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Computing Genomes for Reproductive Health: Publications

Racioppi, L., Nelson, E., Huang, W., Mukherjee, D., Lawrence, S. A., Lento, W., ... McDonnell, D. P. (2019). CaMKK2 in myeloid cells is a key regulator of the immune-suppressive microenvironment in breast cancer. Nature communications, 10(1), [2450]. https://doi.org/10.1038/s41467-019-10424-5

Salem, W., Li, K., Krapp, C., Ingles, S. A., Bartolomei, M. S., Chung, K., ... McGinnis, L. K. (2019). Imatinib treatments have long-term impact on placentation and embryo survival. Scientific Reports, 9(1), [2535]. https://doi.org/10.1038/s41598-019-39134-0

For the Alzheimer’s Disease Neuroimaging Initiative, & Iyer, R. K. (2019). Predicting Short-term MCI-to-AD Progression Using Imaging, CSF, Genetic Factors, Cognitive Resilience, and Demographics. Scientific Reports, 9(1), [2235]. https://doi.org/10.1038/s41598-019-38793-3

Kern, S., & Laurent, H. K. (2019). Childhood abuse predicts affective symptoms via HPA reactivity during mother-infant stress. Psychoneuroendocrinology, 107, 19-25. https://doi.org/10.1016/j.psyneuen.2019.04.023

Pafčo, B., Sharma, A. K., Petrželková, K. J., Vlčková, K., Todd, A., Yeoman, C. J., ... Gomez, A. (2019). Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors. American journal of physical anthropology, 169(3), 575-585. https://doi.org/10.1002/ajpa.23842

Shahoei, S. H., & Nelson, E. (2019). Nuclear receptors, cholesterol homeostasis and the immune system. Journal of Steroid Biochemistry and Molecular Biology, 191, [105364]. https://doi.org/10.1016/j.jsbmb.2019.04.013

Saboo, K. V., Varatharajah, Y., Berry, B. M., Sperling, M. R., Gorniak, R., Davis, K. A., ... Iyer, R. K. (2019). A Computationally Efficient Model for Predicting Successful Memory Encoding Using Machine-Learning-based EEG Channel Selection. In 9th International IEEE EMBS Conference on Neural Engineering, NER 2019 (pp. 323-327). [8717057] (International IEEE/EMBS Conference on Neural Engineering, NER; Vol. 2019-March). IEEE Computer Society. https://doi.org/10.1109/NER.2019.8717057

Ochoa-Alvarez, I., Li, H., Baumgarte, F., Hergenrother, C., Voges, J., & Hernaez, M. (2019). AliCo: A New Efficient Representation for SAM Files. In A. Bilgin, J. A. Storer, J. Serra-Sagrista, & M. W. Marcellin (Eds.), Proceedings - DCC 2019: 2019 Data Compression Conference (pp. 93-102). [8712770] (Data Compression Conference Proceedings; Vol. 2019-March). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DCC.2019.00017

Goyal, M., Tatwawadi, K., Chandak, S., & Ochoa-Alvarez, I. (2019). DeepZip: Lossless Data Compression Using Recurrent Neural Networks. In A. Bilgin, J. A. Storer, J. Serra-Sagrista, & M. W. Marcellin (Eds.), Proceedings - DCC 2019: 2019 Data Compression Conference [8712659] (Data Compression Conference Proceedings; Vol. 2019-March). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DCC.2019.00087

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2019). Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter. Journal of Archaeological Science, 105, 11-18. https://doi.org/10.1016/j.jas.2019.02.006

Nute, M., Saleh, E., & Warnow, T. (2019). Evaluating statistical multiple sequence alignment in comparison to other alignment methods on protein data sets. Systematic biology, 68(3), 396-411. https://doi.org/10.1093/sysbio/syy068

Bader, A. C., & Malhi, R. S. (2019). How Subjectivity Strengthens Research: Developing an Integrative Approach to Investigating Human Diet in the Pacific Northwest Coast. American Anthropologist, 121(2), 476-478. https://doi.org/10.1111/aman.13218

Malhi, R. S., Antón, S. C., & Fuentes, A. (2019). Increasing Diversity in Evolutionary Anthropological Sciences—the IDEAS Program. American Anthropologist, 121(2), 478-479. https://doi.org/10.1111/aman.13226

Shah, N., Nute, M. G., Warnow, T., & Pop, M. (2019). Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinformatics (Oxford, England), 35(9), 1613-1614. https://doi.org/10.1093/bioinformatics/bty833

Barakat, R., Seymore, T., Lin, P. C. P., Park, C. J., & Ko, C. (2019). Prenatal exposure to an environmentally relevant phthalate mixture disrupts testicular steroidogenesis in adult male mice. Environmental Research, 194-201. https://doi.org/10.1016/j.envres.2019.02.017

Chung, K., Kalbarczyk, Z. T., & Iyer, R. K. (2019). Availability attacks on computing systems through alteration of environmental control: Smart malware approach. In G. S. Ramachandran, & J. Ortiz (Eds.), ICCPS 2019 - Proceedings of the 2019 ACM/IEEE International Conference on Cyber-Physical Systems (pp. 1-12). (ICCPS 2019 - Proceedings of the 2019 ACM/IEEE International Conference on Cyber-Physical Systems). Association for Computing Machinery, Inc. https://doi.org/10.1145/3302509.3311041

Parker, A. T., Gardner, A. M., Perez, M., Allan, B. F., & Muturi, E. J. (2019). Container Size Alters the Outcome of Interspecific Competition Between Aedes aegypti (Diptera: Culicidae) and Aedes albopictus. Journal of medical entomology, 56(3), 708-715. https://doi.org/10.1093/jme/tjy215

Banerjee, S. S., Kalbarczyk, Z. T., & Iyer, R. K. (2019). AcMC 2: Accelerated Markov Chain Monte Carlo for Probabilistic Models. In ASPLOS 2019 - 24th International Conference on Architectural Support for Programming Languages and Operating Systems (pp. 515-528). (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS). Association for Computing Machinery. https://doi.org/10.1145/3297858.3304019

Laurent, H. K. (2019). Challenges in Characterizing the “Mommy Brain”. Parenting, 19(1-2), 94-96. https://doi.org/10.1080/15295192.2019.1556007

Devendran, S., Shrestha, R., Alves, J. M. P., Wolf, P. G., Ly, L., Hernandez, A. G., ... Ridlon, J. M. (2019). Clostridium scindens ATCC 35704: Integration of nutritional requirements, the complete genome sequence, and global transcriptional responses to bile acids. Applied and environmental microbiology, 85(7), [e00052-19]. https://doi.org/10.1128/AEM.00052-19

Najafi, A., Daghigh Kia, H., Mehdipour, M., Shamsollahi, M., & Miller, D. J. (2019). Does fennel extract ameliorate oxidative stress frozen-thawed ram sperm? Cryobiology, 87, 47-51. https://doi.org/10.1016/j.cryobiol.2019.02.006

Kim, D. H., Park, H. J., Park, H. S., Lee, J. U., Ko, C., Gye, M. C., & Choi, J. M. (2019). Estrogen receptor α in T cells suppresses follicular helper T cell responses and prevents autoimmunity. Experimental and Molecular Medicine, 51(4), [41]. https://doi.org/10.1038/s12276-019-0237-z

Landesman, W. J., Mulder, K., Allan, B. F., Bashor, L. A., Keesing, F., LoGiudice, K., & Ostfeld, R. S. (2019). Potential effects of blood meal host on bacterial community composition in Ixodes scapularis nymphs. Ticks and Tick-borne Diseases, 10(3), 523-527. https://doi.org/10.1016/j.ttbdis.2019.01.002

Ma, L., & Nelson, E. (2019). Oxysterols and nuclear receptors. Molecular and Cellular Endocrinology, 484, 42-51. https://doi.org/10.1016/j.mce.2019.01.016

Kim, B. M., Amores, A., Kang, S., Ahn, D. H., Kim, J. H., Kim, I. C., ... Park, H. (2019). Antarctic blackfin icefish genome reveals adaptations to extreme environments. Nature Ecology and Evolution, 3(3), 469-478. https://doi.org/10.1038/s41559-019-0812-7

Sun, Q., Zhu, R., Wang, T., & Zeng, D. (2019). Counting process-based dimension reduction methods for censored outcomes. Biometrika, 106(1), 181-186. https://doi.org/10.1093/biomet/asy064

Parker, A. T., & Allan, B. F. (2019). Do gutter guards affect mosquito production in roof gutter habitats? Journal of the American Mosquito Control Association, 35(1), 67-70. https://doi.org/10.2987/18-6782.1

Amato, K. R., G. Sanders, J., Song, S. J., Nute, M., Metcalf, J. L., Thompson, L. R., ... R. Leigh, S. (2019). Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes. ISME Journal, 13(3), 576-587. https://doi.org/10.1038/s41396-018-0175-0

Roch, S., Nute, M., & Warnow, T. (2019). Long-Branch Attraction in Species Tree Estimation: Inconsistency of Partitioned Likelihood and Topology-Based Summary Methods. Systematic biology, 68(2), 281-297. https://doi.org/10.1093/sysbio/syy061

Welsh, E. C., Keesing, F., & Allan, B. F. (2019). Oxpecker (Buphagus erythrorhynchus, Buphagus africanus) and tick abundances in acaricide-treated livestock areas. African Journal of Ecology, 57(1), 155-159. https://doi.org/10.1111/aje.12560

Park, C. J., Barakat, R., Ulanov, A., Li, Z. L., Lin, P. C., Chiu, K., ... Ko, C. (2019). Sanitary pads and diapers contain higher phthalate contents than those in common commercial plastic products. Reproductive Toxicology, 84, 114-121. https://doi.org/10.1016/j.reprotox.2019.01.005

Masonbrink, R., Maier, T. R., Muppirala, U., Seetharam, A. S., Lord, E., Juvale, P. S., ... Baum, T. J. (2019). The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. BMC genomics, 20(1), [119]. https://doi.org/10.1186/s12864-019-5485-8

Zhang, Q., Rao, S., & Warnow, T. (2019). Constrained incremental tree building: New absolute fast converging phylogeny estimation methods with improved scalability and accuracy. Algorithms for Molecular Biology, 14(1), [2]. https://doi.org/10.1186/s13015-019-0136-9

Nowak, R. A. (2019). An interview with Professor Virendra B. Mahesh. Biology of reproduction, 100(2), 301-304. https://doi.org/10.1093/biolre/ioy239

Yu, L., Wang, L., Mao, C., Duraki, D., Kim, J. E., Huang, R., ... Shapiro, D. J. (2019). Estrogen-independent Myc overexpression confers endocrine therapy resistance on breast cancer cells expressing ERαY537S and ERαD538G mutations. Cancer Letters, 442, 373-382. https://doi.org/10.1016/j.canlet.2018.10.041

Tisha, A. L., Armstrong, A. A., Wagoner Johnson, A. J., & Lopez-Ortiz, C. (2019). Skeletal Muscle Adaptations and Passive Muscle Stiffness in Cerebral Palsy: A Literature Review and Conceptual Model. Journal of Applied Biomechanics, 35(1), 68-79. https://doi.org/10.1123/jab.2018-0049

Khan, F., & Laurent, H. K. (2019). Assessing the Impact of Mindfulness and Life Stress on Maternal Well-Being. Mindfulness, 10(1), 26-35. https://doi.org/10.1007/s12671-018-0943-y

Mi, X., Zou, F., & Zhu, R. (2019). Bagging and deep learning in optimal individualized treatment rules. Biometrics. https://doi.org/10.1111/biom.12990

Dufort y Álvarez, G., Seroussi, G., Smircich, P., Sotelo, J., Ochoa-Alvarez, I., & Martín, Á. (2019). Compression of Nanopore FASTQ Files. In F. Ortuño, O. Valenzuela, I. Rojas, F. Rojas, & F. Ortuño (Eds.), Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Proceedings (pp. 36-47). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11465 LNBI). Springer-Verlag. https://doi.org/10.1007/978-3-030-17938-0_4

Josek, T., Gardner, A. M., Hedlund, T. J., Parker, A. T., Allmann Updyke, E., & Allan, B. F. (2019). Fatal attraction: lone star ticks (Amblyomma americanum) exhibit preference for human female breath over male breath. Experimental and Applied Acarology, 77(1), 59-64. https://doi.org/10.1007/s10493-018-00338-0

Kucewicz, M. T., Saboo, K., Berry, B. M., Kremen, V., Miller, L. R., Khadjevand, F., ... Worrell, G. A. (2019). Human verbal memory encoding is hierarchically distributed in a continuous processing stream. eNeuro, 6(1), [e0214-18.2018]. https://doi.org/10.1523/ENEURO.0214-18.2018

Tang, X., Bi, X., & Qu, P. (2019). Individualized Multilayer Tensor Learning With an Application in Imaging Analysis. Journal of the American Statistical Association. https://doi.org/10.1080/01621459.2019.1585254

Wang, Y., Araud, E., Shisler, J. L., Nguyen, T. H., & Yuan, B. (2019). Influence of algal organic matter on MS2 bacteriophage inactivation by ultraviolet irradiation at 220 nm and 254 nm. Chemosphere, 214, 195-202. https://doi.org/10.1016/j.chemosphere.2018.09.065

Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Ganai, S., Delfino, K. R., & Jenkins, W. D. (Accepted/In press). Knowledge, attitudes, and perceived barriers towards genetic testing across three rural Illinois communities. Journal of Community Genetics. https://doi.org/10.1007/s12687-019-00407-w

Nelson, B. W., Wright, D. B., Allen, N. B., & Laurent, H. K. (2019). Maternal stress and social support prospectively predict infant inflammation. Brain, Behavior, and Immunity. https://doi.org/10.1016/j.bbi.2019.05.010

Rustom, L. E., Poellmann, M. J., & Wagoner Johnson, A. J. (2019). Mineralization in micropores of calcium phosphate scaffolds. Acta Biomaterialia, 83, 435-455. https://doi.org/10.1016/j.actbio.2018.11.003

Warnow, T. (2019). New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation. In M. A. Vega-Rodríguez, I. Holmes, & C. Martín-Vide (Eds.), Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings (pp. 3-21). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11488 LNBI). Springer-Verlag. https://doi.org/10.1007/978-3-030-18174-1_1

Feng, Z., Lin, L., Zhu, R., & Zhu, L. (2019). Nonparametric variable selection and its application to additive models. Annals of the Institute of Statistical Mathematics. https://doi.org/10.1007/s10463-019-00711-9

Duffy, D. M., Ko, C., Jo, M., Brannstrom, M., & Curry, T. E. (2019). Ovulation: Parallels with inflammatory processes. Endocrine reviews, 40(2), 369-416. https://doi.org/10.1210/er.2018-00075

Kramer, K., Andrade, F. C. D., Greenlee, A. J., Mendenhall, R., Bellisle, D., & Lemons Blanks, R. (2019). Periodic Earned Income Tax Credit (EITC) Payment, Financial Stress and Wellbeing: A Longitudinal Study. Journal of Family and Economic Issues. https://doi.org/10.1007/s10834-019-09618-2

Xiang, D., Zhao, S. D., & Tony Cai, T. (2019). Signal classification for the integrative analysis of multiple sequences of large-scale multiple tests. Journal of the Royal Statistical Society. Series B: Statistical Methodology. https://doi.org/10.1111/rssb.12323

Dawson, D. N., Volpe, V. V., & Laurent, H. K. (2019). Synergistic Effects of Psychological Intimate Partner Violence Exposure and Gender Discrimination on Postnatal Mental Health Trajectories. Journal of Interpersonal Violence. https://doi.org/10.1177/0886260519844274

Le, T., Sy, A., Molloy, E. K., Zhang, Q. R., Rao, S., & Warnow, T. (2019). Using INC Within Divide-and-Conquer Phylogeny Estimation. In M. A. Vega-Rodríguez, I. Holmes, & C. Martín-Vide (Eds.), Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings (pp. 167-178). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11488 LNBI). Springer-Verlag. https://doi.org/10.1007/978-3-030-18174-1_12

Lin, H., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Impact of Malicious SCADA Commands on Power Grids' Dynamic Responses. In 2018 IEEE International Conference on Communications, Control, and Computing Technologies for Smart Grids, SmartGridComm 2018 [8587462] (2018 IEEE International Conference on Communications, Control, and Computing Technologies for Smart Grids, SmartGridComm 2018). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SmartGridComm.2018.8587462

Stephens, Z., Wang, C., Iyer, R. K., & Kocher, J. P. (2018). Detection and visualization of complex structural variants from long reads. BMC bioinformatics, 19, [508]. https://doi.org/10.1186/s12859-018-2539-x

Moreno-Mayar, J. V., Vinner, L., de Barros Damgaard, P., de la Fuente, C., Chan, J., Spence, J. P., ... Willerslev, E. (2018). Early human dispersals within the Americas. Science (New York, N.Y.), 362(6419). https://doi.org/10.1126/science.aav2621

Pei, Y., Shahoei, S. H., Li, Y., Reece, P. J., Nelson, E., Gooding, J. J., & Kilian, K. A. (2018). Vertical Integration of Cell-Laden Hydrogels with Bioinspired Photonic Crystal Membranes. Advanced Materials Interfaces, 5(23), [1801233]. https://doi.org/10.1002/admi.201801233

Lee, G., Sherer, N. A., Kim, N. H., Rajic, E., Kaur, D., Urriola, N., ... Kuhlman, T. E. (2018). Testing the retroelement invasion hypothesis for the emergence of the ancestral eukaryotic cell. Proceedings of the National Academy of Sciences of the United States of America, 115(49), 12465-12470. https://doi.org/10.1073/pnas.1807709115

Winters, R. A., Hamilton, D. N., Bhatnagar, A. S., Fitzgerald, R., Bovin, N., & Miller, D. J. (2018). Porcine sperm binding to oviduct cells and glycans as supplements to traditional laboratory semen analysis. Journal of animal science, 96(12), 5265-5275. https://doi.org/10.1093/jas/sky372

Tabe-Bordbar, S., Emad, A., Zhao, S. D., & Sinha, S. (2018). A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models. Scientific Reports, 8(1), [6620]. https://doi.org/10.1038/s41598-018-24937-4

Summer internship for INdigenous peoples in Genomics (SING) Consortium (2018). A framework for enhancing ethical genomic research with Indigenous communities. Nature communications, 9(1), [2957]. https://doi.org/10.1038/s41467-018-05188-3

Liu, D., Ray, B., Neavin, D. R., Zhang, J., Athreya, A. P., Biernacka, J. M., ... Weinshilboum, R. M. (2018). Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: Metabolomics-informed genomics. Translational psychiatry, 8(1), [56]. https://doi.org/10.1038/s41398-017-0056-8

Sun, P. P., Araud, E. M., Huang, C., Shen, Y., Monroy, G. L., Zhong, S., ... Nguyen, T. H. (2018). Disintegration of simulated drinking water biofilms with arrays of microchannel plasma jets. npj Biofilms and Microbiomes, 4(1), [24]. https://doi.org/10.1038/s41522-018-0063-4

Shen, Y., Huang, P. C., Huang, C., Sun, P., Monroy, G. L., Wu, W., ... Nguyen, T. H. (2018). Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms. npj Biofilms and Microbiomes, 4(1), [15]. https://doi.org/10.1038/s41522-018-0058-1

Hernandez, J., Volland, A., Leyshon, B. J., Juda, M., Ridlon, J. M., Johnson, R. W., & Steelman, A. J. (2018). Effect of imidacloprid ingestion on immune responses to porcine reproductive and respiratory syndrome virus. Scientific Reports, 8(1), [11615]. https://doi.org/10.1038/s41598-018-30093-6

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., ... Ming, R. R. (2018). Erratum to: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. (Nature Genetics, (2018), 50, 11, (1565-1573), 10.1038/s41588-018-0237-2). Nature Genetics, 50(12). https://doi.org/10.1038/s41588-018-0293-7

Yi, M., Zhu, R., & Stephens, R. M. (2018). GradientScanSurv—An exhaustive association test method for gene expression data with censored survival outcome. PloS one, 13(12), [e0207590]. https://doi.org/10.1371/journal.pone.0207590

Gardner, A. M., Muturi, E. J., & Allan, B. F. (2018). Discovery and exploitation of a natural ecological trap for a mosquito disease vector. Proceedings of the Royal Society B: Biological Sciences, 285(1891), [20181962]. https://doi.org/10.1098/rspb.2018.1962

Collins, K., & Warnow, T. (2018). PASTA for proteins. Bioinformatics, 34(22), 3939-3941. https://doi.org/10.1093/bioinformatics/bty495

Xu, J., Huang, C., Shi, X., Dong, S., Yuan, B., & Nguyen, T. H. (2018). Role of drinking water biofilms on residual chlorine decay and trihalomethane formation: An experimental and modeling study. Science of the Total Environment, 642, 516-525. https://doi.org/10.1016/j.scitotenv.2018.05.363

Molloy, E. K., & Warnow, T. (2018). Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge. https://doi.org/10.1101/469130

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., ... Ming, R. R. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565-1573. https://doi.org/10.1038/s41588-018-0237-2

Nowak, R. A. (2018). An interview with Dr Patricia A. Martin-DeLeon. Biology of reproduction, 99(5), 899-902. https://doi.org/10.1093/biolre/ioy103

Dong, S., Massalha, N., Plewa, M. J., & Nguyen, T. H. (2018). The impact of disinfection Ct values on cytotoxicity of agricultural wastewaters: Ozonation vs. chlorination. Water Research, 144, 482-490. https://doi.org/10.1016/j.watres.2018.07.065

Zheng, X., Xue, L., & Qu, P. (2018). Time-varying correlation structure estimation and local-feature detection for spatio-temporal data. Journal of Multivariate Analysis, 168, 221-239. https://doi.org/10.1016/j.jmva.2018.07.012

Hale, V. L., Jeraldo, P., Chen, J., Mundy, M., Yao, J., Priya, S., ... Chia, N. (2018). Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome medicine, 10(1). https://doi.org/10.1186/s13073-018-0586-6

Jha, S., Brandt, J., Gentile, A., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Characterizing Supercomputer Traffic Networks Through Link-Level Analysis. In Proceedings - 2018 IEEE International Conference on Cluster Computing, CLUSTER 2018 (pp. 562-570). [8514916] (Proceedings - IEEE International Conference on Cluster Computing, ICCC; Vol. 2018-September). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CLUSTER.2018.00072

Banerjee, S. S., Athreya, A. P., Kalbarczyk, Z. T., Lumetta, S. S., & Iyer, R. K. (2018). A ML-based runtime system for executing dataflow graphs on heterogeneous processors. In SoCC 2018 - Proceedings of the 2018 ACM Symposium on Cloud Computing (SoCC 2018 - Proceedings of the 2018 ACM Symposium on Cloud Computing). Association for Computing Machinery, Inc. https://doi.org/10.1145/3267809.3275474

Yuan, J., Hu, Z., Mahal, B. A., Zhao, S. D., Kensler, K. H., Pi, J., ... Zhang, L. (2018). Integrated Analysis of Genetic Ancestry and Genomic Alterations across Cancers. Cancer Cell, 34(4), 549-560.e9. https://doi.org/10.1016/j.ccell.2018.08.019

Bi, X., & Qu, P. (2018). A mixed-effects estimating equation approach to nonignorable missing longitudinal data with Refreshment samples. Statistica Sinica, 28(4), 1653-1675. https://doi.org/10.5705/ss.202015.0317

Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Wagoner Johnson, A. J., Luyten, F. P., & Picart, C. (2018). Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives. Biomaterials, 180, 143-162. https://doi.org/10.1016/j.biomaterials.2018.07.017

Keesing, F., Ostfeld, R. S., Okanga, S., Huckett, S., Bayles, B. R., Chaplin-Kramer, R., ... Allan, B. F. (2018). Consequences of integrating livestock and wildlife in an African savanna. Nature Sustainability, 1(10), 566-573. https://doi.org/10.1038/s41893-018-0149-2

Lin, H., Kalbarczyk, Z. T., & Iyer, R. K. (Accepted/In press). RAINCOAT: RAndomization of Network Communication in Power Grid Cyber INfrastructure to Mislead Attackers. IEEE Transactions on Smart Grid. https://doi.org/10.1109/TSG.2018.2870362

Harwood, S. A., Mendenhall, R., Lee, S. S., Riopelle, C., & Huntt, M. B. (2018). Everyday Racism in Integrated Spaces: Mapping the Experiences of Students of Color at a Diversifying Predominantly White Institution. Annals of the American Association of Geographers, 108(5), 1245-1259. https://doi.org/10.1080/24694452.2017.1419122

Gassen, J., Prokosch, M. L., Makhanova, A., Eimerbrink, M. J., White, J. D., Proffitt Leyva, R. P., ... Hill, S. E. (2018). Behavioral immune system activity predicts downregulation of chronic basal inflammation. PloS one, 13(9), [e0203961]. https://doi.org/10.1371/journal.pone.0203961

Alexander, C., Cross, T. W. L., Devendran, S., Neumer, F., Theis, S., Ridlon, J. M., ... Swanson, K. S. (2018). Effects of prebiotic inulin-Type fructans on blood metabolite and hormone concentrations and faecal microbiota and metabolites in overweight dogs. Clay Minerals, 120(6), 711-720. https://doi.org/10.1017/S0007114518001952

Moran, R. L., Zhou, M., Catchen, J. M., & Fuller, B. C. (2018). Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles. Ecology and Evolution, 8(18), 9282-9294. https://doi.org/10.1002/ece3.4434

Löber, U., Hobbs, M., Dayaram, A., Tsangaras, K., Jones, K., Alquezar-Planas, D. E., ... Greenwood, A. D. (2018). Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion. Proceedings of the National Academy of Sciences of the United States of America, 115(34), 8609-8614. https://doi.org/10.1073/pnas.1807598115

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Potter, B. A., Baichtal, J. F., Beaudoin, A. B., Fehren-Schmitz, L., Haynes, C. V., Holliday, V. T., ... Surovell, T. A. (2018). Current evidence allows multiple models for the peopling of the Americas. Science Advances, 4(8), [eaat5473]. https://doi.org/10.1126/sciadv.aat5473

Athreya, A., Iyer, R. K., Neavin, D., Wang, L., Weinshilboum, R., Kaddurah-Daouk, R., ... Bobo, W. (2018). Augmentation of physician assessments with multi-omics enhances predictability of drug response: A case study of major depressive disorder. IEEE Computational Intelligence Magazine, 13(3), 20-31. [8416980]. https://doi.org/10.1109/MCI.2018.2840660

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Khan, R., Nguyen, T. H., Shisler, J. L., Lin, L. S., Jutla, A., & Colwell, R. (2018). Evaluation of risk of cholera after a natural disaster: Lessons learned from the 2015 Nepal earthquake. Journal of Water Resources Planning and Management, 144(8), [04018044]. https://doi.org/10.1061/(ASCE)WR.1943-5452.0000929

Zhang, Q., Rao, S., & Warnow, T. (2018). New absolute fast converging phylogeny estimation methods with improved scalability and accuracy. In L. Parida, & E. Ukkonen (Eds.), 18th International Workshop on Algorithms in Bioinformatics, WABI 2018 [8] (Leibniz International Proceedings in Informatics, LIPIcs; Vol. 113). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. https://doi.org/10.4230/LIPIcs.WABI.2018.8

Nelson, K. L., Boehm, A. B., Davies-Colley, R. J., Dodd, M. C., Kohn, T., Linden, K. G., ... Zepp, R. G. (2018). Sunlight-mediated inactivation of health-relevant microorganisms in water: a review of mechanisms and modeling approaches. Environmental Science: Processes and Impacts, 20(8), 1089-1122. https://doi.org/10.1039/c8em00047f

Jha, S., Banerjee, S. S., Cyriac, J., Kalbarczyk, Z. T., & Iyer, R. K. (2018). AVFI: Fault Injection for Autonomous Vehicles. In Proceedings - 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks Workshops, DSN-W 2018 (pp. 55-56). [8416212] (Proceedings - 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks Workshops, DSN-W 2018). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DSN-W.2018.00027

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Shih, H. Y., Mickalide, H., Fraebel, D. T., Goldenfeld, N. D., & Kuehn, S. (2018). Biophysical constraints determine the selection of phenotypic fluctuations during directed evolution. Physical Biology, 15(6), [065003]. https://doi.org/10.1088/1478-3975/aac4e6

Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., ... Frantz, L. A. F. (2018). The evolutionary history of dogs in the Americas. Science, 361(6397), 81-85. https://doi.org/10.1126/science.aao4776

Brandt, A. L., Green, M. L., Ishida, Y., Roca, A. L., Novakofski, J. E., & Mateus-Pinilla, N. E. (2018). Influence of the geographic distribution of prion protein gene sequence variation on patterns of chronic wasting disease spread in white-tailed deer (Odocoileus virginianus). Prion, 12(3-4), 204-215. https://doi.org/10.1080/19336896.2018.1474671

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., ... Sinha, S. (2018). Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. Genes, Brain and Behavior, e12502. https://doi.org/10.1111/gbb.12502

Josek, T., Walden, K. K. O., Allan, B. F., Alleyne, M., & Robertson, H. M. (2018). A foreleg transcriptome for Ixodes scapularis ticks: Candidates for chemoreceptors and binding proteins that might be expressed in the sensory Haller's organ. Ticks and Tick-borne Diseases, 9(5), 1317-1327. https://doi.org/10.1016/j.ttbdis.2018.05.013

Lipscomb, S. T., Becker, D. R., Laurent, H. K., Neiderhiser, J. M., Shaw, D. S., Natsuaki, M. N., ... Leve, L. D. (2018). Examining morning HPA axis activity as a moderator of hostile, over-reactive parenting on children's skills for success in school. Infant and Child Development, 27(4), [e2083]. https://doi.org/10.1002/icd.2083

Athreya, A. P., Gaglio, A. J., Cairns, J., Kalari, K. R., Weinshilboum, R. M., Wang, L., ... Iyer, R. K. (2018). Machine learning helps identify new drug mechanisms in triple-negative breast cancer. IEEE Transactions on Nanobioscience, 17(3), 251-259. [8401331]. https://doi.org/10.1109/TNB.2018.2851997

Bassham, S., Catchen, J. M., Lescak, E., von Hippel, F. A., & Cresko, W. A. (2018). Repeated selection of alternatively adapted haplotypes creates sweeping genomic remodeling in stickleback. Genetics, 209(3), 921-939. https://doi.org/10.1534/genetics.117.300610

Zhou, W., Davis, E. A., Li, K., Nowak, R. A., & Dailey, M. J. (2018). Sex differences influence intestinal epithelial stem cell proliferation independent of obesity. Physiological Reports, 6(13), [e13746]. https://doi.org/10.14814/phy2.13746

Vachaspati, P., & Warnow, T. (2018). SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space. Molecular Phylogenetics and Evolution, 124, 122-136. https://doi.org/10.1016/j.ympev.2018.03.006

Halsey, S. J., Allan, B. F., & Miller, J. R. (2018). The role of Ixodes scapularis, Borrelia burgdorferi and wildlife hosts in Lyme disease prevalence: A quantitative review. Ticks and Tick-borne Diseases, 9(5), 1103-1114. https://doi.org/10.1016/j.ttbdis.2018.04.006

Brandt, J. R., De Groot, P. J. V. C., Witt, K. E., Engelbrektsson, P. K., Helgen, K. M., Malhi, R. S., ... Roca, A. L. (2018). Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis). Journal of Heredity, 109(5), 553-565. https://doi.org/10.1093/jhered/esy019

Varatharajah, Y., Berry, B., Cimbalnik, J., Kremen, V., Van Gompel, J., Stead, M., ... Worrell, G. (2018). Integrating artificial intelligence with real-time intracranial EEG monitoring to automate interictal identification of seizure onset zones in focal epilepsy. Journal of Neural Engineering, 15(4), [046035]. https://doi.org/10.1088/1741-2552/aac960

Karig, D., Michael Martini, K., Lu, T., DeLateur, N. A., Goldenfeld, N. D., & Weiss, R. (2018). Stochastic Turing patterns in a synthetic bacterial population. Proceedings of the National Academy of Sciences of the United States of America, 115(26), 6572-6577. https://doi.org/10.1073/pnas.1720770115

Mendenhall, R., Cross, K. J., Amos, J. R., Clancy, K. B. H., Imoukhuede, P., & Cromley, J. G. (2018). Intersecting identities of women in engineering. ASEE Annual Conference and Exposition, Conference Proceedings, 2018-June.

Vlčková, K., Pafčo, B., Petrželková, K. J., Modrý, D., Todd, A., Yeoman, C. J., ... Gomez, A. (2018). Relationships between gastrointestinal parasite infections and the fecal microbiome in free-ranging western lowland gorillas. Frontiers in Microbiology, 9(JUN), [1202]. https://doi.org/10.3389/fmicb.2018.01202

Scheib, C. L., Li, H., Desai, T., Link, V., Kendall, C., Dewar, G., ... Kivisild, T. (2018). Ancient human parallel lineages within North America contributed to a coastal expansion. Science, 360(6392), 1024-1027. https://doi.org/10.1126/science.aar6851

Biscarri, W., Zhao, S. D., & Brunner, R. J. (2018). A simple and fast method for computing the Poisson binomial distribution function. Computational Statistics and Data Analysis, 122, 92-100. https://doi.org/10.1016/j.csda.2018.01.007

Dong, S., Li, J., Kim, M. H., Cho, J., Park, S. J., Nguyen, T. H., & Eden, J. G. (2018). Deactivation of Legionella Pneumophila in municipal wastewater by ozone generated in arrays of microchannel plasmas. Journal of Physics D: Applied Physics, 51(25), [255501]. https://doi.org/10.1088/1361-6463/aac379

Dominguez, V. R., & Malhi, R. S. (2018). Foreword. American Anthropologist, 120(2), 328-329. https://doi.org/10.1111/aman.13041

Showmaker, K. C., Walden, K. K. O., Fields, C. J., Lambert, K. N., & Hudson, M. (2018). Genome sequence of the soybean cyst nematode (Heterodera glycines) endosymbiont "Candidatus Cardinium hertigii" strain cHgTN10. Genome Announcements, 6(26), [e00624-18]. https://doi.org/10.1128/genomeA.00624-18

Grigorev, K., Kliver, S., Dobrynin, P., Komissarov, A., Wolfsberger, W., Krasheninnikova, K., ... Oleksyk, T. K. (2018). Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola. GigaScience, 7(6), [giy025]. https://doi.org/10.1093/gigascience/giy025

Bortolini, M. C., Dominguez, V. R., & Malhi, R. S. (2018). Interview with Maria Cátira Bortolini, Anthropological Geneticist. American Anthropologist, 120(2), 343-344. https://doi.org/10.1111/aman.13042

Hylemon, P. B., Harris, S. C., & Ridlon, J. M. (2018). Metabolism of hydrogen gases and bile acids in the gut microbiome. FEBS Letters, 592(12), 2070-2082. https://doi.org/10.1002/1873-3468.13064

Tucker, E. K., & Nowak, R. A. (2018). Methylmercury alters proliferation, migration, and antioxidant capacity in human HTR8/SV-neo trophoblast cells. Reproductive Toxicology, 78, 60-68. https://doi.org/10.1016/j.reprotox.2018.03.008

Soliman, A., MacKay, A. J., Schmidt, A., Allan, B., & Wang, S. (Accepted/In press). Quantifying the geographic distribution of building coverage across the US for urban sustainability studies. Computers, Environment and Urban Systems. https://doi.org/10.1016/j.compenvurbsys.2018.05.010

Miller, D. J. (2018). Review: The epic journey of sperm through the female reproductive tract. Animal, 12(s1), s110-s120. https://doi.org/10.1017/S1751731118000526

Clayton, J. B., Gomez, A., Amato, K., Knights, D., Travis, D. A., Blekhman, R., ... Johnson, T. J. (2018). The gut microbiome of nonhuman primates: Lessons in ecology and evolution. American journal of primatology, 80(6), [e22867]. https://doi.org/10.1002/ajp.22867

Mallott, E. K., Garber, P. A., & Malhi, R. S. (2018). Trnl outperforms rbcl as a DNA metabarcoding marker when compared with the observed plant component of the diet of wild white-faced capuchins (cebus capucinus, primates). PloS one, 13(6), [e0199556]. https://doi.org/10.1371/journal.pone.0199556

Harris, S. C., Devendran, S., Méndez- García, C., Mythen, S. M., Wright, C. L., Fields, C. J., ... Ridlon, J. M. (Accepted/In press). Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243TGut Microbes, 1-17. https://doi.org/10.1080/19490976.2018.1458180

Vachaspati, P., & Warnow, T. (2018). SIESTA: Enhancing searches for optimal supertrees and species trees. BMC genomics, 19, [252]. https://doi.org/10.1186/s12864-018-4621-1

Nute, M., Chou, J., Molloy, E. K., & Warnow, T. (2018). The performance of coalescent-based species tree estimation methods under models of missing data. BMC genomics, 19, [286]. https://doi.org/10.1186/s12864-018-4619-8

Nelson, E. (2018). The significance of cholesterol and its metabolite, 27-hydroxycholesterol in breast cancer. Molecular and Cellular Endocrinology, 466, 73-80. https://doi.org/10.1016/j.mce.2017.09.021

Josek, T., Allan, B. F., & Alleyne, M. (2018). Morphometric Analysis of Chemoreception Organ in Male and Female Ticks (Acari: Ixodidae). Journal of medical entomology, 55(3), 547-552. https://doi.org/10.1093/jme/tjx232

Lindo, J., Rogers, M., Mallott, E. K., Petzelt, B., Mitchell, J., Archer, D., ... DeGiorgio, M. (2018). Patterns of Genetic Coding Variation in a Native American Population before and after European Contact. American Journal of Human Genetics, 102(5), 806-815. https://doi.org/10.1016/j.ajhg.2018.03.008

Li, Q., Lawrence, C. R., Nowak, R. A., Flaws, J. A., Bagchi, M. K., & Bagchi, I. C. (2018). Bisphenol A and phthalates modulate peritoneal macrophage function in female mice involving SYMD2-H3K36 dimethylation. Endocrinology, 159(5), 2216-2228. https://doi.org/10.1210/en.2017-03000

Lee-Thacker, S., Choi, Y., Taniuchi, I., Takarada, T., Yoneda, Y., Ko, C., & Jo, M. (2018). Core binding factor b expression in ovarian granulosa cells is essential for female fertility. Endocrinology, 159(5), 2094-2109. https://doi.org/10.1210/en.2018-00011

Laurent, H. K., Goodman, S. H., Stowe, Z. N., Halperin, M., Khan, F., Wright, D., ... Knight, B. (2018). Course of ante-and postnatal depressive symptoms related to mothers' HPA axis regulation. Journal of Abnormal Psychology, 127(4), 404-416. https://doi.org/10.1037/abn0000348

Ishida, Y., Gugala, N. A., Georgiadis, N. J., & Roca, A. L. (2018). Evolutionary and demographic processes shaping geographic patterns of genetic diversity in a keystone species, the African forest elephant (Loxodonta cyclotis). Ecology and Evolution, 8(10), 4919-4931. https://doi.org/10.1002/ece3.4062

Akpertey, A., Singh, R. J., Diers, B. W., Graef, G. L., Mian, M. A. R., Shannon, J. G., ... Nelson, R. L. (2018). Genetic introgression from Glycine tomentella to soybean to increase seed yield. Crop Science, 58(3), 1277-1291. https://doi.org/10.2135/cropsci2017.07.0445

Swaminathan, S., Abeysekara, N. S., Knight, J. M., Liu, M., Dong, J., Hudson, M., ... Cianzio, S. R. (2018). Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations. Theoretical and Applied Genetics, 131(5), 1047-1062. https://doi.org/10.1007/s00122-018-3057-y

Doden, H., Sallam, L. A., Devendran, S., Ly, L., Doden, G., Daniel, S. L., ... Ridlon, J. M. (2018). Metabolism of oxo-bile acids and characterization of recombinant 12α- hydroxysteroid dehydrogenases from bile acid 7α-dehydroxylating human gut bacteria. Applied and environmental microbiology, 84(10), [e00235-18]. https://doi.org/10.1128/AEM.00235-18

Lin, H., Chen, C., Wang, J., Qi, J., Jin, D., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Self-healing attack-resilient PMU network for power system operation. IEEE Transactions on Smart Grid, 9(3), 1551-1565. https://doi.org/10.1109/TSG.2016.2593021

Bardill, J., Bader, A. C., Garrison, N. A., Bolnick, D. A., Raff, J. A., Walker, A., & Malhi, R. S. (2018). Advancing the ethics of paleogenomics. Science, 360(6387), 384-385. https://doi.org/10.1126/science.aaq1131

Ren, Y., Reddy, J. S., Pottier, C., Sarangi, V., Tian, S., Sinnwell, J. P., ... Asmann, Y. W. (2018). Identification of missing variants by combining multiple analytic pipelines. BMC bioinformatics, 19(1), [139]. https://doi.org/10.1186/s12859-018-2151-0

Chung, K., Kalbarczyk, Z. T., & Iyer, R. K. (2018). Poster: Indirect cyber attacks by perturbation of environment control: A data driven attack model. In Proceedings of the 5th Annual Symposium and Bootcamp on Hot Topics in the Science of Security, HoTSoS 2018 [3191681] Association for Computing Machinery. https://doi.org/10.1145/3190619.3191681

Nowak, R. A. (2018). An interview with Dr Linda C. Giudice. Biology of reproduction, 98(4), 437-439. https://doi.org/10.1093/biolre/ioy022

Springer, M. S., Murphy, W. J., & Roca, A. L. (2018). Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals. Molecular Phylogenetics and Evolution, 121, 158-165. https://doi.org/10.1016/j.ympev.2018.01.007

Richardson, K. A., Hannon, P. R., Johnson-Walker, Y. J., Myint, M. S., Flaws, J. A., & Nowak, R. A. (2018). Di (2-ethylhexyl) phthalate (DEHP) alters proliferation and uterine gland numbers in the uteri of adult exposed mice. Reproductive Toxicology, 77, 70-79. https://doi.org/10.1016/j.reprotox.2018.01.006

Liang, X., Lu, N., Chang, L. C., Nguyen, T. H., & Massoudieh, A. (2018). Evaluation of bacterial run and tumble motility parameters through trajectory analysis. Journal of Contaminant Hydrology, 211, 26-38. https://doi.org/10.1016/j.jconhyd.2018.03.002

Laurent, H. K., Wright, D., & Finnegan, M. (2018). Mindfulness-related differences in neural response to own infant negative versus positive emotion contexts. Developmental Cognitive Neuroscience, 30, 70-76. https://doi.org/10.1016/j.dcn.2018.01.002

Pomatto, V., Cottone, E., Cocci, P., Mozzicafreddo, M., Mosconi, G., Nelson, E., ... Bovolin, P. (2018). Plasticizers used in food-contact materials affect adipogenesis in 3T3-L1 cells. Journal of Steroid Biochemistry and Molecular Biology, 178, 322-332. https://doi.org/10.1016/j.jsbmb.2018.01.014

Mythen, S. M., Devendran, S., Méndez-García, C., Cann, I., & Ridlon, J. M. (2018). Targeted synthesis and characterization of a gene cluster encoding NAD(P)H-dependent 3α-, 3β-, and 12α-hydroxysteroid dehydrogenases from Eggerthella CAG:298, a gut metagenomic sequence. Applied and environmental microbiology, 84(7), [e02475-17]. https://doi.org/10.1128/AEM.02475-17

Vazquez-Bravo, B., Gonçalves, K., Shisler, J. L., & Marinas, B. J. (2018). Adenovirus Replication Cycle Disruption from Exposure to Polychromatic Ultraviolet Irradiation. Environmental Science and Technology, 52(6), 3652-3659. https://doi.org/10.1021/acs.est.7b06082

Branscomb, E., Biancalani, T., Goldenfeld, N., & Russell, M. (2018). Escapement mechanisms and the conversion of disequilibria; the engines of creation. Physics Reports, 677, 1-60. https://doi.org/10.1016/j.physrep.2017.02.001

Potter, B. A., Beaudoin, A. B., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., ... Surovell, T. (2018). Arrival routes of first Americans uncertain. Science, 359(6381), 1224-1225. https://doi.org/10.1126/science.aar8233

Christensen, S., Molloy, E. K., Vachaspati, P., & Warnow, T. (2018). OCTAL: Optimal Completion of gene trees in polynomial time. Algorithms for Molecular Biology, 13(1), [6]. https://doi.org/10.1186/s13015-018-0124-5

Massalha, N., Dong, S., Plewa, M. J., Borisover, M., & Nguyen, T. H. (2018). Spectroscopic Indicators for Cytotoxicity of Chlorinated and Ozonated Effluents from Wastewater Stabilization Ponds and Activated Sludge. Environmental Science and Technology, 52(5), 3167-3174. https://doi.org/10.1021/acs.est.7b05510

Ferrando, D., Toubiana, D., Kandiyote, N. S., Nguyen, T. H., Nejidat, A., & Herzberg, M. (2018). Ambivalent role of calcium in the viscoelastic properties of extracellular polymeric substances and the consequent fouling of reverse osmosis membranes. Desalination, 429, 12-19. https://doi.org/10.1016/j.desal.2017.12.006

Eiserhardt, W. L., Antonelli, A., Bennett, D. J., Botigué, L. R., Burleigh, J. G., Dodsworth, S., ... Baker, W. J. (2018). A roadmap for global synthesis of the plant tree of life. American journal of botany, 105(3), 614-622. https://doi.org/10.1002/ajb2.1041

Keesing, F., Ostfeld, R. S., Young, T. P., & Allan, B. F. (2018). Cattle and rainfall affect tick abundance in central Kenya. Parasitology, 145(3), 345-354. https://doi.org/10.1017/S003118201700155X

Kannan, A., Bhurke, A., Sitruk-Ware, R., Lalitkumar, P. G., Gemzell-Danielsson, K., Williams, A. R. W., ... Bagchi, I. C. (2018). Characterization of Molecular Changes in Endometrium Associated With Chronic Use of Progesterone Receptor Modulators: Ulipristal Acetate Versus Mifepristone. Reproductive Sciences, 25(3), 320-328. https://doi.org/10.1177/1933719117746764

Winters, R. A., Nettenstrom, L. M., Lopez, D. G., Willenburg, K. L., Vishwanath, R., Bovin, N. V., & Miller, D. J. (2018). Effect of sorting boar spermatozoa by sex chromosomes on oviduct cell binding. Theriogenology, 108, 22-28. https://doi.org/10.1016/j.theriogenology.2017.11.010

Hu, R., Morley, M. P., Brandimarto, J., Tucker, N. R., Parsons, V. A., Zhao, S. D., ... Cappola, T. P. (2018). Genetic Reduction in Left Ventricular Protein Kinase C-α and Adverse Ventricular Remodeling in Human Subjects. Circulation. Genomic and precision medicine, 11(3), e001901. https://doi.org/10.1161/CIRCGEN.117.001901

Harris, S. C., Devendran, S., Alves, J. M. P., Mythen, S. M., Hylemon, P. B., & Ridlon, J. M. (2018). Identification of a gene encoding a flavoprotein involved in bile acid metabolism by the human gut bacterium Clostridium scindens ATCC 35704. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1863(3), 276-283. https://doi.org/10.1016/j.bbalip.2017.12.001

Mallott, E. K., Amato, K. R., Garber, P. A., & Malhi, R. S. (2018). Influence of fruit and invertebrate consumption on the gut microbiota of wild white-faced capuchins (Cebus capucinus). American journal of physical anthropology, 165(3), 576-588. https://doi.org/10.1002/ajpa.23395

Raulo, A., Ruokolainen, L., Lane, A., Amato, K., Knight, R., Leigh, S., ... Tecot, S. R. (2018). Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality. Journal of Animal Ecology, 87(2), 388-399. https://doi.org/10.1111/1365-2656.12781

Vidimar, V., Chakravarti, D., Bulun, S. E., Yin, P., Nowak, R. A., Wei, J. J., & Kim, J. J. (2018). The AKT/BCL-2 Axis Mediates Survival of Uterine Leiomyoma in a Novel 3D Spheroid Model. Endocrinology, 159(3), 1453-1462. https://doi.org/10.1210/en.2017-03191

Molloy, E. K., & Warnow, T. (2018). To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods. Systematic biology, 67(2), 285-303. https://doi.org/10.1093/sysbio/syx077

Greenwood, A. D., O'Brien, S. P., Roca, A. L., & Eiden, M. V. (2018). Transmission, evolution, and endogenization: Lessons learned from recent retroviral invasions. Microbiology and Molecular Biology Reviews, 82(1), [e00044-17]. https://doi.org/10.1128/MMBR.00044-17

Ryerson, M. R., & Shisler, J. L. (2018). Characterizing the effects of insertion of a 5.2 kb region of a VACV genome, which contains known immune evasion genes, on MVA immunogenicity. Virus Research, 246, 55-64. https://doi.org/10.1016/j.virusres.2018.01.004

Gernat, T., Rao, V. D., Middendorf, M., Dankowicz, H., Goldenfeld, N. D., & Robinson, G. E. (2018). Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honeybee social networks. Proceedings of the National Academy of Sciences of the United States of America, 115(7), 1433-1438. https://doi.org/10.1073/pnas.1713568115

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