Jeong, Y., Vyas, K., & Irudayaraj, J. (2023). Toxicity of per- and polyfluoroalkyl substances to microorganisms in confined hydrogel structures. Journal of Hazardous Materials, 456, [131672]. https://doi.org/10.1016/j.jhazmat.2023.131672
Bashir, R., Ganguli, A., Kosari, F., & Wampfler, E. (2023). Spatial Molecular Analysis Of Tissue. (U.S. Patent No. 11667970).
Lee, H., Wang, W., Chauhan, N., Xiong, Y., Magazine, N., Valdescruz, O., Kim, D. Y., Qiu, T., Huang, W., Wang, X., & Cunningham, B. T. (2023). Rapid detection of intact SARS-CoV-2 using designer DNA Nets and a pocket-size smartphone-linked fluorimeter. Biosensors and Bioelectronics, 229, [115228]. https://doi.org/10.1016/j.bios.2023.115228
Valera, E., Kindratenko, V., Jankelow, A. M., Heredia, J., Kim, A. Y., Cowell, T. W., Chen, C. L., White, K. C., Han, H. S., & Bashir, R. (2023). Electrochemical point-of-care devices for the diagnosis of sepsis. Current Opinion in Electrochemistry, 39, [101300]. https://doi.org/10.1016/j.coelec.2023.101300
Cunningham, B. T., Bashir, R., Ganguli, A., Damhorst, G. L., Brooks, I., Yu, H., Chen, W., Sun, F., Ornob, A., Nash, D., & Hirschberg, D. L. (2023). System For Rapid, Portable, And Multiplexed Detection And Identification Of Pathogen Specific Nucleic Acid Sequences. (U.S. Patent No. 11654429).
Liu, L., Tibbs, J., Li, N., Bacon, A., Shepherd, S., Lee, H., Chauhan, N., Demirci, U., Wang, X., & Cunningham, B. T. (2023). A photonic resonator interferometric scattering microscope for label-free detection of nanometer-scale objects with digital precision in point-of-use environments. Biosensors and Bioelectronics, 228, [115197]. https://doi.org/10.1016/j.bios.2023.115197
Mogol, A. N., Zuo, Q., Yoo, J. Y., Kaminsky, A. Z., Imir, O. B., Landesman, Y., Walker, C. J., & Madak erdogan, Z. (2023). NAD + Metabolism Generates a Metabolic Vulnerability in Endocrine-Resistant Metastatic Breast Tumors in Females. Endocrinology, [bqad073]. https://doi.org/10.1210/endocr/bqad073
Volk, M. J., Tran, V. G., Tan, S. I., Mishra, S., Fatma, Z., Boob, A., Li, H., Xue, P., Martin, T. A., & Zhao, H. (2023). Metabolic Engineering: Methodologies and Applications. Chemical reviews, 123(9), 5521-5570. https://doi.org/10.1021/acs.chemrev.2c00403
Calderón-Olvera, R. M., Arroyo, E., Jankelow, A. M., Bashir, R., Valera, E., Ocaña, M., & Becerro, A. I. (2023). Persistent Luminescence Zn2GeO4:Mn2+ Nanoparticles Functionalized with Polyacrylic Acid: One-Pot Synthesis and Biosensing Applications. ACS Applied Materials and Interfaces, 15(17), 20613-20624. https://doi.org/10.1021/acsami.2c21735
Pan, C., Chien, E., & Milenkovic, O. (2023). Unlearning Graph Classifiers with Limited Data Resources. In ACM Web Conference 2023 - Proceedings of the World Wide Web Conference, WWW 2023 (pp. 716-726). (ACM Web Conference 2023 - Proceedings of the World Wide Web Conference, WWW 2023). Association for Computing Machinery. https://doi.org/10.1145/3543507.3583547
Wang, X., Shepherd, S., Li, N., Che, C., Song, T., Xiong, Y., Palm, I. R., Zhao, B., Kohli, M., Demirci, U., Lu, Y., & Cunningham, B. T. (2023). A Target Recycling Amplification Process for the Digital Detection of Exosomal MicroRNAs through Photonic Resonator Absorption Microscopy. Angewandte Chemie - International Edition, 62(16), [e202217932]. https://doi.org/10.1002/anie.202217932
Smith, L., & Smith, A. M. (2023). Ultrasensitive Micro Rna Quantification. (U.S. Patent No. 11618919).
Liu, W., Zhang, X., Wen, Y., Anastasio, M. A., & Irudayaraj, J. (2023). A machine learning approach to elucidating PFOS-induced alterations of repressive epigenetic marks in kidney cancer cells with single-cell imaging. Environmental Advances, 11, [100344]. https://doi.org/10.1016/j.envadv.2023.100344
Pan, C., Chien, E., Tabaghi, P., Peng, J., & Milenkovic, O. (2023). Provably accurate and scalable linear classifiers in hyperbolic spaces. Knowledge and Information Systems, 65(4), 1817-1850. https://doi.org/10.1007/s10115-022-01820-3
Yu, T., Cui, H., Li, J. C., Luo, Y., Jiang, G., & Zhao, H. (2023). Enzyme function prediction using contrastive learning. Science, 379(6639), 1358-1363. https://doi.org/10.1126/science.adf2465
Rashid, F., Liu, W., Wang, Q., Ji, B., Irudayaraj, J., & Wang, N. (2023). Mechanomemory in protein diffusivity of chromatin and nucleoplasm after force cessation. Proceedings of the National Academy of Sciences, 120(13), [e2221432120]. https://doi.org/10.1073/pnas.2221432120
Danciu, O. C., Holdhoff, M., Peterson, R. A., Fischer, J. H., Liu, L. C., Wang, H., Venepalli, N. K., Chowdhery, R., Nicholas, M. K., Russell, M. J., Fan, T. M., Hergenrother, P. J., Tarasow, T. M., & Dudek, A. Z. (2023). Phase I study of procaspase-activating compound-1 (PAC-1) in the treatment of advanced malignancies. British Journal of Cancer, 128(5), 783-792. https://doi.org/10.1038/s41416-022-02089-7
Chembazhi, U. V., Tung, W. S., Hwang, H., Wang, Y., Lalwani, A., Nguyen, K. L., Bangru, S., Yee, D., Chin, K., Yang, J., Kalsotra, A., & Mei, W. (2023). PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression. Nucleic acids research, 51(5), 2397-2414. [gkad042]. https://doi.org/10.1093/nar/gkad042
Xiong, Y., Shepherd, S., Tibbs, J., Bacon, A., Liu, W., Akin, L. D., Ayupova, T., Bhaskar, S., & Cunningham, B. T. (2023). Photonic Crystal Enhanced Fluorescence: A Review on Design Strategies and Applications. Micromachines, 14(3), [668]. https://doi.org/10.3390/mi14030668
Jeong, Y., & Irudayaraj, J. (2023). Hierarchical encapsulation of bacteria in functional hydrogel beads for inter- and intra- species communication. Acta Biomaterialia, 158, 203-215. https://doi.org/10.1016/j.actbio.2023.01.003
Hu, M., Dinh, H. V., Shen, Y., Suthers, P. F., Foster, C. J., Call, C. M., Ye, X., Pratas, J., Fatma, Z., Zhao, H., Rabinowitz, J. D., & Maranas, C. D. (2023). Comparative study of two Saccharomyces cerevisiae strains with kinetic models at genome-scale. Metabolic Engineering, 76, 1-17. https://doi.org/10.1016/j.ymben.2023.01.001
Rashid, F., Dubinkina, V., Ahmad, S., Maslov, S., & Irudayaraj, J. M. K. (2023). Gut Microbiome-Host Metabolome Homeostasis upon Exposure to PFOS and GenX in Male Mice. Toxics, 11(3), [281]. https://doi.org/10.3390/toxics11030281
Zhou, S., Fatma, Z., Xue, P., Mishra, S., Cao, M., Zhao, H., & Sweedler, J. V. (2023). Mass Spectrometry-Based High-Throughput Quantification of Bioproducts in Liquid Culture. Analytical Chemistry, 95(8), 4067-4076. https://doi.org/10.1021/acs.analchem.2c04845
Harley, B. A. C., Lu, Y., Cunningham, B. T., Zhuo, Y., Choi, J. S., Marin, T., & Singamaneni, S. (2023). Photonic Resonator Absorption Microscopy (pram) For Digital Resolution Biomolecular Diagnostics. (U.S. Patent No. 11591640).
Bacon, A., Wang, W., Lee, H., Umrao, S., Sinawang, P. D., Akin, D., Khemtonglang, K., Tan, A., Hirshfield, S., Demirci, U., Wang, X., & Cunningham, B. T. (2023). Review of HIV Self Testing Technologies and Promising Approaches for the Next Generation. Biosensors, 13(2), [298]. https://doi.org/10.3390/bios13020298
Arif, W., Mathur, B., Saikali, M. F., Chembazhi, U. V., Toohill, K., Song, Y. J., Hao, Q., Karimi, S., Blue, S. M., Yee, B. A., Van Nostrand, E. L., Bangru, S., Guzman, G., Yeo, G. W., Prasanth, K. V., Anakk, S., Cummins, C. L., & Kalsotra, A. (2023). Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications, 14(1), [551]. https://doi.org/10.1038/s41467-023-35932-3
Messerschmidt, V., Ren, W., Tsipursky, M., & Irudayaraj, J. (2023). Characterization of Oxygen Nanobubbles and In Vitro Evaluation of Retinal Cells in Hypoxia. Translational Vision Science and Technology, 12(2), [16]. https://doi.org/10.1167/tvst.12.2.16
Tu, Z., Irudayaraj, J., & Lee, Y. (2023). Characterizing Spray-Dried Powders through NIR Spectroscopy: Effect of Two Preparation Strategies for Calibration Samples and Comparison of Two Types of NIR Spectrometers. Foods, 12(3), [467]. https://doi.org/10.3390/foods12030467
Zhou, Y., Mirts, E. N., Yook, S., Waugh, M., Martini, R., Jin, Y. S., & Lu, Y. (2023). Reshaping the 2-Pyrone Synthase Active Site for Chemoselective Biosynthesis of Polyketides. Angewandte Chemie - International Edition, 62(5), [e202212440]. https://doi.org/10.1002/anie.202212440
Kim, Y., Yang, Y., Zhang, X., Li, Z., Vázquez-Guardado, A., Park, I., Wang, J., Efimov, A. I., Dou, Z., Wang, Y., Park, J., Luan, H., Ni, X., Kim, Y. S., Baek, J., Park, J. J., Xie, Z., Zhao, H., Gazzola, M., ... Bashir, R. (2023). Remote control of muscle-driven miniature robots with battery-free wireless optoelectronics. Science Robotics, 8(74), eadd1053. https://doi.org/10.1126/scirobotics.add1053
Mestre, R., Fuentes, J., Lefaix, L., Wang, J., Guix, M., Murillo, G., Bashir, R., & Sánchez, S. (2023). Improved Performance of Biohybrid Muscle-Based Bio-Bots Doped with Piezoelectric Boron Nitride Nanotubes. Advanced Materials Technologies, 8(2), [2200505]. https://doi.org/10.1002/admt.202200505
Cheong, C. B., Peh, G. R., Wei, Y., Rehka, T., Ang, E. L., Zhao, H., Zhang, C., & Lim, Y. H. (2023). A Spirobicyclo[3.1.0]Terpene from the Investigation of Sesquiterpene Synthases from Lactarius deliciosus. ACS chemical biology, 18(1), 134-140. https://doi.org/10.1021/acschembio.2c00760
Shinn, L. M., Mansharamani, A., Baer, D. J., Novotny, J. A., Charron, C. S., Khan, N. A., Zhu, R., & Holscher, H. D. (2023). Fecal Metabolites as Biomarkers for Predicting Food Intake by Healthy Adults. The Journal of nutrition, 152(12), 2956-2965. [nxac195]. https://doi.org/10.1093/jn/nxac195
Singh, R., Bhagwat, S. S., Viswanathan, M. B., Cortés‐Peña, Y. R., Eilts, K. K., Mcdonough, G., Cao, M., Guest, J. S., Zhao, H., & Singh, V. (2023). Adsorptive separation and recovery of triacetic acid lactone from fermentation broth. Biofuels, Bioproducts and Biorefining, 17(1), 109-120. https://doi.org/10.1002/bbb.2427
Gabrys, R., Pattabiraman, S., & Milenkovic, O. (2023). Reconstruction of Sets of Strings From Prefix/Suffix Compositions. IEEE Transactions on Communications, 71(1), 3-12. https://doi.org/10.1109/TCOMM.2022.3222341
Rana, V., Chien, E., Peng, J., & Milenkovic, O. (2023). Small-Sample Estimation of the Mutational Support and Distribution of SARS-CoV-2. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(1), 668-682. https://doi.org/10.1109/TCBB.2022.3165395
Jeong, Y., Kong, W., Lu, T., & Irudayaraj, J. (2023). Soft hydrogel-shell confinement systems as bacteria-based bioactuators and biosensors. Biosensors and Bioelectronics, 219, [114809]. https://doi.org/10.1016/j.bios.2022.114809
Mishra, S., Wang, Z., Volk, M. J., & Zhao, H. (2023). Design and application of a kinetic model of lipid metabolism in Saccharomyces cerevisiae. Metabolic Engineering, 75, 12-18. https://doi.org/10.1016/j.ymben.2022.11.003
Zhang, X., Flaws, J. A., Spinella, M. J., & Irudayaraj, J. (2023). The Relationship between Typical Environmental Endocrine Disruptors and Kidney Disease. Toxics, 11(1), [32]. https://doi.org/10.3390/toxics11010032
Pattabiraman, S., Gabrys, R., & Milenkovic, O. (Accepted/In press). Coding for Polymer-Based Data Storage. IEEE Transactions on Information Theory, 1. https://doi.org/10.1109/TIT.2023.3267620
Lee, H., Wang, W., Chauhan, N., Xiong, Y., Magazine, N., Valdescruz, O., Kim, D. Y., Qiu, T., Huang, W., Wang, X., & Cunningham, B. T. (2023). Rapid, sensitive detection of intact SARS-CoV-2 using DNA nets and a smartphone-linked fluorimeter. In G. L. Cote (Ed.), Optical Diagnostics and Sensing XXIII: Toward Point-of-Care Diagnostics [123870B] (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 12387). SPIE. https://doi.org/10.1117/12.2650836
Rodriguez, A., Gandavadi, D., Mathivanan, J., Song, T., Madhanagopal, B. R., Talbot, H., Sheng, J., Wang, X., & Chandrasekaran, A. R. (Accepted/In press). Self-Assembly of DNA Nanostructures in Different Cations. Small. https://doi.org/10.1002/smll.202300040
Shah, M. M., Ahmad, K., Boota, S., Jensen, T., La Frano, M. R., & Irudayaraj, J. (2023). Sensor technologies for the detection and monitoring of endocrine-disrupting chemicals. Frontiers in Bioengineering and Biotechnology, 11, [1141523]. https://doi.org/10.3389/fbioe.2023.1141523
Wang, W., Lee, H., Jankelow, A. M., Hoang, T. H., Bacon, A., Sun, F., Chae, S., Kindratenko, V., Koprowski, K., Stavins, R. A., Ceriani, D., Engelder, Z., King, W. P., Do, M. N., Bashir, R., Valera, E., & Cunningham, B. T. (2023). Smartphone Clip-On Instrument and Microfluidic Processor for Rapid Sample-to-Answer Detection of Zika Virus in Whole Blood Using Spatial RT-LAMP. In G. L. Cote (Ed.), Optical Diagnostics and Sensing XXIII: Toward Point-of-Care Diagnostics [123870D] (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 12387). SPIE. https://doi.org/10.1117/12.2649267
Cunningham, B. T. (2023). Ultrasensitive and ultra selective liquid biopsy: Nanophotonics-driven digital resolution biomolecule sensing combined with target molecule recycling. In R. R. Alfano, & A. B. Seddon (Eds.), Optical Biopsy XXI: Toward Real-Time Spectroscopic Imaging and Diagnosis [1237304] (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 12373). SPIE. https://doi.org/10.1117/12.2659440
Ahsen, M. E., Ayvaci, M. U. S., & Mookerjee, R. (2023). When Machines Will Take Over? Algorithms for Human-Machine Collaborative Decision Making in Healthcare. In T. X. Bui (Ed.), Proceedings of the 56th Annual Hawaii International Conference on System Sciences, HICSS 2023 (pp. 5733-5740). (Proceedings of the Annual Hawaii International Conference on System Sciences; Vol. 2023-January). IEEE Computer Society.
Milenkovic, O., Hernandez, A. G., Zhao, H., & Tabatabaei, S. (2022). Nick-based Data Storage In Native Nucleic Acids. (U.S. Patent No. 11538554).
Cabrera, A., Edelstein, H. I., Glykofrydis, F., Love, K. S., Palacios, S., Tycko, J., Zhang, M., Lensch, S., Shields, C. E., Livingston, M., Weiss, R., Zhao, H., Haynes, K. A., Morsut, L., Chen, Y. Y., Khalil, A. S., Wong, W. W., Collins, J. J., Rosser, S. J., ... Deans, T. L. (2022). The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems, 13(12), 950-973. https://doi.org/10.1016/j.cels.2022.11.005
Liu, Y., Wei, Y., Teh, T. M., Liu, D., Zhou, Y., Zhao, S., Ang, E. L., Zhao, H., & Zhang, Y. (2022). Identification and Characterization of the Biosynthetic Pathway of the Sulfonolipid Capnine. Biochemistry, 61(24), 2861-2869. https://doi.org/10.1021/acs.biochem.2c00102
Burke, M. D., Fan, T. M., Hergenrother, P. J., Brooke, C. B., Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., & Wang, L. (2022). Saliva-based Molecular Testing For SARS-CoV-2. (U.S. Patent No. 11530457).
Shi, W., Bell, S., Iyer, H., Brenden, C. K., Zhang, Y., Kim, S., Park, I., Bashir, R., Sweedler, J., & Vlasov, Y. (2022). Integrated silicon microfluidic chip for picoliter-scale analyte segmentation and microscale printing for mass spectrometry imaging. Lab on a chip, 23(1), 72-80. https://doi.org/10.1039/d2lc00688j
Sullivan, K. M., Ko, E., Kim, E. M., Ballance, W. C., Ito, J. D., Chalifoux, M., Kim, Y. J., Bashir, R., & Kong, H. (2022). Extracellular Microenvironmental Control for Organoid Assembly. Tissue Engineering - Part B: Reviews, 28(6), 1209-1222. https://doi.org/10.1089/ten.teb.2021.0186
Ayikpoe, R. S., Shi, C., Battiste, A. J., Eslami, S. M., Ramesh, S., Simon, M. A., Bothwell, I. R., Lee, H., Rice, A. J., Ren, H., Tian, Q., Harris, L. A., Sarksian, R., Zhu, L., Frerk, A. M., Precord, T. W., van der Donk, W. A., Mitchell, D. A., & Zhao, H. (2022). A scalable platform to discover antimicrobials of ribosomal origin. Nature communications, 13(1), [6135]. https://doi.org/10.1038/s41467-022-33890-w
Peng, Q., Huang, Z., Sun, K., Liu, Y., Yoon, C. W., Harrison, R. E. S., Schmitt, D. L., Zhu, L., Wu, Y., Tasan, I., Zhao, H., Zhang, J., Zhong, S., Chien, S., & Wang, Y. (2022). Engineering inducible biomolecular assemblies for genome imaging and manipulation in living cells. Nature communications, 13(1), [7933]. https://doi.org/10.1038/s41467-022-35504-x
Cable, J., Arlotta, P., Parker, K. K., Hughes, A. J., Goodwin, K., Mummery, C. L., Kamm, R. D., Engle, S. J., Tagle, D. A., Boj, S. F., Stanton, A. E., Morishita, Y., Kemp, M. L., Norfleet, D. A., May, E. E., Lu, A., Bashir, R., Feinberg, A. W., Hull, S. M., ... Mulero-Russe, A. (2022). Engineering multicellular living systems—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1518(1), 183-195. https://doi.org/10.1111/nyas.14896
Berry, M. R., Fadl-Alla, B. A., Samuelson, J., Rosol, T. J., & Fan, T. M. (2022). Investigating PSMA differential expression in canine uroepithelial carcinomas to aid disease-based stratification and guide therapeutic selection. BMC Veterinary Research, 18(1), [441]. https://doi.org/10.1186/s12917-022-03544-6
Schultz, J. C., Mishra, S., Gaither, E., Mejia, A., Dinh, H., Maranas, C., & Zhao, H. (2022). Metabolic engineering of Rhodotorula toruloides IFO0880 improves C16 and C18 fatty alcohol production from synthetic media. Microbial cell factories, 21(1), [26]. https://doi.org/10.1186/s12934-022-01750-3
Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., Wang, L., Fredrickson, R. L., Wang, T., Wong, G. N., Uelmen, J., Maslov, S., Weiner, Z. J., Tkachenko, A. V., Zhang, H., Liu, Z., Ibrahim, A., Patel, S. J., Paul, J. M., Vance, N. P., Gulick, J. G., ... Burke, M. D. (2022). Mitigation of SARS-CoV-2 transmission at a large public university. Nature communications, 13(1), [3207]. https://doi.org/10.1038/s41467-022-30833-3
Enghiad, B., Xue, P., Singh, N., Boob, A. G., Shi, C., Petrov, V. A., Liu, R., Peri, S. S., Lane, S. T., Gaither, E. D., & Zhao, H. (2022). PlasmidMaker is a versatile, automated, and high throughput end-to-end platform for plasmid construction. Nature communications, 13(1), [2697]. https://doi.org/10.1038/s41467-022-30355-y
Pan, C., Tabatabaei, S. K., Tabatabaei Yazdi, S. M. H., Hernandez, A. G., Schroeder, C. M., & Milenkovic, O. (2022). Rewritable two-dimensional DNA-based data storage with machine learning reconstruction. Nature communications, 13(1), [2984]. https://doi.org/10.1038/s41467-022-30140-x
Khandelwal, A., Athreya, N., Tu, M. Q., Janavicius, L. L., Yang, Z., Milenkovic, O., Leburton, J. P., Schroeder, C. M., & Li, X. (2022). Self-assembled microtubular electrodes for on-chip low-voltage electrophoretic manipulation of charged particles and macromolecules. Microsystems and Nanoengineering, 8(1), [27]. https://doi.org/10.1038/s41378-022-00354-6
Peng, J., Serrano, G., Traniello, I. M., Calleja-Cervantes, M. E., Chembazhi, U. V., Bangru, S., Ezponda, T., Rodriguez-Madoz, J. R., Kalsotra, A., Prosper, F., Ochoa, I., & Hernaez, M. (2022). SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes. Communications biology, 5(1), [351]. https://doi.org/10.1038/s42003-022-03319-7
Han, X., Jeong, Y., & Irudayaraj, J. (2022). Nanocatalase-Based Oxygen-Generating Nanocarriers for Active Oxygen Delivery to Relieve Hypoxia in Pancreatic Cancer. ACS Applied Nano Materials, 5(11), 17248-17257. https://doi.org/10.1021/acsanm.2c04241
Zhao, H. (2022). The Ever-Expanding Boundaries of Synthetic Biology. ACS synthetic biology, 11(11), 3550. https://doi.org/10.1021/acssynbio.2c00582
Wen, Y., Liu, W., David, B., Ren, W., & Irudayaraj, J. (2022). Multifunctional Oxygenated Particles for Targeted Cancer Drug Delivery and Evaluation with Darkfield Hyperspectral Imaging. ACS Omega, 7(45), 41275-41283. https://doi.org/10.1021/acsomega.2c04953
Zhao, F., Wei, Y., Wang, X., Zhou, Y., Tong, Y., Ang, E. L., Liu, S., Zhao, H., & Zhang, Y. (2022). Enzymatic Synthesis of the Unnatural Nucleotide 2’-Deoxyisoguanosine 5’-Monophosphate. ChemBioChem, 23(21), [e202200295]. https://doi.org/10.1002/cbic.202200295
Erdogan, Z. M., & Hammes, S. R. (2022). Expanding Our Scope and Our Identity. Journal of the Endocrine Society, 6(11), [bvac149]. https://doi.org/10.1210/jendso/bvac149
Hsu, W., Hippe, D. S., Nakhaei, N., Wang, P. C., Zhu, B., Siu, N., Ahsen, M. E., Lotter, W., Sorensen, A. G., Naeim, A., Buist, D. S. M., Schaffter, T., Guinney, J., Elmore, J. G., & Lee, C. I. (2022). External Validation of an Ensemble Model for Automated Mammography Interpretation by Artificial Intelligence. JAMA network open, 5(11), e2242343. https://doi.org/10.1001/jamanetworkopen.2022.42343
Nelczyk, A. T., Ma, L., Gupta, A. D., Gamage, H. E. V., McHenry, M. T., Henn, M. A., Kadiri, M., Wang, Y., Krawczynska, N., Bendre, S., He, S., Shahoei, S. H., Madak-Erdogan, Z., Hsiao, S. H., Saleh, T., Carpenter, V., Gewirtz, D. A., Spinella, M. J., & Nelson, E. R. (2022). The nuclear receptor TLX (NR2E1) inhibits growth and progression of triple- negative breast cancer. Biochimica et Biophysica Acta - Molecular Basis of Disease, 1868(11), [166515]. https://doi.org/10.1016/j.bbadis.2022.166515
Sonam, S., Bangru, S., Perry, K. J., Chembazhi, U. V., Kalsotra, A., & Henry, J. J. (2022). Cellular and molecular profiles of larval and adult Xenopus corneal epithelia resolved at the single-cell level. Developmental Biology, 491, 13-30. https://doi.org/10.1016/j.ydbio.2022.08.007
Qiao, W., Xu, S., Liu, Z., Fu, X., Zhao, H., & Shi, S. (2022). Challenges and opportunities in C1-based biomanufacturing. Bioresource Technology, 364, [128095]. https://doi.org/10.1016/j.biortech.2022.128095
Maino Vieytes, C. A., Zhu, R., Gany, F., Burton-Obanla, A., & Arthur, A. E. (2022). Empirical Dietary Patterns Associated with Food Insecurity in U.S. Cancer Survivors: NHANES 1999–2018. International journal of environmental research and public health, 19(21), [14062]. https://doi.org/10.3390/ijerph192114062
Audu, C. O., Melvin, W. J., Joshi, A. D., Wolf, S. J., Moon, J. Y., Davis, F. M., Barrett, E. C., Mangum, K. D., Deng, H., Xing, X., Wasikowski, R., Tsoi, L. C., Sharma, S. B., Bauer, T. M., Shadiow, J., Corriere, M. A., Obi, A. T., Kunkel, S. L., Levi, B., ... Gallagher, K. A. (2022). Macrophage-specific inhibition of the histone demethylase JMJD3 decreases STING and pathologic inflammation in diabetic wound repair. Cellular and Molecular Immunology, 19(11), 1251-1262. https://doi.org/10.1038/s41423-022-00919-5
Zhou, H., Zhu, R., Ung, A., & Schatz, B. (2022). Population analysis of mortality risk: Predictive models from passive monitors using motion sensors for 100,000 UK Biobank participants. PLOS Digital Health, 1(10), [e0000045]. https://doi.org/10.1371/journal.pdig.0000045
Zhang, Z., & Zhao, H. (2022). Tunnel engineering enables multifaceted improvements in halogenase. Chem Catalysis, 2(10), 2432-2434. https://doi.org/10.1016/j.checat.2022.09.010
Gordon, D. L., Foreman, J. H., Connolly, S. L., Schnelle, A. N., Fan, T. M., & Barger, A. M. (2022). Acute phase protein concentrations following serial procaine penicillin G injections in horses. Equine veterinary journal. https://doi.org/10.1111/evj.13886
Ganguli, A., Lim, J., Mostafa, A., Saavedra, C., Rayabharam, A., Aluru, N. R., Wester, M., White, K. C., Kumar, J., McGuffin, R., Frederick, A., Valera, E., & Bashir, R. (2022). A culture-free biphasic approach for sensitive and rapid detection of pathogens in dried whole-blood matrix. Proceedings of the National Academy of Sciences of the United States of America, 119(40), e2209607119. [e2209607119]. https://doi.org/10.1073/pnas.2209607119
LeBlanc, A. K., Mazcko, C. N., Fan, T. M., Vail, D. M., Flesner, B. K., Bryan, J. N., Li, S., Wang, F., Harris, S., Vargas, J. D., Govindharajulu, J. P., Jaganathan, S., Tomaino, F., Srivastava, A. K., Chou, T. F., Stott, G. M., Covey, J. M., Mroczkowski, B., & Doroshow, J. H. (2022). Comparative Oncology Assessment of a Novel Inhibitor of Valosin-Containing Protein in Tumor-Bearing Dogs. Molecular Cancer Therapeutics, 21(10), 1510-1523. https://doi.org/10.1158/1535-7163.MCT-22-0167
Fan, T. M., Garrett, L. D., Selting, K. A., & Constable, P. D. (2022). Novel immunotherapy offers promising weapon against canine melanoma. American journal of veterinary research, 83(10). https://doi.org/10.2460/ajvr.22.08.0133
Lee, Y. G., Kim, C., Kuanyshev, N., Kang, N. K., Fatma, Z., Wu, Z. Y., Cheng, M. H., Singh, V., Yoshikuni, Y., Zhao, H., & Jin, Y. S. (2022). Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates. Journal of Agricultural and Food Chemistry, 70(38), 12085-12094. https://doi.org/10.1021/acs.jafc.2c04251
Zheng, L., Wen, Y., Ren, W., Duan, H., Lin, J., & Irudayaraj, J. (2022). Hyperspectral dark-field microscopy for pathogen detection based on spectral angle mapping. Sensors and Actuators B: Chemical, 367, [132042]. https://doi.org/10.1016/j.snb.2022.132042
Liu, X., & Milenkovic, O. (2022). Finding the second-best candidate under the Mallows model. Theoretical Computer Science, 929, 39-68. https://doi.org/10.1016/j.tcs.2022.06.029
Wang, J., Wang, Y., Kim, Y., Yu, T., & Bashir, R. (2022). Multi-actuator light-controlled biological robots. APL Bioengineering, 6(3), [036103]. https://doi.org/10.1063/5.0091507
Cao, M., Tran, V. G., Qin, J., Olson, A., Mishra, S., Schultz, JC., Huang, C., Xie, D., & Zhao, H. (2022). Metabolic engineering of oleaginous yeast Rhodotorula toruloides for overproduction of triacetic acid lactone. Biotechnology and bioengineering, 119(9), 2529-2540. https://doi.org/10.1002/bit.28159
Ren, W., & Irudayaraj, J. (2022). Magnetic Control-Enhanced Lateral Flow Technique for Ultrasensitive Nucleic Acid Target Detection. ACS Omega, 7(33), 29204-29210. https://doi.org/10.1021/acsomega.2c03276
Yeo, K. I., Park, I., Lee, S. H., Lee, S. Y., Chang, W. J., Bashir, R., Choi, S., & Lee, S. W. (2022). Ultra-sensitive dielectrophoretic surface charge multiplex detection inside a micro-dielectrophoretic device. Biosensors and Bioelectronics, 210, [114235]. https://doi.org/10.1016/j.bios.2022.114235
Chien, E., Tabaghi, P., & Milenkovic, O. (2022). HyperAid: Denoising in Hyperbolic Spaces for Tree-fitting and Hierarchical Clustering. In KDD 2022 - Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 201-211). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3534678.3539378
Wang, X. (2022). Photonic crystal enhanced fluorescence emission and blinking suppression for single quantum dot digital resolution biosensing. Nature communications. https://doi.org/10.1038/s41467-022-32387-w
Ko, E., Aydin, O., Li, Z., Gapinske, L., Huang, K. Y., Saif, T., Bashir, R., & Kong, H. (2022). Empowering engineered muscle in biohybrid pump by extending connexin 43 duration with reduced graphene oxides. Biomaterials, 287, [121643]. https://doi.org/10.1016/j.biomaterials.2022.121643
Yan, X., Shang, P., Yim-im, W., Sun, Y., Zhang, J., Firth, A. E., Lowe, J. F., & Fang, Y. (2022). Molecular characterization of emerging variants of PRRSV in the United States: new features of the -2/-1 programmed ribosomal frameshifting signal in the nsp2 region. Virology, 573, 39-49. https://doi.org/10.1016/j.virol.2022.06.004
Lee, C. J., Qiu, T. A., Hong, Z., Zhang, Z., Min, Y., Zhang, L., Dai, L., Zhao, H., Si, T., & Sweedler, J. V. (2022). Profiling of d-alanine production by the microbial isolates of rat gut microbiota. FASEB Journal, 36(8), [e22446]. https://doi.org/10.1096/fj.202101595R
Liu, W., Padhi, A., Zhang, X., Narendran, J., Anastasio, M. A., Nain, A. S., & Irudayaraj, J. (2022). Dynamic Heterochromatin States in Anisotropic Nuclei of Cells on Aligned Nanofibers. ACS Nano, 16(7), 10754-10767. https://doi.org/10.1021/acsnano.2c02660
Chauhan, N., Xiong, Y., Ren, S., Dwivedy, A., Magazine, N., Zhou, L., Jin, X., Zhang, T., Cunningham, B. T., Yao, S., Huang, W., & Wang, X. (2022). Net-Shaped DNA Nanostructures Designed for Rapid/Sensitive Detection and Potential Inhibition of the SARS-CoV-2 Virus. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.2c04835
Zhao, H. (2022). Synthetic Biology 2.0: The Dawn of a New Era. ACS synthetic biology, 11(7), 2221. https://doi.org/10.1021/acssynbio.2c00332
Kelly, A. M., Berry, M. R., Tasker, S. Z., McKee, S. A., Fan, T. M., & Hergenrother, P. J. (2022). Target-Agnostic P-Glycoprotein Assessment Yields Strategies to Evade Efflux, Leading to a BRAF Inhibitor with Intracranial Efficacy. Journal of the American Chemical Society, 144(27), 12367-12380. https://doi.org/10.1021/jacs.2c03944
Jeong, Y., & Irudayaraj, J. (2022). Multi-layered alginate hydrogel structures and bacteria encapsulation. Chemical Communications, 58(61), 8584-8587. https://doi.org/10.1039/d2cc01187e
Jeong, Y., Tin, A., & Irudayaraj, J. (2022). Flipped Well-Plate Hanging-Drop Technique for Growing Three-Dimensional Tumors. Frontiers in Bioengineering and Biotechnology, 10, [898699]. https://doi.org/10.3389/fbioe.2022.898699
Bailey, R. L., Dog, T. L., Smith-Ryan, A. E., Das, S. K., Baker, F. C., Madak-Erdogan, Z., Hammond, B. R., Sesso, H. D., Eapen, A., Mitmesser, S. H., Wong, A., & Nguyen, H. (2022). Sex Differences Across the Life Course: A Focus On Unique Nutritional and Health Considerations among Women. Journal of Nutrition, 152(7), 1597-1610. https://doi.org/10.1093/jn/nxac059
Mou, Q., Xue, X., Ma, Y., Banik, M., Garcia, V., Guo, W., Wang, J., Song, T., Chen, L. Q., & Lu, Y. (2022). Efficient delivery of a DNA aptamer-based biosensor into plant cells for glucose sensing through thiol-mediated uptake. Science Advances, 8(26), [eabo0902]. https://doi.org/10.1126/sciadv.abo0902
Huang, X., Feng, J., Cui, J., Jiang, G., Harrison, W., Zang, X., Zhou, J., Wang, B., & Zhao, H. (2022). Photoinduced chemomimetic biocatalysis for enantioselective intermolecular radical conjugate addition. Nature Catalysis, 5(7), 586-593. https://doi.org/10.1038/s41929-022-00777-4
Jankelow, A. M., Lee, H., Wang, W., Hoang, T. H., Bacon, A., Sun, F., Chae, S., Kindratenko, V., Koprowski, K., Stavins, R. A., Ceriani, D. D., Engelder, Z. W., King, W. P., Do, M. N., Bashir, R., Valera, E., & Cunningham, B. T. (2022). Smartphone clip-on instrument and microfluidic processor for rapid sample-to-answer detection of Zika virus in whole blood using spatial RT-LAMP. Analyst, 147(17), 3838-3853. https://doi.org/10.1039/d2an00438k
Duan, Y., Wei, Y., Xing, M., Liu, J., Jiang, L., Lu, Q., Liu, X., Liu, Y., Ang, E. L., Liao, R. Z., Yuchi, Z., Zhao, H., & Zhang, Y. (2022). Anaerobic Hydroxyproline Degradation Involving C-N Cleavage by a Glycyl Radical Enzyme. Journal of the American Chemical Society, 144(22), 9715-9722. https://doi.org/10.1021/jacs.2c01673
Smith, L. D., Nalla, S., Kuo, C. W., Kohli, M., & Smith, A. M. (2022). Rapid quantification of microRNA-375 through one-pot primer-generating rolling circle amplification. Analyst, 147(13), 2936-2941. https://doi.org/10.1039/d2an00263a
Boyd, R. I., Ahmad, S., Singh, R., Fazal, Z., Prins, G. S., Erdogan, Z. M., Irudayaraj, J., & Spinella, M. J. (2022). Toward a Mechanistic Understanding of Poly-and Perfluoroalkylated Substances and Cancer. Cancers, 14(12), [2919]. https://doi.org/10.3390/cancers14122919
Zuo, Q., Park, N. H., Lee, J. K., & Madak Erdogan, Z. (2022). Liver Metastatic Breast Cancer: Epidemiology, Dietary Interventions, and Related Metabolism. Nutrients, 14(12). https://doi.org/10.3390/nu14122376
Zuo, Q., Mogol, A. N., Liu, Y. J., Casiano, A. S., Chien, C., Drnevich, J., Imir, O. B., Kulkoyluoglu-Cotul, E., Park, N. H., Shapiro, D. J., Park, B. H., Ziegler, Y., Katzenellenbogen, B. S., Aranda, E., O’Neill, J. D., Raghavendra, A. S., Tripathy, D., & Erdogan, Z. M. (2022). Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy. Molecular Cancer Research, 20(6), 923-937. https://doi.org/10.1158/1541-7786.MCR-21-0781
Wang, X. (2022, May 5). Net-shaped DNA nanostructure designed for rapid/sensitive detection and potential inhibition of SARS-CoV-2 virus. https://doi.org/10.1101/2022.05.04.490692
Zhao, B., Wang, W., Li, N., Garcia-Lezana, T., Che, C., Wang, X., Losic, B., Villanueva, A., & Cunningham, B. T. (2022). Digital-resolution and highly sensitive detection of multiple exosomal small RNAs by DNA toehold probe-based photonic resonator absorption microscopy. Talanta, 241, [123256]. https://doi.org/10.1016/j.talanta.2022.123256
Santaliz Casiano, A., Lee, A., Teteh, D., Madak Erdogan, Z., & Treviño, L. (2022). Endocrine-Disrupting Chemicals and Breast Cancer: Disparities in Exposure and Importance of Research Inclusivity. Endocrinology (United States), 163(5), [bqac034]. https://doi.org/10.1210/endocr/bqac034
Yuan, F., Sharma, J., Nanjappa, S. G., Gaulke, C. A., & Fang, Y. (2022). Effect of Killed PRRSV Vaccine on Gut Microbiota Diversity in Pigs. Viruses, 14(5), [1081]. https://doi.org/10.3390/v14051081
Barger, A., Baker, K., Driskell, E., Sander, W., Roady, P., Berry, M., Schnelle, A., & Fan, T. M. (2022). The use of alkaline phosphatase and runx2 to distinguish osteosarcoma from other common malignant primary bone tumors in dogs. Veterinary pathology, 59(3), 427-432. https://doi.org/10.1177/03009858221083035
Maino Vieytes, C. A., Rodriguez-Zas, S. L., Madak-Erdogan, Z., Smith, R. L., Zarins, K. R., Wolf, G. T., Rozek, L. S., Mondul, A. M., & Arthur , A. E. (2022). Adherence to a priori-Defined Diet Quality Indices Throughout the Early Disease Course Is Associated With Survival in Head and Neck Cancer Survivors: An Application Involving Marginal Structural Models. Frontiers in Nutrition, 9, [791141]. https://doi.org/10.3389/fnut.2022.791141
Harrison, W., Huang, X., & Zhao, H. (2022). Photobiocatalysis for Abiological Transformations. Accounts of chemical research, 55(8), 1087-1096. https://doi.org/10.1021/acs.accounts.1c00719
Chakraborty, B., Das, S., Gupta, A., Xiong, Y., T-V, V., Kizer, M. E., Duan, J., Chandrasekaran, A. R., & Wang, X. (2022). Aptamers for Viral Detection and Inhibition. ACS Infectious Diseases, 8(4), 667-692. https://doi.org/10.1021/acsinfecdis.1c00546
Lowerison, M., Zhang, W., Chen, X., Fan, T., & Song, P. (2022). Characterization of Anti-Angiogenic Chemo-Sensitization via Longitudinal Ultrasound Localization Microscopy in Colorectal Carcinoma Tumor Xenografts. IEEE Transactions on Biomedical Engineering, 69(4), 1449 - 1460. https://doi.org/10.1109/TBME.2021.3119280
Boudreau, M. W., Mulligan, M. P., Shapiro, D. J., Fan, T. M., & Hergenrother, P. J. (2022). Activators of the Anticipatory Unfolded Protein Response with Enhanced Selectivity for Estrogen Receptor Positive Breast Cancer. Journal of Medicinal Chemistry, 65(5), 3894-3912. https://doi.org/10.1021/acs.jmedchem.1c01730
Tabatabaei, S. K., Pham, B., Pan, C., Liu, J., Chandak, S., Shorkey, S. A., Hernandez, A. G., Aksimentiev, A., Chen, M., Schroeder, C. M., & Milenkovic, O. (2022). Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Neural Network Nanopore Readout Processing. Nano letters, 22(5), 1905-1914. https://doi.org/10.1021/acs.nanolett.1c04203
Wang, X. (2022). Resolving the sequence of DNA and RNA strands by tip-enhanced Raman spectroscopy. In Smart Photonic and Optoelectronic Integrated Circuits 2022 https://doi.org/10.1117/12.2610375
Tran, V. G., & Zhao, H. (2022). Engineering robust microorganisms for organic acid production. Journal of Industrial Microbiology and Biotechnology, 49(2), [kuab067]. https://doi.org/10.1093/jimb/kuab067
Aydin, O., Passaro, A. P., Raman, R., Spellicy, S. E., Weinberg, R. P., Kamm, R. D., Sample, M., Truskey, G. A., Zartman, J., Dar, R. D., Palacios, S., Wang, J., Tordoff, J., Montserrat, N., Bashir, R., Saif, M. T. A., & Weiss, R. (2022). Principles for the design of multicellular engineered living systems. APL Bioengineering, 6(1), [010903]. https://doi.org/10.1063/5.0076635
Zhao, H., & Enghiad, B. (2022). Programmable DNA-guided artificial restriction enzymes. (U.S. Patent No. 11261483).
Zhang, L., Dutta, S., Xiong, S., Chan, M., Chan, K. K., Fan, T. M., Bailey, K. L., Lindeblad, M., Cooper, L. M., Rong, L., Gugliuzza, A. F., Shukla, D., Procko, E., Rehman, J., & Malik, A. B. (2022). Engineered ACE2 decoy mitigates lung injury and death induced by SARS-CoV-2 variants. Nature chemical biology, 18(3), 342-351. https://doi.org/10.1038/s41589-021-00965-6
Ding, W., Meng, Q., Dong, G., Qi, N., Zhao, H., & Shi, S. (2022). Metabolic engineering of threonine catabolism enables Saccharomyces cerevisiae to produce propionate under aerobic conditions. Biotechnology Journal, 17(3), [2100579]. https://doi.org/10.1002/biot.202100579
Hu, W. Y., Lu, R., Hu, D. P., Imir, O. B., Zuo, Q., Moline, D., Afradiasbagharani, P., Liu, L., Lowe, S., Birch, L., Griend, D. J. V., Madak-Erdogan, Z., & Prins, G. S. (2022). Per- and polyfluoroalkyl substances target and alter human prostate stem-progenitor cells. Biochemical Pharmacology, 197, [114902]. https://doi.org/10.1016/j.bcp.2021.114902
Lim, J., Stavins, R., Kindratenko, V., Baek, J., Wang, L., White, K., Kumar, J., Valera, E., King, W. P., & Bashir, R. (2022). Microfluidic point-of-care device for detection of early strains and B.1.1.7 variant of SARS-CoV-2 virus. Lab on a chip, 22(7), 1297-1309. https://doi.org/10.1039/d2lc00021k
Che, C., Xue, R., Li, N., Gupta, P., Wang, X., Zhao, B., Singamaneni, S., Nie, S., & Cunningham, B. T. (2022). Accelerated Digital Biodetection Using Magneto-plasmonic Nanoparticle-Coupled Photonic Resonator Absorption Microscopy. ACS Nano, 16(2), 2345–2354. https://doi.org/10.1021/acsnano.1c08569
Deng, H., Konopka, C. J., Prabhu, S., Sarkar, S., Medina, N. G., Fayyaz, M., Arogundade, O. H., Vidana Gamage, H. E., Shahoei, S. H., Nall, D., Youn, Y., Dobrucka, I. T., Audu, C. O., Joshi, A., Melvin, W. J., Gallagher, K. A., Selvin, P. R., Nelson, E. R., Dobrucki, L. W., ... Smith, A. M. (2022). Dextran-Mimetic Quantum Dots for Multimodal Macrophage Imaging In Vivo, Ex Vivo, and In Situ. ACS Nano, 16(2), 1999-2012. https://doi.org/10.1021/acsnano.1c07010
Liang, J., Zhang, H., Tan, Y. L., Zhao, H., & Ang, E. L. (2022). Directed Evolution of Replication-Competent Double-Stranded DNA Bacteriophage toward New Host Specificity. ACS synthetic biology, 11(2), 634-643. https://doi.org/10.1021/acssynbio.1c00319
Svec, R. L., Mckee, S. A., Berry, M. R., Kelly, A. M., Fan, T. M., & Hergenrother, P. J. (2022). Novel Imidazotetrazine Evades Known Resistance Mechanisms and Is Effective against Temozolomide-Resistant Brain Cancer in Cell Culture. ACS chemical biology, 17(2), 299–313. https://doi.org/10.1021/acschembio.2c00022
Zimmerman, S. C., Bai, Y., & Kalsotra, A. (2022). Multivalent ligand for myotonic dystrophy. (U.S. Patent No. 11242326).
Li, N., Wang, X., Tibbs, J., Che, C., Peinetti, A. S., Zhao, B., Liu, L., Barya, P., Cooper, L., Rong, L., Wang, X., Lu, Y., & Cunningham, B. T. (2022). Label-Free Digital Detection of Intact Virions by Enhanced Scattering Microscopy. Journal of the American Chemical Society, 144(4), 1498-1502. https://doi.org/10.1021/jacs.1c09579
Xiong, Y., Li, N., Che, C., Wang, W., Barya, P., Liu, W., Liu, L., Wang, X., Wu, S., Hu, H., & Cunningham, B. T. (2022). Microscopies Enabled by Photonic Metamaterials. Sensors, 22(3), [1086]. https://doi.org/10.3390/s22031086
Ren, S., Fraser, K., Kuo, L., Chauhan, N., Adrian, A. T., Zhang, F., Linhardt, R. J., Kwon, P. S., & Wang, X. (2022). Designer DNA nanostructures for viral inhibition. Nature Protocols, 17(2), 282-326. https://doi.org/10.1038/s41596-021-00641-y
Li, N., Zhao, B., Stavins, R., Peinetti, A. S., Chauhan, N., Bashir, R., Cunningham, B. T., King, W. P., Lu, Y., Wang, X., & Valera, E. (2022). Overcoming the limitations of COVID-19 diagnostics with nanostructures, nucleic acid engineering, and additive manufacturing. Current Opinion in Solid State and Materials Science, 26(1), [100966]. https://doi.org/10.1016/j.cossms.2021.100966
Ma, L., Smith, A. M., & Tu, C. (2022). Compact and homogeneous quantum dots and methods of making the same. (U.S. Patent No. 11226336).
Zhang, Y., Kim, S., Shi, W., Zhao, Y., Park, I., Brenden, C., Iyer, H., Jha, P., Bashir, R., Sweedler, J. V., & Vlasov, Y. (2022). Droplet-assisted electrospray phase separation using an integrated silicon microfluidic platform. Lab on a chip, 22(1), 40-46. https://doi.org/10.1039/d1lc00758k
Shoaib, Z., Fan, T. M., & Irudayaraj, J. M. K. (2022). Osteosarcoma mechanobiology and therapeutic targets. British Journal of Pharmacology, 179(2), 201-217. https://doi.org/10.1111/bph.15713
Ahmed, R., Augustine, R., Valera, E., Ganguli, A., Mesaeli, N., Ahmad, I. S., Bashir, R., & Hasan, A. (2022). Spatial mapping of cancer tissues by OMICS technologies. Biochimica et Biophysica Acta - Reviews on Cancer, 1877(1), 188663. [188663]. https://doi.org/10.1016/j.bbcan.2021.188663
Chen, S., Hwang, M. T., Wang, J., Ganguli, A., Park, I., Kim, Y., Valera, E., Nam, S. W., Aluru, N. R., Van Der Zande, A. M., & Bashir, R. (2022). Advances in Electronic Nano-biosensors and New Frontiers in Bioengineering. In 2022 International Electron Devices Meeting, IEDM 2022 (pp. 1711-1714). (Technical Digest - International Electron Devices Meeting, IEDM; Vol. 2022-December). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/IEDM45625.2022.10019512
Pan, C., Gabrys, R., Liu, X., Colbourn, C., & Milenkovic, O. (2022). Balanced and Swap-Robust Trades for Dynamical Distributed Storage. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 2385-2390). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834794
Li, Y., Zhu, R., Yeh, M., & Qu, A. (2022). Dermoscopic Image Classification with Neural Style Transfer. Journal of Computational and Graphical Statistics, 31(4), 1318-1331. https://doi.org/10.1080/10618600.2022.2061496
Wu, A., Garimella, A., Subramanyam, R., & Ahsen, M. (2022). Disaster Management Through Digital Platforms: Online Crowdfunding Communities Respond to the COVID-19 Pandemic. In T. X. Bui (Ed.), Proceedings of the 55th Annual Hawaii International Conference on System Sciences, HICSS 2022 (pp. 4402-4411). (Proceedings of the Annual Hawaii International Conference on System Sciences; Vol. 2022-January). IEEE Computer Society.
Lu, T., Qi, F., Ner, J., Feng, T., Cunningham, B., & Peng, L. (2022). GeauxTrace: A Scalable Privacy-Protecting Contact Tracing App Design Using Blockchain. In Proceedings - 2022 IEEE/ACM 9th International Conference on Big Data Computing, Applications and Technologies, BDCAT 2022 (pp. 100-109). (Proceedings - 2022 IEEE/ACM 9th International Conference on Big Data Computing, Applications and Technologies, BDCAT 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BDCAT56447.2022.00020
Xiong, X., Tasan, I., Yang, C., Zhang, M., Hernandez Gonzalez, G. A., Liu, S., Chaturvedi, P., Belmont, A. S., & Zhao, H. (Accepted/In press). Imaging Method Using CRISPR/dCas9 and Engineered gRNA Scaffolds Can Perturb Replication Timing at the HSPA1 Locus. ACS synthetic biology. https://doi.org/10.1021/acssynbio.2c00433
Applegate, C. C., Deng, H., Kleszynski, B. L., Cross, T. W. L., Konopka, C. J., Dobrucki, L. W., Nelson, E. R., Wallig, M. A., Smith, A. M., & Swanson, K. S. (2022). Impact of administration route on nanocarrier biodistribution in a murine colitis model. Journal of Experimental Nanoscience, 17(1), 599-616. https://doi.org/10.1080/17458080.2022.2134563
Wen, Y., Rashid, F., Fazal, Z., Singh, R., Spinella, M. J., & Irudayaraj, J. (2022). Nephrotoxicity of perfluorooctane sulfonate (PFOS) - effect on transcription and epigenetic factors. Environmental Epigenetics, 8(1), [dvac010]. https://doi.org/10.1093/eep/dvac010
Xiong, Y., Huang, Q., Canady, T. D., Barya, P., Liu, S., Arogundade, O. H., Race, C. M., Wang, X., Zhou, L., Wang, X., Kohli, M., Smith, A. M., & Cunningham, B. T. (2022). Photonic Crystal Enhanced Emission and Blinking Suppression for Single Quantum Dot Digital Resolution Biosensing of Cancer-associated miRNA Biomarkers. In CLEO: Science and Innovations, S and I 2022 [JTh6A.2] (Optics InfoBase Conference Papers). Optica Publishing Group (formerly OSA).
Xiong, Y., Huang, Q., Canady, T. D., Barya, P., Liu, S., Arogundade, O. H., Race, C. M., Wang, X., Zhou, L., Wang, X., Kohli, M., Smith, A. M., & Cunningham, B. T. (2022). Photonic Crystal Enhanced Emission and Blinking Suppression for Single Quantum Dot Digital Resolution Biosensing of Cancer-associated miRNA Biomarkers. In 2022 Conference on Lasers and Electro-Optics, CLEO 2022 - Proceedings [JTh6A.2] (2022 Conference on Lasers and Electro-Optics, CLEO 2022 - Proceedings). Institute of Electrical and Electronics Engineers Inc..
Xiong, Y., Huang, Q., Canady, T. D., Barya, P., Liu, S., Arogundade, O. H., Race, C. M., Che, C., Wang, X., Zhou, L., Igarashi, A., Wang, X., Kohli, M., Smith, A. M., & Cunningham, B. T. (2022). Photonic Crystal Enhanced Quantum Dot Biosensor for Cancer-associated miRNA Detection. In 2022 IEEE Sensors, SENSORS 2022 - Conference Proceedings (Proceedings of IEEE Sensors; Vol. 2022-October). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SENSORS52175.2022.9967032
Li, N., Wang, X., Tibbs, J., Canady, T. D., Huang, Q., Fried, G. A., Wang, X., Cooper, L., Rong, L., Lu, Y., & Cunningham, B. T. (2022). Photonic resonator interferometric scattering microscopy. In S. M. Garcia-Blanco, & P. Cheben (Eds.), Integrated Optics: Devices, Materials, and Technologies XXVI [120040K] (Proceedings of SPIE - The International Society for Optical Engineering; Vol. 12004). SPIE. https://doi.org/10.1117/12.2606436
Mitra, C., Yoo, J. Y., Madak-Erdogan, Z., & Soliman, A. S. (2022). Spatial Analysis of Tumor Heterogeneity Using Machine Learning Techniques. In Proceedings - 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2022 (pp. 781-786). (Proceedings - 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/MASS56207.2022.00123
Han, Z., Vaidya, R. M., Arogundade, O. H., Ma, L., Zahid, M. U., Sarkar, S., Kuo, C. W., Selvin, P. R., & Smith, A. M. (Accepted/In press). Structural Design of Multidentate Copolymers as Compact Quantum Dot Coatings for Live-Cell Single-Particle Imaging. Chemistry of Materials. https://doi.org/10.1021/acs.chemmater.2c00498
Golm, R., Nahvi, M., Gabrys, R., & Milenkovic, O. (2022). The Gapped k-Deck Problem. In 2022 IEEE International Symposium on Information Theory, ISIT 2022 (pp. 49-54). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2022-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT50566.2022.9834537
Han, W., Wang, X., Ahsen, M. E., & Wattal, S. (2022). The Societal Impact of Sharing Economy Platform Self-Regulations-An Empirical Investigation. Information Systems Research, 33(4), 1303-1323. https://doi.org/10.1287/isre.2021.1044
Cavalcanti, J. V. J., Selting, K. A., Ngo, M. T., Hoang, C. K. T., Schaeffer, D. J., Fan, T. M., Harley, B. A. C., & Phillips, H. (2022). Three-dimensional hydrogel culture systems support growth and determination of chemosensitivity of feline sarcoma and carcinoma cell lines. American journal of veterinary research, 83(6). https://doi.org/10.2460/ajvr.21.10.0157
Chauhan, N., Wang, W., Lee, H. K., Xiong, Y., Zhang, T., Magazine, N., Peng, L., Zhou, L., Huang, W., Wang, X., & Cunningham, B. T. (2022). V-Pods: Rapid, Sensitive Detection of Intact SARS-CoV-2 using DNA Nets and a Smartphone-Linked Fluorimeter. In B. M. Cullum, D. Kiehl, & E. S. McLamore (Eds.), Smart Biomedical and Physiological Sensor Technology XIX [1212306] (Proceedings of SPIE - The International Society for Optical Engineering; Vol. 12123). SPIE. https://doi.org/10.1117/12.2617550