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Research Areas

Center for Genomic Diagnostics: Publications

King, W. P., Amos, J., Azer, M., Baker, D., Bashir, R., Best, C., Bethke, E., Boppart, S. A., Bralts, E., Corey, R. M., Dietkus, R., Durack, G., Elbel, S., Elliott, G., Fava, J., Goldenfeld, N., Goldstein, M. H., Hayes, C., Herndon, N., ... Wooldridge, A. R. (2020). Emergency ventilator for COVID-19. PloS one15(12), e0244963. [e0244963].

Goswami, N., He, Y. R., Deng, Y-H., Oh, C., Sobh, N., Valera, E., Bashir, R., Ismail, N., Kong, H. J., Nguyen, T. H., Best-Popescu, C., & Popescu, G. (2020). Rapid SARS-CoV-2 Detection and Classification Using Phase Imaging with Computational Specificity. (bioRxiv). Cold Spring Harbor Laboratory Press.

Young, T. J., Cui, Y., Pfeffer, C., Hobbs, E., Liu, W., Irudayaraj, J., & Kirchmaier, A. L. (2020). CAF-1 and Rtt101p function within the replication-coupled chromatin assembly network to promote H4 K16ac, preventing ectopic silencing. PLoS genetics16(12), [e1009226].

Wang, Y., Counihan, M. J., Lin, J. W., Rodríguez-López, J., Yang, H., & Lu, Y. (2020). Quantitative Analysis of DNA-Mediated Formation of Metal Nanocrystals. Journal of the American Chemical Society142(48), 20368-20379.

Yazdi, S. M. H. T., Gabrys, R., & Milenkovic, O. (2020). Author Correction: Portable and Error-Free DNA-Based Data Storage (Scientific Reports, (2017), 7, 1, (5011), 10.1038/s41598-017-05188-1). Scientific reports10(1), [7026].

Tabatabaei, S. K., Wang, B., Athreya, N. B. M., Enghiad, B., Hernandez, A. G., Fields, C. J., Leburton, J. P., Soloveichik, D., Zhao, H., & Milenkovic, O. (2020). DNA punch cards for storing data on native DNA sequences via enzymatic nicking. Nature communications11(1), [1742].

Smith, B. P., Auvil, L. S., Welge, M., Bushell, C. B., Bhargava, R., Elango, N., Johnson, K., & Madak-Erdogan, Z. (2020). Identification of early liver toxicity gene biomarkers using comparative supervised machine learning. Scientific reports10(1), [19128].

Athreya, N., Milenkovic, O., & Leburton, J. P. (2020). Interaction dynamics and site-specific electronic recognition of DNA-nicks with 2D solid-state nanopores. npj 2D Materials and Applications4(1), [32].

Liu, F., Mao, J., Kong, W., Hua, Q., Feng, Y., Bashir, R., & Lu, T. (2020). Interaction variability shapes succession of synthetic microbial ecosystems. Nature communications11(1), [309].

Pagan-Diaz, G. J., Drnevich, J., Ramos-Cruz, K. P., Sam, R., Sengupta, P., & Bashir, R. (2020). Modulating electrophysiology of motor neural networks via optogenetic stimulation during neurogenesis and synaptogenesis. Scientific reports10(1), [12460].

Adeniba, O. O., Corbin, E. A., Ganguli, A., Kim, Y., & Bashir, R. (2020). Simultaneous time-varying viscosity, elasticity, and mass measurements of single adherent cancer cells across cell cycle. Scientific reports10(1), [12803].

Cazier, J-B., Mainzer, L. S., Ge, W., Žurauskienė, J., & Madak-Erdogan, Z. (2020). Health disparities research is enabled by data diversity but requires much tighter integration of collaborative efforts. Journal of Global Health10(2), 020351.

Salapa, J., Bushman, A., Lowe, K., & Irudayaraj, J. (2020). Nano drug delivery systems in upper gastrointestinal cancer therapy. Nano Convergence7(1), [38].

Saba, C. F., Clifford, C., Burgess, K., Phillips, B., Vail, D., Wright, Z., Curran, K., Fan, T., Elmslie, R., Post, G., & Thamm, D. (2020). Rabacfosadine for naïve canine intermediate to large cell lymphoma: Efficacy and adverse event profile across three prospective clinical trials. Veterinary and comparative oncology18(4), 763-769.

Jabeen, M., Fayyaz, M., & Irudayaraj, J. (2020). Epigenetic Modifications, and Alterations in Cell Cycle and Apoptosis Pathway in A549 Lung Carcinoma Cell Line upon Exposure to Perfluoroalkyl Substances. Toxics8(4), [112].

Ganguli, A., Mostafa, A., Berger, J., Stewart de Ramirez, S. A., Baltaji, A., Roth, K., Aamir, M., Aedma, S., Mady, M., Mahajan, P., Sathe, S., Johnson, M., White, K., Kumar, J., Valera, E., & Bashir, R. (2020). RT-LAMP assay for ultra-sensitive detection of SARS-CoV-2 in saliva and VTM clinical samples. (medRxiv). Cold Spring Harbor Laboratory Press.

Ganguli, A., Mostafa, A., Berger, J., de Ramirez, S. A. S., Baltaji, A., Roth, K., Aamir, M., Aedma, S., Mady, M., Mahajan, P., Sathe, S., Johnson, M., White, K., Kumar, J., Valera Cano, E. A., & Bashir, R. (2020). RT-LAMP assay for ultra-sensitive detection of SARS-CoV-2 in saliva and VTM clinical samples. Unknown Journal

Prabhu, S., Deng, H., Cross, T-W. L., Shahoei, S. H., Konopka, C. J., Gonzalez Medina, N., Applegate, C. C., Wallig, M. A., Dobrucki, L. W., Nelson, E. R., Smith, A. M., & Swanson, K. S. (2020). Nanocarriers targeting adipose macrophages increase glucocorticoid anti-inflammatory potency to ameliorate metabolic dysfunction. Biomaterials Science

Liu, X., & Milenkovic, O. (2020). Finding the second-best candidate under the mallows model. Unknown Journal.

Jena, S., Damayanti, N. P., Tan, J., Pratt, E. D., Irudayaraj, J. M. K., & Parker, L. L. (2020). Multiplexable fluorescence lifetime imaging (FLIM) probes for Abl and Src-family kinases. Chemical Communications56(87), 13409-13412.

Gabrys, R., Pattabiraman, S., Rana, V., Ribeiro, J., Cheraghchi, M., Guruswami, V., & Milenkovic, O. (2020). AC-DC: Amplification Curve Diagnostics for Covid-19 Group Testing. (arXiv:2011.05223).

Eagleman, D. E., Zhu, J., Liu, D. C., Seimetz, J., Kalsotra, A., & Tsai, N. P. (2020). Unbiased Proteomic Screening Identifies a Novel Role for the E3 Ubiquitin Ligase Nedd4-2 in Translational Suppression During ER Stress. Journal of Neurochemistry

Chee, Y. M., Colbourn, C. J., Dau, H., Gabrys, R., Ling, A. C. H., Lusi, D., & Milenkovic, O. (2020). Access balancing in storage systems by labeling partial Steiner systems. Designs, Codes, and Cryptography88(11), 2361-2376.

SUN, QINYU., HAO, QINYU., LIN, YO. CHUEN., SONG, YOU. JIN., BANGRU, SUSHANT., ARIF, WAQAR., TRIPATHI, VIDISHA., ZHANG, YANG., CHO, JUNG. HYUN., FREIER, SUSAN. M., JENKINS, LISA. M., MA, JIAN., YOON, JE. HYUN., KALSOTRA, AUINASH., LAL, ASHISH., PRASANTH, SUPRIYA. G., & PRASANTH, KANNANGANATTU. V. (2020). Antagonism between splicing and microprocessor complex dictates the serum-induced processing of lnc-MIRHG for efficient cell cycle reentry. RNA26(11), 1603-1620.

DREAM SCTC Consortium, Tanevski, J., Nguyen, T., Truong, B., Karaiskos, N., Ahsen, M. E., Zhang, X., Shu, C., Xu, K., Liang, X., Hu, Y., Pham, H. V., Xiaomei, L., Le, T. D., Tarca, A. L., Bhatti, G., Romero, R., Karathanasis, N., Loher, P., ... Meyer, P. (2020). Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data. Life Science Alliance3(11), [e202000867].

Aloysius Dhivya, M., Aberami, S., Nikhalashree, S., Biswas, J., Liu, W., Irudayaraj, J., Sulochana, K. N., Coral, K., & Bharathi Devi, S. R. (2020). Copper mediates mitochondrial biogenesis in retinal pigment epithelial cells. Biochimica et Biophysica Acta - Molecular Basis of Disease1866(10), [165843].

Cheraghchi, M., Gabrys, R., Milenkovic, O., & Ribeiro, J. (2020). Coded Trace Reconstruction. IEEE Transactions on Information Theory66(10), 6084-6103. [9097932].

Shinn, L. M., Li, Y., Mansharamani, A., Auvil, L. S., Welge, M. E., Bushell, C., Khan, N. A., Charron, C. S., Novotny, J. A., Baer, D. J., Zhu, R., & Holscher, H. D. (2020). Fecal Bacteria as Biomarkers for Predicting Food Intake in Healthy Adults. The Journal of nutrition

Xue, C., Zhang, S., Yu, X., Hu, S., Lu, Y., & Wu, Z. S. (2020). Periodically Ordered, Nuclease-Resistant DNA Nanowires Decorated with Cell-Specific Aptamers as Selective Theranostic Agents. Angewandte Chemie - International Edition59(40), 17540-17547.

Ganguli, A., Mostafa, A., Berger, J., Aydin, M. Y., Sun, F., Stewart de Ramirez, S. A., Valera, E., Cunningham, B. T., King, W. P., & Bashir, R. (2020). Rapid Isothermal Amplification and Portable Detection System for SARS-CoV-2. Proceedings of the National Academy of Sciences117(37), 22727-22735. [202014739].

Ballance, W. C., Karthikeyan, V., Oh, I., Qin, E. C., Seo, Y., Spearman-White, T., Bashir, R., Hu, Y., Phillips, H., & Kong, H. (2020). Preoperative vascular surgery model using a single polymer tough hydrogel with controllable elastic moduli. Soft Matter16(34), 8057-8068.

Park, I., Lim, J. W., Kim, S. H., Choi, S., Ko, K. H., Son, M. G., Chang, W. J., Yoon, Y. R., Yang, S., Key, J., Kim, Y. S., Eom, K., Bashir, R., Lee, S. Y., & Lee, S. W. (2020). Variable Membrane Dielectric Polarization Characteristic in Individual Live Cells. Journal of Physical Chemistry Letters11(17), 7197-7203.

Wang, J., Park, J., Zhang, X., Park, I., Kilicarslan, E., Kim, Y., Bashir, R., & Gazzola, M. (2020). Computationally assisted design and selection of maneuverable biological walking machines. Unknown Journal

Wen, Y., Chen, J., Li, J., Arif, W., Kalsotra, A., & Irudayaraj, J. (2020). Effect of PFOA on DNA Methylation and Alternative Splicing in Mouse Liver. Toxicology Letters329, 38-46.

Wen, Y., Rattan, S., Flaws, J. A., & Irudayaraj, J. (2020). Multi and transgenerational epigenetic effects of di-(2-ethylhexyl) phthalate (DEHP) in liver. Toxicology and Applied Pharmacology402, [115123].

Cotul, E. K., Zuo, Q., Santaliz-Casiano, A., Imir, O. B., Mogol, A. N., Tunc, E., Duong, K., Lee, J. K., Ramesh, R., Odukoya, E., Kesavadas, M. P., Ziogaite, M., Smith, B. P., Mao, C., Shapiro, D. J., Park, B. H., Katzenellenbogen, B. S., Daly, D., Aranda, E., ... Madak-Erdogan, Z. (2020). Combined Targeting of Estrogen Receptor Alpha and Exportin 1 in Metastatic Breast Cancers. Cancers12(9), 1-22. [2397].

Lim, J. Y. C., Yu, Y., Jin, G., Li, K., Lu, Y., Xie, J., & Tan, Y. N. (2020). Establishing empirical design rules of nucleic acid templates for the synthesis of silver nanoclusters with tunable photoluminescence and functionalities towards targeted bioimaging applications. Nanoscale Advances2(9), 3921-3932.

Ren, W., Cabush, A., & Irudayaraj, J. (2020). Checkpoint enrichment for sensitive detection of target bacteria from large volume of food matrices. Analytica Chimica Acta1127, 114-121.

Rashid, F., Ahmad, S., & Irudayaraj, J. M. K. (2020). Effect of Perfluorooctanoic Acid on the Epigenetic and Tight Junction Genes of the Mouse Intestine. Toxics8(3), [64].

Huang, Q., Li, N., Zhang, H., Che, C., Sun, F., Xiong, Y., Canady, T. D., & Cunningham, B. T. (2020). Critical Review: Digital resolution biomolecular sensing for diagnostics and life science research. Lab on a chip20(16), 2816-2840.

Eve, A. A., Liu, X., Wang, Y., Miller, M. J., Jeffery, E. H., & Madak-Erdogan, Z. (2020). Biomarkers of Broccoli Consumption: Implications for Glutathione Metabolism and Liver Health. Nutrients12(9), [2514].

Huang, Q., Canady, T. D., Gupta, R., Li, N., Singamaneni, S., & Cunningham, B. T. (2020). Enhanced Plasmonic Photocatalysis through Synergistic Plasmonic-Photonic Hybridization. ACS Photonics7(8), 1994-2001.

Mirts, E. N., Dikanov, S. A., Jose, A., Solomon, E. I., & Lu, Y. (2020). A Binuclear CuACenter Designed in an All α-Helical Protein Scaffold. Journal of the American Chemical Society142(32), 13779-13794.

Sonam, S., Bangru, S., Perry, K. J., Kalsotra, A., & Henry, J. J. (2020). Single-cell analyses of the corneal epithelium: Unique cell types and gene expression profiles. Unknown Journal

Yu, S. S., Li, J. J., Cui, C., Tian, S., Chen, J. J., Yu, H. Q., Hou, C., Nilges, M. J., & Lu, Y. (2020). Structural Basis for a Quadratic Relationship between Electronic Absorption and Electronic Paramagnetic Resonance Parameters of Type 1 Copper Proteins. Inorganic Chemistry59(15), 10620-10627.

Zuo, Q., & Madak Erdogan, Z. (2020). The Window of Vulnerability for Uterus. Endocrinology161(8).

Wu, Y., Yang, Z., & Lu, Y. (2020). Photocaged functional nucleic acids for spatiotemporal imaging in biology. Current Opinion in Chemical Biology57, 95-104.

Dau, H., Xinh, D. T., Kiah, H. M., Luong, T. T., & Milenkovic, O. (2020). Repairing Reed-Solomon codes via subspace polynomials. Unknown Journal.

Le, P., Vaidya, R., Smith, L. D., Han, Z., Zahid, M. U., Winter, J., Sarkar, S., Chung, H. J., Perez-Pinera, P., Selvin, P. R., & Smith, A. M. (2020). Optimizing Quantum Dot Probe Size for Single-Receptor Imaging. ACS Nano14(7), 8343-8358.

Cowell, T. W., Valera, E., Jankelow, A., Park, J., Schrader, A. W., Ding, R., Berger, J., Bashir, R., & Han, H. S. (2020). Rapid, multiplexed detection of biomolecules using electrically distinct hydrogel beads. Lab on a chip20(13), 2274-2283.

Ganguli, A., Faramarzi, V., Mostafa, A., Hwang, M. T., You, S., & Bashir, R. (2020). High Sensitivity Graphene Field Effect Transistor-Based Detection of DNA Amplification. Advanced Functional Materials30(28), [2001031].

Srivastava, I., Khan, M. S., Dighe, K., Alafeef, M., Wang, Z., Banerjee, T., Ghonge, T., Grove, L. M., Bashir, R., & Pan, D. (2020). On-Chip Electrical Monitoring of Real-Time “Soft” and “Hard” Protein Corona Formation on Carbon Nanoparticles. Small Methods4(7), [2000099].

Liu, W., & Irudayaraj, J. (2020). Perfluorooctanoic acid (PFOA) exposure inhibits DNA methyltransferase activities and alters constitutive heterochromatin organization. Food and Chemical Toxicology141, [111358].

Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., Wang, L., Brooke, C. B., Burke, M. D., Fan, T. M., & Hergenrother, P. J. (2020). Saliva-based molecular testing for SARS-CoV-2 that bypasses RNA extraction. Unknown Journal

Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., Wang, L., Brooke, C. B., Burke, M., Fan, T. M., & Hergenrother, P. (2020). Saliva-Based Molecular Testing for SARS-CoV-2 that Bypasses RNA Extraction. (bioRxiv). Cold Spring Harbor Laboratory Press.

Kaufman, C. D., Liu, S. C., Cvetkovic, C., Lee, C. A., Naseri Kouzehgarani, G., Gillette, R., Bashir, R., & Gillette, M. U. (2020). Emergence of functional neuromuscular junctions in an engineered, multicellular spinal cord-muscle bioactuator. Bioengineering4(2), [026104].

Feng, Z., Lin, L., Zhu, R., & Zhu, L. (2020). Nonparametric variable selection and its application to additive models. Annals of the Institute of Statistical Mathematics72(3), 827-854.

Berger, J., Valera, E., Jankelow, A., Garcia, C., Akhand, M., Heredia, J., Ghonge, T., Liu, C., Font-Bartumeus, V., Oshana, G., Tiao, J., & Bashir, R. (2020). Simultaneous electrical detection of IL-6 and PCT using a microfluidic biochip platform. Biomedical microdevices22(2), [36].

Laws, M. J., Ziegler, Y., Shahoei, S. H., Dey, P., Kim, S. H., Yasuda, M., Park, B. H., Nettles, K. W., Katzenellenbogen, J. A., Nelson, E. R., & Katzenellenbogen, B. S. (2020). Suppression of breast cancer metastasis and extension of survival by a new antiestrogen in a preclinical model driven by mutant estrogen receptors. Breast Cancer Research and Treatment181(2), 297-307.

Chee, Y. M., Colbourn, C. J., Dau, H., Gabrys, R., Ling, A. C. H., Lusi, D., & Milenkovic, O. (2020). Access Balancing in Storage Systems by Labeling Partial Steiner Systems. In 2020 IEEE International Symposium on Information Theory, ISIT 2020 - Proceedings (pp. 566-570). [9174154] (IEEE International Symposium on Information Theory - Proceedings; Vol. 2020-June). Institute of Electrical and Electronics Engineers Inc..

Snapp, P., Heiranian, M., Hwang, M. T., Bashir, R., Aluru, N. R., & Nam, S. W. (2020). Current understanding and emerging applications of 3D crumpling mediated 2D material-liquid interactions. Current Opinion in Solid State and Materials Science24(3), [100836].

Wen, Y., Mirji, N., & Irudayaraj, J. (2020). Epigenetic toxicity of PFOA and GenX in HepG2 cells and their role in lipid metabolism. Toxicology in Vitro65, [104797].

Gabrys, R., Pattabiraman, S., & Milenkovic, O. (2020). Mass Error-Correction Codes for Polymer-Based Data Storage. In 2020 IEEE International Symposium on Information Theory, ISIT 2020 - Proceedings (pp. 25-30). [9174404] (IEEE International Symposium on Information Theory - Proceedings; Vol. 2020-June). Institute of Electrical and Electronics Engineers Inc..

Sun, F., Ganguli, A., Nguyen, J., Brisbin, R., Shanmugam, K., Hirschberg, D. L., Wheeler, M. B., Bashir, R., Nash, D. M., & Cunningham, B. T. (2020). Smartphone-Based Multiplex 30-minute Nucleic Acid Test of Live Virus from Nasal Swab Extract. Lab on a chip20(9), 1621-1627.

Maxwell, E. A., Phillips, H., Clark-Price, S. C., Vieson, M. D., Selmic, L. E., Schaeffer, D. J., & Fan, T. M. (2020). Pharmacokinetics of platinum and safety evaluation of carboplatin-impregnated calcium sulfate hemihydrate beads after implantation in healthy cats. Veterinary Surgery49(4), 748-757.

Pan, C., Hossein Tabatabaei Yazdi, S. M., Kasra Tabatabaei, S., Hernandez, A. G., Schroeder, C., & Milenkovic, O. (2020). Image Processing in DNA. In 2020 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2020 - Proceedings (pp. 8831-8835). [9054262] (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; Vol. 2020-May). Institute of Electrical and Electronics Engineers Inc..

Li, P., Puleo, G. J., & Milenkovic, O. (2020). Motif and Hypergraph Correlation Clustering. IEEE Transactions on Information Theory66(5), 3065-3078. [8830473].

Gamage, A., Chien, E., Peng, J., & Milenkovic, O. (2020). Multi-MotifGAN (MMGAN): Motif-Targeted Graph Generation and Prediction. In 2020 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2020 - Proceedings (pp. 4182-4186). [9053451] (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; Vol. 2020-May). Institute of Electrical and Electronics Engineers Inc..

Zhao Ruoqing, Y. Q., Zhu, R., Chen, G., & Zheng, Y. (2020). Constructing dynamic treatment regimes with shared parameters for censored data. Statistics in Medicine39(9), 1250-1263.

Rana, V., Chien, E., Peng, J., & Milenkovic, O. (2020). How fast does the SARS-Cov-2 virus really mutate in heterogeneous populations? Unknown Journal

Rana, V., Chien, E., Peng, J., & Milenkovic, O. (2020). Small-sample estimation of the mutational support and the distribution of mutations in the SARS-Cov-2 genome. (medRxiv). Cold Spring Harbor Laboratory Press.

Srivastava, I., Misra, S. K., Bangru, S., Boateng, K. A., Soares, J. A. N. T., Schwartz-Duval, A. S., Kalsotra, A., & Pan, D. (2020). Complementary Oligonucleotide Conjugated Multicolor Carbon Dots for Intracellular Recognition of Biological Events. ACS Applied Materials and Interfaces12(14), 16137-16149.

Peng, J., Chembazhi, U. V., Bangru, S., Traniello, I. M., Kalsotra, A., Ochoa, I., & Hernaez, M. (2020). SimiC: A Single Cell Gene Regulatory Network Inference method with Similarity Constraints. Unknown Journal

Hyun, J., Sun, Z., Ahmadi, A. R., Bangru, S., Chembazhi, U. V., Du, K., Chen, T., Tsukamoto, H., Rusyn, I., Kalsotra, A., & Diehl, A. M. (2020). Epithelial splicing regulatory protein 2-mediated alternative splicing reprograms hepatocytes in severe alcoholic hepatitis. Journal of Clinical Investigation130(4), 2129-2145.

Li, P., He, N., & Milenkovic, O. (2020). Quadratic decomposable submodular function minimization: Theory and practice. Journal of Machine Learning Research21.

Bangru, S., & Kalsotra, A. (2020). Cellular and molecular basis of liver regeneration. Seminars in Cell and Developmental Biology100, 74-87.

Hwang, M. T., Heiranian, M., Kim, Y., You, S., Leem, J., Taqieddin, A., Faramarzi, V., Jing, Y., Park, I., van der Zande, A. M., Nam, S., Aluru, N. R., & Bashir, R. (2020). Ultrasensitive detection of nucleic acids using deformed graphene channel field effect biosensors. Nature communications11(1), [1543].

Han, Z., Sarkar, S., & Smith, A. M. (2020). Zwitterion and Oligo(ethylene glycol) Synergy Minimizes Nonspecific Binding of Compact Quantum Dots. ACS Nano14(3), 3227-3241.

Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J., & Kalsotra, A. (2020). Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy. Developmental cell52(6), 748-763.e6.

Smith, L. D., Willard, M. C., Smith, J. P., & Cunningham, B. T. (2020). Development of a Linker-Mediated Immunoassay Using Chemically Transitioned Nanosensors. Analytical chemistry92(5), 3627-3635.

Pattabiraman, S., Gabrys, R., & Milenkovic, O. (2020). Coding for Polymer-Based Data Storage. Unknown Journal.

DM DREAM Consortium (2020). Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms. JAMA network open3(3), e200265.

Aydin, O., Passaro, A. P., Elhebeary, M., Pagan-Diaz, G. J., Fan, A., Nuethong, S., Bashir, R., Stice, S. L., & Saif, M. T. A. (2020). Development of 3D neuromuscular bioactuators. APL Bioengineering4(1), [016107].

Tunc, E., Eve, A. A., & Madak-Erdogan, Z. (2020). Coronary Microvascular Dysfunction and Estrogen Receptor Signaling. Trends in Endocrinology and Metabolism31(3), 228-238.

Zhang, J. J., Lan, T., & Lu, Y. (2020). Translating in vitro diagnostics from centralized laboratories to point-of-care locations using commercially-available handheld meters. TrAC - Trends in Analytical Chemistry124, [115782].

Smith, L. D., Liu, Y., Zahid, M. U., Canady, T. D., Wang, L., Kohli, M., Cunningham, B. T., & Smith, A. M. (2020). High-Fidelity Single Molecule Quantification in a Flow Cytometer Using Multiparametric Optical Analysis. ACS Nano14(2), 2324-2335.

Peterson, R. D., Wilund, K., Cunningham, B. T., & Andrade, J. (2020). Reply to Comments: Comparison of Methods Study between a Photonic Crystal Biosensor and Certified ELISA to Measure Biomarkers of Iron Deficiency in Chronic Kidney Disease Patients. Sensors (Basel, Switzerland)20(4), [1149].

Sarkar, S., Le, P., Geng, J., Liu, Y., Han, Z., Zahid, M. U., Nall, D., Youn, Y., Selvin, P. R., & Smith, A. M. (2020). Short-Wave Infrared Quantum Dots with Compact Sizes as Molecular Probes for Fluorescence Microscopy. Journal of the American Chemical Society142(7), 3449-3462.

Vega-Vásquez, P., Mosier, N. S., & Irudayaraj, J. (2020). Nanoscale Drug Delivery Systems: From Medicine to Agriculture. Frontiers in Bioengineering and Biotechnology8, [79].

Bai, Y., Xing, H., Bai, Y., Tan, L. H., Hwang, K., Li, J., Lu, Y., & Zimmerman, S. C. (2020). Independent control over size, valence, and elemental composition in the synthesis of DNA-nanoparticle conjugates. Chemical Science11(6), 1564-1572.

Liu, W., Biton, E., Pathania, A., Matityahu, A., Irudayaraj, J., & Onn, I. (2020). Monomeric cohesin state revealed by live-cell single-molecule spectroscopy. EMBO Reports21(2), [e48211].

Oktay, K., Santaliz-Casiano, A., Patel, M., Marino, N., Storniolo, A. M. V., Torun, H., Acar, B., & Madak Erdogan, Z. (2020). A Computational Statistics Approach to Evaluate Blood Biomarkers for Breast Cancer Risk Stratification. Hormones and Cancer11(1), 17-33.

Fan, T. M., Roberts, R. D., & Lizardo, M. M. (2020). Understanding and Modeling Metastasis Biology to Improve Therapeutic Strategies for Combating Osteosarcoma Progression. Frontiers in Oncology10, [13].

Deng, H., Konopka, C. J., Cross, T. W. L., Swanson, K. S., Dobrucki, L. W., & Smith, A. M. (2020). Multimodal Nanocarrier Probes Reveal Superior Biodistribution Quantification by Isotopic Analysis over Fluorescence. ACS Nano14(1), 509-523.

Xiong, M., Yang, Z., Lake, R. J., Li, J., Hong, S., Fan, H., Zhang, X. B., & Lu, Y. (2020). DNAzyme-Mediated Genetically Encoded Sensors for Ratiometric Imaging of Metal Ions in Living Cells. Angewandte Chemie - International Edition59(5), 1891-1896.

Cui, Y., Kosorok, M. R., Wager, S., & Zhu, R. (2020). Estimating heterogeneous treatment effects with right-censored data via causal survival forests. Unknown Journal.

Ouyang, C., Zhang, S., Xue, C., Yu, X., Xu, H., Wang, Z., Lu, Y., & Wu, Z. S. (2020). Precision-Guided Missile-Like DNA Nanostructure Containing Warhead and Guidance Control for Aptamer-Based Targeted Drug Delivery into Cancer Cells in Vitro and in Vivo. Journal of the American Chemical Society142(3), 1265-1277.

Gabrys, R., Pattabiraman, S., & Milenkovic, O. (2020). Mass Error-Correction Codes for Polymer-Based Data Storage. Unknown Journal.

Agarwal, A., Milenkovic, O., Pattabiraman, S., & Ribeiro, J. (2020). Group testing with runlength constraints for topological molecular storage. Unknown Journal.

Xiong, Y., Zhang, J., Yang, Z., Mou, Q., Ma, Y., Xiong, Y., & Lu, Y. (2020). Functional DNA Regulated CRISPR-Cas12a Sensors for Point-of-Care Diagnostics of Non-Nucleic-Acid Targets. Journal of the American Chemical Society142(1), 207-213.

Miao, R., Badger, T. C., Groesch, K., Diaz-Sylvester, P. L., Wilson, T., Ghareeb, A., Martin, J. A., Cregger, M., Welge, M., Bushell, C., Auvil, L., Zhu, R., Brard, L., & Braundmeier-Fleming, A. (2020). Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer. PloS one15(1), [e0227707].

Kim, Y., Pagan-Diaz, G., Gapinske, L., Kim, Y., Suh, J., Solomon, E., Harris, J. F., Nam, S. W., & Bashir, R. (Accepted/In press). Integration of Graphene Electrodes with 3D Skeletal Muscle Tissue Models. Advanced Healthcare Materials, [1901137].

Lin, Y. W., Ahsen, M. E., Shaw, M. J., & Seshadri, S. (2020). The impacts of patients' sentiment trajectory features on their willingness to share in online support groups. In 40th International Conference on Information Systems, ICIS 2019 (40th International Conference on Information Systems, ICIS 2019). Association for Information Systems.

Rashid, F., Ramakrishnan, A., Fields, C., & Irudayaraj, J. (2020). Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues. Toxicology Reports7, 125-132.

Hong, S., Zhang, X., Lake, R. J., Pawel, G. T., Guo, Z., Pei, R., & Lu, Y. (2020). A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells. Chemical Science11(3), 713-720.

Le, P., Chitoor, S., Tu, C., Lim, S. J., & Smith, A. M. (2020). Compact quantum dots for quantitative cytology. In Methods in Molecular Biology (pp. 147-158). (Methods in Molecular Biology; Vol. 2064). Humana Press Inc..

Zhang, Y., Shi, W., Park, I., Kim, S., Brenden, C., Iyer, H., Jha, P., Bashir, R., & Vlasov, Y. (2020). Droplet-assisted phase separation by integrated silicon electrospray nano-emitter for neurochemical sensing. In MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences (pp. 110-111). (MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences). Chemical and Biological Microsystems Society.

Cowell, T. W., Valera, E., Jankelow, A., Park, J., Schrader, A. W., Ding, R., Berger, J., Bashir, R., & Han, H. S. (2020). Rapid, Multiplexed Electrical Detection of Biomolecules using Electrically Distinct Hydrogel Beads. Lab on a Chip20, 2274-2283.

Gabrys, R., Dau, H. S., Colbourn, C. J., & Milenkovic, O. (2020). Set-codes with small intersections and small discrepancies. SIAM Journal on Discrete Mathematics34(2), 1148-1171.

Le, P., Lim, S. J., Baculis, B. C., Chung, H. J., Kilian, K. A., & Smith, A. M. (2019). Counting growth factors in single cells with infrared quantum dots to measure discrete stimulation distributions. Nature communications, 10(1), [909].

Liu, K., Pan, C., Kuhn, A., Nievergelt, A. P., Fantner, G. E., Milenkovic, O., & Radenovic, A. (2019). Detecting topological variations of DNA at single-molecule level. Nature communications, 10(1), [3].

Taneja, I., Reddy, B., Damhorst, G., Zhao, S. D., Hassan, U., Price, Z., ... Zhu, R. (2019). Publisher Correction: Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis (Scientific Reports, (2017), 7, 1, (10800), 10.1038/s41598-017-09766-1). Scientific reports, 9(1), [17419].

Zaouri, N., Cui, Z., Peinetti, A. S., Lu, Y., & Hong, P. Y. (2019). DNAzyme-based biosensor as a rapid and accurate verification tool to complement simultaneous enzyme-based media for: E. Coli detection. Environmental Science: Water Research and Technology, 5(12), 2260-2268.

Liu, W., & Irudayaraj, J. (2019). Understanding the dynamics and structure of epigenetic states with single-molecule fluorescence microscopy. Current Opinion in Biomedical Engineering, 12, 18-24.

Lin, Y., Yang, Z., Lake, R. J., Zheng, C., & Lu, Y. (2019). Enzyme-Mediated Endogenous and Bioorthogonal Control of a DNAzyme Fluorescent Sensor for Imaging Metal Ions in Living Cells. Angewandte Chemie - International Edition, 58(47), 17061-17067.

Xia, L., Han, M. J., Zhou, L., Huang, A., Yang, Z., Wang, T., ... Wang, J. (2019). S-Click Reaction for Isotropic Orientation of Oxidases on Electrodes to Promote Electron Transfer at Low Potentials. Angewandte Chemie - International Edition, 58(46), 16480-16484.

Hwang, K., Mou, Q., Lake, R. J., Xiong, M., Holland, B., & Lu, Y. (2019). Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors. Inorganic Chemistry, 58(20), 13696-13708.

Roberts, R. D., Lizardo, M. M., Reed, D. R., Hingorani, P., Glover, J., Allen-Rhoades, W., ... Crompton, B. D. (2019). Provocative questions in osteosarcoma basic and translational biology: A report from the Children's Oncology Group. Cancer, 125(20), 3514-3525.

Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M., & Saif, M. T. A. (2019). Neuromuscular actuation of biohybrid motile bots. Proceedings of the National Academy of Sciences of the United States of America, 116(40), 19841-19847.

Canady, T. D., Li, N., Smith, L. D., Lu, Y., Kohli, M., Smith, A. M., & Cunningham, B. T. (2019). Digital-resolution detection of microRNA with singlebase selectivity by photonic resonator absorption microscopy. Proceedings of the National Academy of Sciences of the United States of America, 116(39), 19362-19367.

Wang, W., Yu, S., Huang, S., Bi, S., Han, H., Zhang, J. R., ... Zhu, J. J. (2019). Bioapplications of DNA nanotechnology at the solid-liquid interface. Chemical Society Reviews, 48(18), 4892-4920.

Li, L., Xing, H., Zhang, J., & Lu, Y. (2019). Functional DNA Molecules Enable Selective and Stimuli-Responsive Nanoparticles for Biomedical Applications. Accounts of chemical research, 52(9), 2415-2426.

Rattan, S., Beers, H. K., Kannan, A., Ramakrishnan, A., Brehm, E., Bagchi, I. C., ... Flaws, J. A. (2019). Prenatal and ancestral exposure to di(2-ethylhexyl) phthalate alters gene expression and DNA methylation in mouse ovaries. Toxicology and Applied Pharmacology, 379, [114629].

Huang, Q., & Cunningham, B. T. (2019). Microcavity-Mediated Spectrally Tunable Amplification of Absorption in Plasmonic Nanoantennas. Nano letters, 19(8), 5297-5303.

Aguirre, M. Á., Long, K. D., & Cunningham, B. T. (2019). Spectrometric Smartphone-Based System for Ibuprofen Quantification in Commercial Dosage Tablets. Journal of Pharmaceutical Sciences, 108(8), 2593-2598.

Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., ... Zartman, J. (2019). Multi-cellular engineered living systems: Building a community around responsible research on emergence. Biofabrication, 11(4), [043001].

Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., ... Bashir, R. (2019). Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood. Analyst, 144(13), 3925-3935.

Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., ... Bashir, R. (2019). Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle. Tissue Engineering - Part A, 25(13-14), 1023-1036.

Kostochka, A. V., Liu, X., Machado, R., & Milenkovic, O. (2019). Directed Intersection Representations and the Information Content of Digraphs. In 2019 IEEE International Symposium on Information Theory, ISIT 2019 - Proceedings (pp. 1477-1481). [8849253] (IEEE International Symposium on Information Theory - Proceedings; Vol. 2019-July). Institute of Electrical and Electronics Engineers Inc..

Gabrys, R., Dau, H., Colbourn, C. J., & Milenkovic, O. (2019). Set-Codes with Small Intersections and Small Discrepancies. In 2019 IEEE International Symposium on Information Theory, ISIT 2019 - Proceedings (pp. 2359-2363). [8849651] (IEEE International Symposium on Information Theory - Proceedings; Vol. 2019-July). Institute of Electrical and Electronics Engineers Inc..

Satyavolu, N. S. R., Loh, K. Y., Tan, L. H., & Lu, Y. (2019). Discovery of and Insights into DNA “Codes” for Tunable Morphologies of Metal Nanoparticles. Small, 15(26), [1900975].

Zhao, J., Chu, H., Zhao, Y., Lu, Y., & Li, L. (2019). A NIR Light Gated DNA Nanodevice for Spatiotemporally Controlled Imaging of MicroRNA in Cells and Animals. Journal of the American Chemical Society, 141(17), 7056-7062.

Walters, K. A., Zhu, R., Welge, M., Scherler, K., Park, J. K., Rahil, Z., ... Kash, J. C. (2019). Differential effects of influenza virus NA, HA head, and HA stalk antibodies on peripheral blood leukocyte gene expression during human infection. mBio, 10(3), [e00760-19].

Lee, J. Y., Bai, Y., Chembazhi, U. V., Peng, S., Yum, K., Luu, L. M., ... Zimmerman, S. C. (2019). Intrinsically cell-penetrating multivalent and multitargeting ligands for myotonic dystrophy type 1. Proceedings of the National Academy of Sciences of the United States of America, 116(18), 8709-8714.

Satyavolu, N. S. R., Peinetti, A. S., Wang, Y., Ali, A. S., Lin, J. W., & Lu, Y. (2019). Silver-Assisted Synthesis of High-Indexed Palladium Tetrahexahedral Nanoparticles and Their Morphological Variants. Chemistry of Materials, 31(8), 2923-2929.

Mirts, E. N., Bhagi-Damodaran, A., & Lu, Y. (2019). Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors. Accounts of chemical research, 52(4), 935-944.

Xu, J., Qiao, X., Zhang, J., Cheng, N., Sheng, Q., Zheng, J., ... Lu, Y. (2019). Point-of-care monitoring of intracellular glutathione and serum triglyceride levels using a versatile personal glucose meter. Analytical Methods, 11(14), 1849-1856.

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., ... Cheng, G. J. (2019). Correction to: Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps (Advanced Materials, (2016), 28, 41, (9152-9162), 10.1002/adma.201602497). Advanced Materials, 31(14), [1900190].

Kulkoyluoglu-Cotul, E., Smith, B. P., Wrobel, K., Zhao, Y. C., Chen, K. L. A., Hieronymi, K., ... Madak-Erdogan, Z. (2019). Combined Targeting of Estrogen Receptor Alpha and XPO1 Prevent Akt Activation, Remodel Metabolic Pathways and Induce Autophagy to Overcome Tamoxifen Resistance. Cancers, 11(4), [479].

Dikanov, S. A., Berry, S. M., & Lu, Y. (2019). HYSCORE Insights into the Distribution of the Unpaired Spin Density in an Engineered Cu A Site in Azurin and Its His120Gly Variant Inorganic Chemistry, 58(7), 4437-4445.

Zhang, J. J., & Lu, Y. (2019). Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins. Clinical Chemistry, 65(4), 507-509.

Young, T. J., Cui, Y., Irudayaraj, J., & Kirchmaier, A. L. (2019). Modulation of gene silencing by Cdc7p via H4 K16 acetylation and phosphorylation of chromatin assembly factor CAF-1 in saccharomyces cerevisiae. Genetics, 211(4), 1219-1237.

Damayanti, N. P., Buno, K., Voytik Harbin, S. L., & Irudayaraj, J. M. K. (2019). Epigenetic Process Monitoring in Live Cultures with Peptide Biosensors. ACS Sensors, 4(3), 562-565.

Zhang, J. J., Lan, T., & Lu, Y. (2019). Molecular Engineering of Functional Nucleic Acid Nanomaterials toward In Vivo Applications. Advanced Healthcare Materials, 8(6), [1801158].

Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., ... Kong, H. (2019). Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction. Advanced Science, 6(6), [1801521].

Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., ... King, W. P. (2019). Monolayer MoS 2 Nanoribbon Transistors Fabricated by Scanning Probe Lithography Nano letters, 19(3), 2092-2098.

Sun, Q., Zhu, R., Wang, T., & Zeng, D. (2019). Counting process-based dimension reduction methods for censored outcomes. Biometrika, 106(1), 181-186.

Bibak, K., & Milenkovic, O. (2019). Explicit formulas for the weight enumerators of some classes of deletion correcting codes. IEEE Transactions on Communications, 67(3), 1809-1816. [8573841].

Ren, W., Mohammed, S. I., Wereley, S., & Irudayaraj, J. M. K. (2019). Magnetic Focus Lateral Flow Sensor for Detection of Cervical Cancer Biomarkers. Analytical chemistry, 91(4), 2876-2884.

Seimetz, J., Arif, W., Bangru, S., Hernaez, M., & Kalsotra, A. (2019). Cell-type specific polysome profiling from mammalian tissues. Methods, 155, 131-139.

Ren, W., Ballou, D. R., FitzGerald, R., & Irudayaraj, J. M. K. (2019). Plasmonic enhancement in lateral flow sensors for improved sensing of E. coli O157:H7. Biosensors and Bioelectronics, 126, 324-331.

Liu, W., Cui, Y., Ren, W., & Irudayaraj, J. (2019). Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer. Clinical epigenetics, 11(1), [16].

Aguirre, M. Á., Long, K. D., Canals, A., & Cunningham, B. T. (2019). Point-of-use detection of ascorbic acid using a spectrometric smartphone-based system. Food chemistry, 272, 141-147.

Woodburn, E. V., Long, K. D., & Cunningham, B. T. (2019). Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer. IEEE Sensors Journal, 19(2), 508-514. [8494768].

Kumar, P., Liu, J., Motlag, M., Tong, L., Hu, Y., Huang, X., ... Cheng, G. J. (2019). Laser Shock Tuning Dynamic Interlayer Coupling in Graphene-Boron Nitride Moiré Superlattices. Nano letters, 19(1), 283-291.

Che, C., Li, N., Long, K. D., Aguirre, M. Á., Canady, T. D., Huang, Q., ... Cunningham, B. T. (2019). Activate capture and digital counting (AC + DC) assay for protein biomarker detection integrated with a self-powered microfluidic cartridge. Lab on a chip, 19(23), 3943-3953.

Mi, X., Zou, F., & Zhu, R. (2019). Bagging and deep learning in optimal individualized treatment rules. Biometrics, 75(2), 674-684.

Cui, C., Reed, J. H., Mirts, E. N., & Lu, Y. (2019). CHAPTER 2: Design and Engineering of Heme Enzymes with O 2 -dependent Catalytic Activity. In M. Ikeda-Saito, & E. Raven (Eds.), Dioxygen-dependent Heme Enzymes (13 ed., pp. 37-62). (RSC Metallobiology; Vol. 2019-January, No. 13). Royal Society of Chemistry.

Tunc, E., Eve, A. A., & Madak-Erdogan, Z. (Accepted/In press). Coronary Microvascular Dysfunction and Estrogen Receptor Signaling. Trends in Endocrinology and Metabolism.

Liu, C., Yu, Y., Chen, D., Zhao, J., Yu, Y., Li, L., & Lu, Y. (2019). Cupredoxin engineered upconversion nanoparticles for ratiometric luminescence sensing of Cu2+. Nanoscale Advances, 1(7), 2580-2585.

Sabri, L., Huang, Q., Liu, J. N., & Cunningham, B. T. (2019). Design of anapole mode electromagnetic field enhancement structures for biosensing applications. Optics Express, 27(5), 7196-7212.

Lake, R. J., Yang, Z., Zhang, J. J., & Lu, Y. (Accepted/In press). DNAzymes as Activity-Based Sensors for Metal Ions: Recent Applications, Demonstrated Advantages, Current Challenges, and Future Directions. Accounts of chemical research.

Madak-Erdogan, Z., Band, S., Zhao, Y. C., Smith, B. P., Kulkoyluoglu-Cotul, E., Zuo, Q., ... Flaws, J. A. (2019). Free fatty acids rewire cancer metabolism in obesity-associated breast cancer via estrogen receptor and mTOR signaling. Cancer Research, 79(10), 2494-2510.

Roy, J., Dibaeinia, P., Fan, T. M., Sinha, S., & Das, A. (2019). Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells. Journal of Lipid Research, 60(2), 375-387.

Schlein, L. J., Fadl-Alla, B., Pondenis, H. C., Lezmi, S., Eberhart, C. G., LeBlanc, A. K., ... Fan, T. M. (2019). Immunohistochemical characterization of procaspase-3 overexpression as a druggable target with PAC-1, a procaspase-3 activator, in canine and human brain cancers. Frontiers in Oncology, 9(FEB), [96].

Feng, Z., Lin, L., Zhu, R., & Zhu, L. (2019). Nonparametric variable selection and its application to additive models. Annals of the Institute of Statistical Mathematics.

Dau, H., Milenkovic, O., & Puleo, G. J. (Accepted/In press). On the triangle clique cover and Kt clique cover problems. Discrete Mathematics, [111627].

Xue, C., Zhang, S., Li, C., Yu, X., Ouyang, C., Lu, Y., & Wu, Z. S. (Accepted/In press). Y-Shaped Backbone-Rigidified Triangular DNA Scaffold-Directed Stepwise Movement of a DNAzyme Walker for Sensitive MicroRNA Imaging within Living Cells. Analytical chemistry.

Kulkoyluoglu-Cotul, E., Arca, A., & Madak-Erdogan, Z. (2019). Crosstalk between Estrogen Signaling and Breast Cancer Metabolism. Trends in Endocrinology and Metabolism, 30(1), 25-38.

Watson, M. K., Mitchell, M. A., Stern, A. W., Labelle, A. L., Joslyn, S., Fan, T. M., ... Marshall, K. (2019). EVALUATING THE CLINICAL AND PHYSIOLOGICAL EFFECTS OF LONG-TERM ULTRAVIOLET B RADIATION ON RABBITS (ORYCTOLAGUS CUNICULUS). Journal of Exotic Pet Medicine, 28, 43-55.

Dowling, M., Samuelson, J., Fadl-Alla, B., Pondenis, H. C., Byrum, M., Barger, A. M., & Fan, T. M. (2019). Overexpression of prostate specific membrane antigen by canine hemangiosarcoma cells provides opportunity for the molecular detection of disease burdens within hemorrhagic body cavity effusions. PloS one, 14(1), [e0210297].

Overgaard, N. H., Fan, T. M., Schachtschneider, K. M., Principe, D. R., Schook, L. B., & Jungersen, G. (2018). Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research. ILAR Journal, 59(3), 247-262.

Sabuncu, S., Reed, J. H., Lu, Y., & Moënne-Loccoz, P. (2018). Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle. Journal of the American Chemical Society, 140(50), 17389-17393.

Yang, Z., Loh, K. Y., Chu, Y. T., Feng, R., Satyavolu, N. S. R., Xiong, M., ... Lu, Y. (2018). Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles. Journal of the American Chemical Society, 140(50), 17656-17665.

Ravanmehr, V., Puleo, G. J., Bolouki, S., & Milenkovic, O. (2018). Paired threshold graphs. Discrete Applied Mathematics, 250, 291-308.

Liu, Y., Le, P., Lim, S. J., Ma, L., Sarkar, S., Han, Z., ... Smith, A. M. (2018). Enhanced mRNA FISH with compact quantum dots. Nature communications, 9(1), [4461].

Chen, K. L. A., Liu, X., Zhao, Y. C., Hieronymi, K., Rossi, G., Auvil, L. S., ... Madak-Erdogan, Z. (2018). Long-Term Administration of Conjugated Estrogen and Bazedoxifene Decreased Murine Fecal β-Glucuronidase Activity Without Impacting Overall Microbiome Community. Scientific reports, 8(1), [8166].

Burton, J. H., Mazcko, C., LeBlanc, A., Covey, J. M., Ji, J., Kinders, R. J., ... Pommier, Y. (2018). NCI comparative oncology program testing of non-camptothecin indenoisoquinoline topoisomerase I inhibitors in naturally occurring canine lymphoma. Clinical Cancer Research, 24(23), 5830-5840.

Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., ... Bashir, R. (2018). Pixelated spatial gene expression analysis from tissue. Nature communications, 9(1), [202].

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A., & Cunningham, B. T. (2018). Quantitative analysis of focal adhesion dynamics using photonic resonator outcoupler microscopy (PROM). Light: Science and Applications, 7(1), [7538].

Zahid, M. U., Ma, L., Lim, S. J., & Smith, A. M. (2018). Single quantum dot tracking reveals the impact of nanoparticle surface on intracellular state. Nature communications, 9(1), [1830].

Bhandari, P., Novikova, G., Goergen, C. J., & Irudayaraj, J. (2018). Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy. Scientific reports, 8(1), [3112].

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., ... Adams, M. WW. (2018). A new era for electron bifurcation. Current Opinion in Chemical Biology, 47, 32-38.

Yi, M., Zhu, R., & Stephens, R. M. (2018). GradientScanSurv—An exhaustive association test method for gene expression data with censored survival outcome. PloS one, 13(12), [e0207590].

Svec, R. L., Furiassi, L., Skibinski, C. G., Fan, T. M., Riggins, G. J., & Hergenrother, P. J. (2018). Tunable Stability of Imidazotetrazines Leads to a Potent Compound for Glioblastoma. ACS chemical biology, 13(11), 3206-3216.

Wang, Y., Reddy Satyavolu, N. S., & Lu, Y. (2018). Sequence-specific control of inorganic nanomaterials morphologies by biomolecules. Current Opinion in Colloid and Interface Science, 38, 158-169.

Smith, L., Kohli, M., & Smith, A. M. (2018). Expanding the Dynamic Range of Fluorescence Assays through Single-Molecule Counting and Intensity Calibration. Journal of the American Chemical Society, 140(42), 13904-13912.

Yu, Z., Zhou, W., Ma, G., Li, Y., Fan, L., Li, X., & Lu, Y. (2018). Insights into the Competition between K+ and Pb2+ Binding to a G-Quadruplex and Discovery of a Novel K+-Pb2+-Quadruplex Intermediate. Journal of Physical Chemistry B, 122(40), 9382-9388.

Bangru, S., Arif, W., Seimetz, J., Bhate, A., Chen, J., Rashan, E. H., ... Kalsotra, A. (2018). Alternative splicing rewires Hippo signaling pathway in hepatocytes to promote liver regeneration. Nature Structural and Molecular Biology, 25(10), 928-939.

Dau, H., Duursma, I. M., Kiah, H. M., & Milenkovic, O. (2018). Repairing Reed-Solomon Codes With Multiple Erasures. IEEE Transactions on Information Theory, 64(10), 6567-6582. [8340062].

Mirts, E. N., Petrik, I. D., Hosseinzadeh, P., Nilges, M. J., & Lu, Y. (2018). A designed heme-[4Fe-4S] metalloenzyme catalyzes sulfite reduction like the native enzyme. Science, 361(6407), 1098-1101.

Mukherjee, S., Mukherjee, M., Mukherjee, A., Bhagi-Damodaran, A., Lu, Y., & Dey, A. (2018). O 2 Reduction by Biosynthetic Models of Cytochrome c Oxidase: Insights into Role of Proton Transfer Residues from Perturbed Active Sites Models of CcO. ACS Catalysis, 8(9), 8915-8924.

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J. A., ... Bashir, R. (2018). 3D printing for preoperative planning and surgical training: a review. Biomedical microdevices, 20(3), [65].

Satyavolu, N. S. R., Pishevaresfahani, N., Tan, L. H., & Lu, Y. (2018). DNA-encoded morphological evolution of bimetallic Pd@Au core-shell nanoparticles from a high-indexed core. Nano Research, 11(9), 4549-4561.

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., ... Bashir, R. (2018). Point-of-care sensors for the management of sepsis. Nature biomedical engineering, 2(9), 640-648.

Tabatabaei Yazdi, S. M. H., Kiah, H. M., Gabrys, R., & Milenkovic, O. (2018). Mutually uncorrelated primers for DNA-based data storage. IEEE Transactions on Information Theory, 64(9), 6283-6296. [8255669].

Anorma, C., Hedhli, J., Bearrood, T. E., Pino, N. W., Gardner, S. H., Inaba, H., ... Chan, J. K. F. (2018). Surveillance of Cancer Stem Cell Plasticity Using an Isoform-Selective Fluorescent Probe for Aldehyde Dehydrogenase 1A1. ACS Central Science, 4(8), 1045-1055.

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