of the National Academy of Sciences of the United States of America, 119(26), [e2119602119]. https://doi.org/10.1073/pnas.2119602119
Yarlagadda, K., Zachwieja, A. J., de Flamingh, A., Phungviwatnikul, T., Rivera-Colón, A. G., Roseman, C., Shackelford, L., Swanson, K. S., & Malhi, R. S. (2022). Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes. Proceedings of the Royal Society B: Biological Sciences, 289(1974), [20220052]. https://doi.org/10.1098/rspb.2022.0052
Cramb, J., Ritchison, B. T., Hadden, C. S., Zhang, Q., Alarcón-Tinajero, E., Chen, X., Jones, K. C., Jones, T., Napora, K., Veres, M., & Thompson, V. D. (2022). The Changing Profile of Tenure-Track Faculty in Archaeology. Advances in Archaeological Practice, 1-11. https://doi.org/10.1017/aap.2022.8
Raglin, S. S., Kent, A. D., & Ngumbi, E. N. (2022). Herbivory Protection via Volatile Organic Compounds Is Influenced by Maize Genotype, Not Bacillus altitudinis-Enriched Bacterial Communities. Frontiers in Microbiology, 13, [826635]. https://doi.org/10.3389/fmicb.2022.826635
Severson, A. L., Byrd, B. F., Mallott, E. K., Owings, A. C., DeGiorgio, M., de Flamingh, A., Nijmeh, C., Arellano, M. V., Leventhal, A., Rosenberg, N. A., & Malhi, R. S. (2022). Ancient and modern genomics of the Ohlone Indigenous population of California. Proceedings of the National Academy of Sciences, 119(13), e2111533119. [e2111533119]. https://doi.org/10.1073/pnas.2111533119
Davis, J. L., & Krupa, K. (2022). Toward a Language of Possibility in Curation and Consultation Practices. Collections: A Journal for Museum and Archives Professionals, 18(1), 18-27. https://doi.org/10.1177/15501906211073074
Capel, S. L. R., Bouzat, J. L., Catchen, J. M., Johnson, J. A., Dunn, P. O., & Paige, K. N. (2022). Evaluating the genome-wide impacts of species translocations: the greater prairie-chicken as a case study. Conservation Genetics, 23(1), 179-191. https://doi.org/10.1007/s10592-021-01412-8
Davis, J. L. (2022). Trickster Academy. (Sun Tracks). University of Arizona Press.
Davis, J. L. (2022). "Anadromous". Humana Obscura, (4), 39. https://www.humanaobscura.com/issue-4
Potter, B. A., Chatters, J. C., Prentiss, A. M., Fiedel, S. J., Haynes, G., Kelly, R. L., Kilby, J. D., Lanoë, F., Holland-Lulewicz, J., Miller, D. S., Morrow, J. E., Perri, A. R., Rademaker, K. M., Reuther, J. D., Ritchison, B. T., Sanchez, G., Sánchez-Morales, I., Spivey-Faulkner, S. M., Tune, J. W., & Haynes, C. V. (2022). Current Understanding of the Earliest Human Occupations in the Americas: Evaluation of Becerra-Valdivia and Higham (2020). PaleoAmerica, 8(1), 62-76. https://doi.org/10.1080/20555563.2021.1978721
Chatters, J. C., Potter, B. A., Prentiss, A. M., Fiedel, S. J., Haynes, G., Kelly, R. L., Kilby, J. D., Lanoë, F., Holland-Lulewicz, J., Miller, D. S., Morrow, J. E., Perri, A. R., Rademaker, K. M., Reuther, J. D., Ritchison, B. T., Sanchez, G., Sánchez-Morales, I., Spivey-Faulkner, S. M., Tune, J. W., & Haynes, C. V. (2022). Evaluating Claims of Early Human Occupation at Chiquihuite Cave, Mexico. PaleoAmerica, 8(1), 1-16. https://doi.org/10.1080/20555563.2021.1940441
Rivera-Colón, A. G., & Catchen, J. (2022). Population Genomics Analysis with RAD, Reprised: Stacks 2. In Methods in Molecular Biology (pp. 99-149). (Methods in Molecular Biology; Vol. 2498). Humana Press Inc.. https://doi.org/10.1007/978-1-0716-2313-8_7
Witt, K. E., Yarlagadda, K., Allen, J. M., Bader, A. C., Simon, M. L., Kuehn, S. R., Swanson, K. S., Cross, T. W. L., Hedman, K. M., Ambrose, S. H., & Malhi, R. S. (2021). Author Correction: Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet (Scientific Reports, (2021), 11, 1, (3113), 10.1038/s41598-021-82362-6). Scientific reports, 11(1), [11445]. https://doi.org/10.1038/s41598-021-90889-x
Witt, K. E., Yarlagadda, K., Allen, J. M., Bader, A. C., Simon, M. L., Kuehn, S. R., Swanson, K. S., Cross, T. W. L., Hedman, K. M., Ambrose, S. H., & Malhi, R. S. (2021). Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet. Scientific reports, 11(1), [3113]. https://doi.org/10.1038/s41598-021-82362-6
Holland-Lulewicz, J., & Ritchison, B. T. (2021). How Many Dates Do I Need? Using Simulations to Determine Robust Age Estimations of Archaeological Contexts. Advances in Archaeological Practice, 9(4), 272-287. https://doi.org/10.1017/aap.2021.10
Yarlagadda, K., Razik, I., Malhi, R. S., & Carter, G. G. (2021). Social convergence of gut microbiomes in vampire bats. Biology Letters, 17(11), 20210389. [20210389]. https://doi.org/10.1098/rsbl.2021.0389
Davis, J. L., & Smalls, K. A. (2021). Dis/possession Afoot: American (Anthropological) Traditions of Anti‐Blackness and Coloniality. Journal of Linguistic Anthropology, 31(2), 275-282. https://doi.org/10.1111/jola.12327
Lesure, R. G., Sinensky, R. J., Schachner, G., Wake, T. A., & Bishop, K. J. (2021). Large-Scale Patterns in the Agricultural Demographic Transition of Mesoamerica and Southwestern North America. American Antiquity, 86(3), 593-612. https://doi.org/10.1017/aaq.2021.23
Marciniak, S., Mughal, M. R., Godfrey, L. R., Bankoff, R. J., Randrianatoandro, H., Crowley, B. E., Bergey, C. M., Muldoon, K. M., Randrianasy, J., Raharivololona, B. M., Schuster, S. C., Malhi, R. S., Yoder, A. D., Louis, E. E., Kistler, L., & Perry, G. H. (2021). Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, “subfossil” koala lemur Megaladapis edwardsi. Proceedings of the National Academy of Sciences, 118(26), [117118]. https://doi.org/10.1073/pnas.2022117118
Ngumbi, E. N., & Ugarte, C. M. (Accepted/In press). Flooding and Herbivory Interact to Alter Volatile Organic Compound Emissions in Two Maize Hybrids. Journal of Chemical Ecology, 47(7), 707-718. https://doi.org/10.1007/s10886-021-01286-7
Chang, C. H., Catchen, J., Moran, R. L., Rivera-Colón, A. G., Wang, Y. C., & Fuller, R. C. (2021). Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei). Journal of Heredity, 112(4), 357-366. https://doi.org/10.1093/jhered/esab017
Ritchison, B. T., Thompson, V. D., Lulewicz, I., Tucker, B., & Turck, J. A. (2021). Climate change, resilience, and the Native American Fisher-hunter-gatherers of the late Holocene on the Georgia coast, USA. Quaternary International, 584, 82-92. https://doi.org/10.1016/j.quaint.2020.08.030
Cerca, J., Maurstad, M. F., Rochette, N. C., Rivera-Colón, A. G., Rayamajhi, N., Catchen, J. M., & Struck, T. H. (2021). Removing the bad apples: A simple bioinformatic method to improve loci-recovery in de novo RADseq data for non-model organisms. Methods in Ecology and Evolution, 12(5), 805-817. https://doi.org/10.1111/2041-210X.13562
Capodiferro, M. R., Aram, B., Raveane, A., Rambaldi Migliore, N., Colombo, G., Ongaro, L., Rivera, J., Mendizábal, T., Hernández-Mora, I., Tribaldos, M., Perego, U. A., Li, H., Scheib, C. L., Modi, A., Gòmez-Carballa, A., Grugni, V., Lombardo, G., Hellenthal, G., Pascale, J. M., ... Achilli, A. (2021). Archaeogenomic distinctiveness of the Isthmo-Colombian area. Cell, 184(7), 1706-1723.e24. https://doi.org/10.1016/j.cell.2021.02.040
Davis, J. L., & Hall, K. (2021). Ethnography and the Shifting Semiotics of Gender and Sexuality: Practice, Ideology, Theory. In J. Angouri, & J. Baxter (Eds.), The Routledge Handbook of Language, Gender and Sexuality (pp. 93-107). (Routledge Handbooks in Applied Linguistics). Routledge. https://doi.org/10.4324/9781315514857-8
Davis, J. L. (2021). Famous Last Speakers: Celebrity and Erasure in Media Coverage of Language Endangerment. In J. Adese, & R. A. Innes (Eds.), Indigenous Celebrity: Entanglements with Fame University of Manitoba.
Schartl, M., Kneitz, S., Ormanns, J., Schmidt, C., Anderson, J. L., Amores, A., Catchen, J., Wilson, C., Geiger, D., Du, K., Garcia-Olazábal, M., Sudaram, S., Winkler, C., Hedrich, R., Warren, W. C., Walter, R., Meyer, A., & Postlethwait, J. H. (2021). The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Current Biology, 31(5), 911-922.e4. https://doi.org/10.1016/j.cub.2020.11.028
Perri, A. R., Feuerborn, T. R., Frantz, L. A. F., Larson, G., Malhi, R. S., Meltzer, D. J., & Witt, K. E. (2021). Dog domestication and the dual dispersal of people and dogs into the Americas. Proceedings of the National Academy of Sciences of the United States of America, 118(6), [e2010083118]. https://doi.org/10.1073/pnas.2010083118
Cerca, J., Colon, A. G. R., Ferreira, M. S., Ravinet, M., Nowak, M. D., Catchen, J. M., & Struck, T. H. (2021). Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species. PeerJ, 9, [e10896]. https://doi.org/10.7717/peerj.10896
de Flamingh, A., Coutu, A., Sealy, J., Chirikure, S., Bastos, A. D. S., Libanda-Mubusisi, N. M., Malhi, R. S., & Roca, A. L. (2021). Sourcing Elephant Ivory from a Sixteenth-Century Portuguese Shipwreck. Current Biology, 31(3), 621-628.e4. https://doi.org/10.1016/j.cub.2020.10.086
Rivera-Colón, A. G., Rochette, N. C., & Catchen, J. M. (2021). Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data. Molecular ecology resources, 21(2), 363-378. https://doi.org/10.1111/1755-0998.13163
Demkovich, M. R., Calla, B., Ngumbi, E., Higbee, B. S., Siegel, J. P., & Berenbaum, M. R. (2021). Differential regulation of cytochrome P450 genes associated with biosynthesis and detoxification in bifenthrin-resistant populations of navel orangewom (Amyelois transitella). PloS one, 16(1 January), [e0245803]. https://doi.org/10.1371/journal.pone.0245803
Garland, C. J., Ritchison, B. T., Tucker, B., & Thompson, V. D. (Accepted/In press). A preliminary consideration of craft production and settlement expansion on Ossabaw Island, Georgia, USA. Journal of Island and Coastal Archaeology. https://doi.org/10.1080/15564894.2021.1962436
Buonasera, T., Eerkens, J., de Flamingh, A., Engbring, L., Yip, J., Li, H., Haas, R., DiGiuseppe, D., Grant, D., Salemi, M., Nijmeh, C., Arellano, M., Leventhal, A., Phinney, B., Byrd, B. F., Malhi, R. S., & Parker, G. (2020). A comparison of proteomic, genomic, and osteological methods of archaeological sex estimation. Scientific reports, 10(1), [11897]. https://doi.org/10.1038/s41598-020-68550-w
Ritchison, B. T. (2020). Using radiocarbon data to chronologically control population density estimates derived from systematically collected intra-settlement distributional data. Radiocarbon, 62(6), 1577-1597. https://doi.org/10.1017/RDC.2020.107
Catchen, J., Amores, A., & Bassham, S. (2020). Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny. G3 (Bethesda, Md.), 10(11), 4115-4128. https://doi.org/10.1534/g3.120.401485
Yao, L., Witt, K., Li, H., Rice, J., Salinas, N. R., Martin, R. D., Huerta-Sánchez, E., & Malhi, R. S. (2020). Population genetics of wild Macaca fascicularis with low-coverage shotgun sequencing of museum specimens. American journal of physical anthropology, 173(1), 21-33. https://doi.org/10.1002/ajpa.24099
Thompson, V. D., Rick, T., Garland, C. J., Thomas, D. H., Smith, K. Y., Bergh, S., Sanger, M., Tucker, B., Lulewicz, I., Semon, A. M., Schalles, J., Hladik, C., Alexander, C., & Ritchison, B. T. (2020). Ecosystem stability and Native American oyster harvesting along the Atlantic coast of the United States. Science Advances, 6(28), [aba9652]. https://doi.org/10.1126/sciadv.aba9652
Malhi, R. S. (2020). Contributions to anti-racist science: Introduction to race, racism, and the genetic structure of human populations special issue. Human biology, 92(3), 133-134. https://doi.org/10.13110/humanbiology.92.3.01
Hudson, M., Garrison, N. A., Sterling, R., Caron, N. R., Fox, K., Yracheta, J., Anderson, J., Wilcox, P., Arbour, L., Brown, A., Taualii, M., Kukutai, T., Haring, R., Te Aika, B., Baynam, G. S., Dearden, P. K., Chagné, D., Malhi, R. S., Garba, I., ... Carroll, S. R. (2020). Rights, interests and expectations: Indigenous perspectives on unrestricted access to genomic data. Nature Reviews Genetics, 21(6), 377-384. https://doi.org/10.1038/s41576-020-0228-x
Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., ... Manica, A. (2020). Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular ecology, 29(9), 1596-1610. https://doi.org/10.1111/mec.15329
Flamingh, A., Coutu, A., Roca, A. L., & Malhi, R. S. (2020). Accurate sex identification of ancient elephant and other animal remains using low-coverage DNA shotgun sequencing data. G3: Genes, Genomes, Genetics, 10(4), 1427-1432. https://doi.org/10.1534/g3.119.400833
Campbell-Staton, S. C., Winchell, K. M., Rochette, N. C., Fredette, J., Maayan, I., Schweizer, R. M., & Catchen, J. (2020). Parallel selection on thermal physiology facilitates repeated adaptation of city lizards to urban heat islands. Nature Ecology and Evolution, 4(4), 652-658. https://doi.org/10.1038/s41559-020-1131-8
Davis, J. L. (2020). Good Neighbors and Supportive Grandfathers: Contextualizing Nonheritage Learners of Chickasaw. American Anthropologist, 122(1), 170-174. https://doi.org/10.1111/aman.13373
Moran, R. L., Catchen, J. M., & Fuller, R. C. (2020). Genomic resources for darters (Percidae: Etheostominae) provide insight into postzygotic barriers implicated in speciation. Molecular biology and evolution, 37(3), 711-719. [msz260]. https://doi.org/10.1093/molbev/msz260
Ngumbi, E. N., Hanks, L. M., Suarez, A. V., Millar, J. G., & Berenbaum, M. R. (2020). Author Correction: Factors Associated with Variation in Cuticular Hydrocarbon Profiles in the Navel Orangeworm, Amyelois transitella (Lepidoptera: Pyralidae) (Journal of Chemical Ecology, (2020), 46, 1, (40-47), 10.1007/s10886-019-01129-6). Journal of Chemical Ecology, 46(2), 232. https://doi.org/10.1007/s10886-020-01155-9
Ngumbi, E. N., Hanks, L. M., Suarez, A. V., Millar, J. G., & Berenbaum, M. R. (2020). Factors Associated with Variation in Cuticular Hydrocarbon Profiles in the Navel Orangeworm, Amyelois transitella (Lepidoptera: Pyralidae). Journal of Chemical Ecology, 46(1), 40-47. https://doi.org/10.1007/s10886-019-01129-6
