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Carl R. Woese Institute for Genomic Biology

Where Science Meets Society

Research Areas

Głowacka, K., Kromdijk, J., Kucera, K., Xie, J., Cavanagh, A. P., Leonelli, L., ... Long, S. P. (2018). Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop. Nature Communications, 9(1), [868]. DOI: 10.1038/s41467-018-03231-x

Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R., & Yu, Q. (2018). Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane. Scientific Reports, 8(1), [4415]. DOI: 10.1038/s41598-018-22798-5

Wang, Z., Dien, B. S., Rausch, K. D., Tumbleson, M. E., & Singh, V. (2018). Fermentation of undetoxified sugarcane bagasse hydrolyzates using a two stage hydrothermal and mechanical refining pretreatment. Bioresource Technology, 261, 313-321. DOI: 10.1016/j.biortech.2018.04.018

Liu, J., Chatham, L., Aryal, R., Yu, Q., & Ming, R. (2018). Differential methylation and expression of HUA1 ortholog in three sex types of papaya. Plant Science, 272, 99-106. DOI: 10.1016/j.plantsci.2018.04.001

Bishop, K. A., Lemonnier, P., Quebedeaux, J. C., Montes, C. M., Leakey, A. D. B., & Ainsworth, E. A. (Accepted/In press). Similar photosynthetic response to elevated carbon dioxide concentration in species with different phloem loading strategies. Photosynthesis research, 1-12. DOI: 10.1007/s11120-018-0524-x

Demkovich, M. R., Siegel, J. P., Walse, S. S., & Berenbaum, M. R. (2018). Impact of agricultural adjuvants on the toxicity of the diamide insecticides chlorantraniliprole and flubendiamide on different life stages of the navel orangeworm (Amyelois transitella). Journal of Pest Science, 91(3), 1127-1136. DOI: 10.1007/s10340-018-0959-z

Caetano-Anollés, K., Caetano-Anollés, D., Nasir, A., Kim, K. M., & Caetano-Anollés, G. (2018). Order and polarity in character state transformation models that root the tree of life. Biochimie, 149, 135-136. DOI: 10.1016/j.biochi.2018.04.001

Ainsworth, E. A., & Lemonnier, P. (2018). Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]? Current Opinion in Plant Biology, 43, 50-56. DOI: 10.1016/j.pbi.2017.12.003

Johnson, R. M., Harpur, B. A., Dogantzis, K. A., Zayed, A., & Berenbaum, M. R. (Accepted/In press). Genomic footprint of evolution of eusociality in bees: floral food use and CYPome “blooms”. Insectes Sociaux, 1-10. DOI: 10.1007/s00040-018-0631-x

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (Accepted/In press). Publisher Correction: Farming with crops and rocks to address global climate, food and soil security. Nature Plants. DOI: 10.1038/s41477-018-0162-5

Kumar, D., Juneja, A., & Singh, V. (2018). Fermentation technology to improve productivity in dry grind corn process for bioethanol production. Fuel Processing Technology, 173, 66-74. DOI: 10.1016/j.fuproc.2018.01.014

Somavat, P., Kumar, D., & Singh, V. (2018). Techno-economic feasibility analysis of blue and purple corn processing for anthocyanin extraction and ethanol production using modified dry grind process. Industrial Crops and Products, 115, 78-87. DOI: 10.1016/j.indcrop.2018.02.015

Petronikolou, N., Hollatz, A. J., Schuler, M. A., & Nair, S. K. (2018). Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside. ChemBioChem, 19(8), 784-788. DOI: 10.1002/cbic.201700679

Wolz, K. J., Branham, B. E., & DeLucia, E. H. (2018). Reduced nitrogen losses after conversion of row crop agriculture to alley cropping with mixed fruit and nut trees. Agriculture, Ecosystems and Environment, 258, 172-181. DOI: 10.1016/j.agee.2018.02.024

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., ... Wang, K. (2018). Chromosome Nomenclature and Cytological Characterization of Sacred Lotus. Cytogenetic and Genome Research, 153(4), 223-231. DOI: 10.1159/000486777

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., ... McNamara, N. P. (2018). Consensus, uncertainties and challenges for perennial bioenergy crops and land use. GCB Bioenergy, 10(3), 150-164. DOI: 10.1111/gcbb.12488

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Farming with crops and rocks to address global climate, food and soil security /631/449 /706/1143 /704/47 /704/106 perspective. Nature Plants, 4(3), 138-147. DOI: 10.1038/s41477-018-0108-y

Wolz, K. J., Lovell, S. T., Branham, B. E., Eddy, W. C., Keeley, K., Revord, R. S., ... DeLucia, E. H. (2018). Frontiers in alley cropping: Transformative solutions for temperate agriculture. Global change biology, 24(3), 883-894. DOI: 10.1111/gcb.13986

Gomez-Casanovas, N., Delucia, N. J., Bernacchi, C. J., Boughton, E. H., Sparks, J. P., Chamberlain, S. D., & Delucia, E. H. (2018). Grazing alters net ecosystem C fluxes and the global warming potential of a subtropical pasture. Ecological Applications, 28(2), 557-572. DOI: 10.1002/eap.1670

Wang, Z., Sharma, V., Dien, B. S., & Singh, V. (2018). High-conversion hydrolysates and corn sweetener production in dry-grind corn process. Cereal Chemistry, 95(2), 302-311. DOI: 10.1002/cche.10030

Kumar, D., Long, S. P., & Singh, V. (2018). Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation. GCB Bioenergy, 10(2), 92-107. DOI: 10.1111/gcbb.12478

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B., & Ort, D. R. (2018). Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis. Plant physiology, 176(2), 1215-1232. DOI: 10.1104/pp.17.01401

Jin, Z., Ainsworth, E. A., Leakey, A. D. B., & Lobell, D. B. (2018). Increasing drought and diminishing benefits of elevated carbon dioxide for soybean yields across the US Midwest. Global change biology, 24(2), e522-e533. DOI: 10.1111/gcb.13946

Miao, G., Guan, K., Yang, X., Bernacchi, C. J., Berry, J. A., DeLucia, E. H., ... Masters, M. D. (2018). Sun-Induced Chlorophyll Fluorescence, Photosynthesis, and Light Use Efficiency of a Soybean Field from Seasonally Continuous Measurements. Journal of Geophysical Research: Biogeosciences, 123(2), 610-623. DOI: 10.1002/2017JG004180

Slattery, R. A., Walker, B. J., Weber, A. P. M., & Ort, D. R. (2018). The impacts of fluctuating light on crop performance. Plant physiology, 176(2), 990-1003. DOI: 10.1104/pp.17.01234

Wolz, K. J., & DeLucia, E. H. (2018). Alley cropping: Global patterns of species composition and function. Agriculture, Ecosystems and Environment, 252, 61-68. DOI: 10.1016/j.agee.2017.10.005

Liu, J., Sharma, A., Niewiara, M. J., Singh, R., Ming, R., & Yu, Q. (2018). Papain-like cysteine proteases in Carica papaya: Lineage-specific gene duplication and expansion. BMC genomics, 19(1), [26]. DOI: 10.1186/s12864-017-4394-y

Quindlen, J. F., Topcu, U., Chowdhary, G., & How, J. P. (2018). Active sampling-based binary verification of dynamical systems. In AIAA Guidance, Navigation, and Control (210039 ed.). American Institute of Aeronautics and Astronautics Inc, AIAA. DOI: 10.2514/6.2018-1107

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P., & Dietze, M. C. (2018). BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production. GCB Bioenergy, 10(1), 61-71. DOI: 10.1111/gcbb.12420

Kolbe, A. R., Studer, A. J., & Cousins, A. B. (2018). Biochemical and transcriptomic analysis of maize diversity to elucidate drivers of leaf carbon isotope composition. Functional Plant Biology, 45(5), 489-500. DOI: 10.1071/FP17265

Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E., & Singh, V. (Accepted/In press). Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production. JAOCS, Journal of the American Oil Chemists' Society. DOI: 10.1002/aocs.12070

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C. J., & DeLucia, E. H. (2018). Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States. Biomass and Bioenergy, 108, 312-322. DOI: 10.1016/j.biombioe.2017.11.020

Zhu, X., Liang, C., Masters, M. D., Kantola, I. B., & Delucia, E. H. (Accepted/In press). The impacts of four potential bioenergy crops on soil carbon dynamics as shown by biomarker analyses and DRIFT spectroscopy. GCB Bioenergy. DOI: 10.1111/gcbb.12520 

Somavat, P., Li, Q., Kumar, D., de Mejia, E. G., Liu, W., Rausch, K. D., ... Singh, V. (2017). A new lab scale corn dry milling protocol generating commercial sized flaking grits for quick estimation of coproduct yield and composition. Industrial Crops and Products, 109, 92-100. DOI: 10.1016/j.indcrop.2017.08.013

Chen, C., Somavat, P., Singh, V., & Gonzalez de Mejia, E. (2017). Chemical characterization of proanthocyanidins in purple, blue, and red maize coproducts from different milling processes and their anti-inflammatory properties. Industrial Crops and Products, 109, 464-475. DOI: 10.1016/j.indcrop.2017.08.046

Leisner, C. P., Yendrek, C. R., & Ainsworth, E. A. (2017). Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress. BMC Plant Biology, 17(1), [242]. DOI: 10.1186/s12870-017-1188-y

Moffett, A. S., Bender, K. W., Huber, S. C., & Shukla, D. (2017). Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation. Biophysical Journal, 113(11), 2354-2363. DOI: 10.1016/j.bpj.2017.08.059

Liao, L. H., Wu, W. Y., & Berenbaum, M. R. (2017). Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food. Scientific Reports, 7(1), [15924]. DOI: 10.1038/s41598-017-15066-5

Yendrek, C. R., Erice, G., Montes, C. M., Tomaz, T., Sorgini, C. A., Brown, P. J., ... Ainsworth, E. A. (2017). Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner. Plant Cell and Environment, 40(12), 3088-3100. DOI: 10.1111/pce.13075

Chen, M. H., Kim, S. M., Raab, R. M., Li, X., & Singh, V. (2017). Heterologous expression of thermoregulated xylanases in switchgrass reduces the amount of exogenous enzyme required for saccharification. Biomass and Bioenergy, 107, 305-310. DOI: 10.1016/j.biombioe.2017.10.028

Wang, P., Marsh, E. L., Ainsworth, E. A., Leakey, A. D. B., Sheflin, A. M., & Schachtman, D. P. (2017). Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O3. Scientific Reports, 7(1), [15019]. DOI: 10.1038/s41598-017-14936-2

Song, Q., Wang, Y., Qu, M., Ort, D. R., & Zhu, X. G. (2017). The impact of modifying photosystem antenna size on canopy photosynthetic efficiency—Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes. Plant Cell and Environment, 40(12), 2946-2957. DOI: 10.1111/pce.13041

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., ... Tuskan, G. A. (2017). The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. Nature Communications, 8(1), [1899]. DOI: 10.1038/s41467-017-01491-7

Jaiswal, D., De Souza, A. P., Larsen, S., Lebauer, D. S., Miguez, F. E., Sparovek, G., ... Long, S. P. (2017). Brazilian sugarcane ethanol as an expandable green alternative to crude oil use. Nature Climate Change, 7(11), 788-792. DOI: 10.1038/nclimate3410

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M., & Berenbaum, M. R. (2017). Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation. Molecular Ecology, 26(21), 6021-6035. DOI: 10.1111/mec.14348

Caetano-Anollés, G. (2017). RubisCO and the Search for Biomolecular Culprits of Planetary Change. BioEssays, 39(11), [1700174]. DOI: 10.1002/bies.201700174

Malik, S. S., Azem-e-Zahra, S., Kim, K. M., Caetano-Anollés, G., & Nasir, A. (2017). Do viruses exchange genes across superkingdoms of life? Frontiers in Microbiology, 8(OCT), [2110]. DOI: 10.3389/fmicb.2017.02110

Wai, C. M., Zhang, J., Jones, T. C., Nagai, C., & Ming, R. (2017). Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population. BMC Genomics, 18(1), [773]. DOI: 10.1186/s12864-017-4158-8

Black, C. K., Masters, M. D., LeBauer, D. S., Anderson-Teixeira, K. J., & DeLucia, E. H. (2017). Root volume distribution of maturing perennial grasses revealed by correcting for minirhizotron surface effects. Plant and Soil, 419(1-2), 391-404. DOI: 10.1007/s11104-017-3333-7

Studer, A. J., Wang, H., & Doebley, J. F. (2017). Selection during maize domestication targeted a gene network controlling plant and inflorescence architecture. Genetics, 207(2), 755-765. DOI: 10.1534/genetics.117.300071

Kantola, I. B., Masters, M. D., & DeLucia, E. H. (2017). Soil particulate organic matter increases under perennial bioenergy crop agriculture. Soil Biology and Biochemistry, 113, 184-191. DOI: 10.1016/j.soilbio.2017.05.023

Wai, C. M., VanBuren, R., Zhang, J., Huang, L., Miao, W., Edger, P. P., ... Ming, R. (2017). Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple. Plant Journal, 92(1), 19-30. DOI: 10.1111/tpj.13630

Caetano-Anollés, G., Minhas, B. F., Aziz, F., Mughal, F., Shahzad, K., Tal, G., ... Kim, K. M. (2017). The compressed vocabulary of the proteins of archaea. In Biocommunication of Archaea (pp. 147-174). Springer International Publishing. DOI: 10.1007/978-3-319-65536-9_10

Taylor, S. H., & Long, S. P. (2017). Slow induction of photosynthesis on shade to sun transitions in wheat may cost at least 21% of productivity. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1730), [20160543]. DOI: 10.1098/rstb.2016.0543

Li, Q., Somavat, P., Singh, V., Chatham, L., & Gonzalez de Mejia, E. (2017). A comparative study of anthocyanin distribution in purple and blue corn coproducts from three conventional fractionation processes. Food Chemistry, 231, 332-339. DOI: 10.1016/j.foodchem.2017.03.146

Zeng, F., Lian, X., Zhang, G., Yu, X., Bradley, C. A., & Ming, R. (2017). A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts. Genomics Data, 13, 54-63. DOI: 10.1016/j.gdata.2017.07.007

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P., & Zhu, X. G. (2017). Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing. Bioenergy Research, 10(3), 626-634. DOI: 10.1007/s12155-017-9823-x

Sharma, A., Wai, C. M., Ming, R., & Yu, Q. (2017). Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis. Genome biology and evolution, 9(9), 2170-2190. DOI: 10.1093/gbe/evx161

Wolz, K. J., Wertin, T. M., Abordo, M., Wang, D., & Leakey, A. D. B. (2017). Diversity in stomatal function is integral to modelling plant carbon and water fluxes. Nature Ecology and Evolution, 1(9), 1292-1298. DOI: 10.1038/s41559-017-0238-z

Ramchandran, D., Moose, S. P., Low, K., Arp, J., Parsons, C. M., & Singh, V. (2017). Ethanol yields and elevated amino acids in distillers dried grains with solubles from maize grain with higher concentrations of essential amino acids. Industrial Crops and Products, 103, 244-250. DOI: 10.1016/j.indcrop.2017.03.049

Xue, A., Li, Z., Cai, M., Zhang, Q., Zhang, X., Ming, R., & Zhang, J. (2017). Identification and Characterization of microRNAs from Saccharum officinarum L by Deep Sequencing. Tropical Plant Biology, 10(2-3), 134-150. DOI: 10.1007/s12042-017-9190-y

Sanz-Sáez, Á., Koester, R. P., Rosenthal, D. M., Montes, C. M., Ort, D. R., & Ainsworth, E. A. (2017). Leaf and canopy scale drivers of genotypic variation in soybean response to elevated carbon dioxide concentration. Global Change Biology, 23(9), 3908-3920. DOI: 10.1111/gcb.13678

Qin, G., Xu, C., Ming, R., Tang, H., Guyot, R., Kramer, E. M., ... Xu, Y. (2017). The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. Plant Journal, 91(6), 1108-1128. DOI: 10.1111/tpj.13625

Shen, Y. H., Lu, B. G., Feng, L., Yang, F. Y., Geng, J. J., Ming, R., & Chen, X. J. (2017). Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq. BMC Genomics, 18(1), [671]. DOI: 10.1186/s12864-017-4072-0

Singh, V., Perraki, A., Kim, S. Y., Shrivastava, S., Lee, J. H., Zhao, Y., ... Huber, S. C. (2017). Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity. Frontiers in Plant Science, 8, [1273]. DOI: 10.3389/fpls.2017.01273

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J., & DeLucia, E. H. (2017). Contribution of above- and belowground bioenergy crop residues to soil carbon. GCB Bioenergy, 9(8), 1333-1343. DOI: 10.1111/gcbb.12411

Joo, E., Zeri, M., Hussain, M. Z., DeLucia, E. H., & Bernacchi, C. J. (2017). Enhanced evapotranspiration was observed during extreme drought from Miscanthus, opposite of other crops. GCB Bioenergy, 9(8), 1306-1319. DOI: 10.1111/gcbb.12448

Nasir, A., Kim, K. M., & Caetano-Anollés, G. (2017). Long-term evolution of viruses: A Janus-faced balance. BioEssays, 39(8), [1700026]. DOI: 10.1002/bies.201700026

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R., & Zhang, J. (2017). Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress. Tree Genetics and Genomes, 13(4), [78]. DOI: 10.1007/s11295-017-1161-9

Allain, M., Konduri, S., Maske, H., Pagilla, P. R., & Chowdhary, G. (2017). Blended Shared Control of a Hydraulic Excavator. IFAC-PapersOnLine, 50(1), 14928-14933. DOI: 10.1016/j.ifacol.2017.08.2541

Kamalapurkar, R., Reish, B., Chowdhary, G., & Dixon, W. E. (2017). Concurrent Learning for Parameter Estimation Using Dynamic State-Derivative Estimators. IEEE Transactions on Automatic Control, 62(7), 3594-3601. [7858671]. DOI: 10.1109/TAC.2017.2671343

Allamraju, R., & Chowdhary, G. (2017). Communication efficient decentralized Gaussian Process Fusion for multi-UAS path planning. In 2017 American Control Conference, ACC 2017 (pp. 4442-4447). [7963639] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.23919/ACC.2017.7963639

Osipychev, D., Tran, D., Sheng, W., & Chowdhary, G. (2017). Human intention-based collision avoidance for autonomous cars. In 2017 American Control Conference, ACC 2017 (pp. 2974-2979). [7963403] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.23919/ACC.2017.7963403

Khanna, M., Wang, W., Hudiburg, T. W., & Delucia, E. H. (2017). The social inefficiency of regulating indirect land use change due to biofuels. Nature Communications, 8, [15513]. DOI: 10.1038/ncomms15513

Nasir, A., Kim, K. M., & Caetano-Anollés, G. (2017). Phylogenetic tracings of proteome size support the gradual accretion of protein structural domains and the early origin of viruses from primordial cells. Frontiers in Microbiology, 8(JUN), [1178]. DOI: 10.3389/fmicb.2017.01178

Ruiz-Vera, U. M., De Souza, A. P., Long, S. P., & Ort, D. R. (2017). The role of sink strength and nitrogen availability in the down-regulation of photosynthetic capacity in field-grown Nicotiana tabacum L. at elevated CO2 concentration. Frontiers in Plant Science, 8, [998]. DOI: 10.3389/fpls.2017.00998

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., ... Georgescu, M. (2017). A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective. GCB Bioenergy, 9(6), 1024-1041. DOI: 10.1111/gcbb.12403

Kayacan, E., Peschel, J. M., & Chowdhary, G. (2017). A self-learning disturbance observer for nonlinear systems in feedback-error learning scheme. Engineering Applications of Artificial Intelligence, 62, 276-285. DOI: 10.1016/j.engappai.2017.04.013

Zeng, F., Wang, C., Zhang, G., Wei, J., Bradley, C. A., & Ming, R. (2017). Draft genome sequence of Cercospora sojina isolate S9, a fungus causing frogeye leaf spot (FLS) disease of soybean. Genomics Data, 12, 79-80. DOI: 10.1016/j.gdata.2017.02.014

Bush, D. S., Lawrance, A., Siegel, J. P., & Berenbaum, M. R. (2017). Orientation of navel orangeworm (lepidoptera: Pyralidae) larvae and adults toward volatiles associated with almond hull split and aspergillus flavus. Environmental Entomology, 46(3), 602-608. DOI: 10.1093/ee/nvx068

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J., & Sparks, J. P. (2017). The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments. Ecological Applications, 27(4), 1199-1209. DOI: 10.1002/eap.1514

Walker, B. J., Orr, D. J., Carmo-Silva, E., Parry, M. A. J., Bernacchi, C. J., & Ort, D. R. (2017). Uncertainty in measurements of the photorespiratory CO2 compensation point and its impact on models of leaf photosynthesis. Photosynthesis Research, 132(3), 245-255. DOI: 10.1007/s11120-017-0369-8

Ainsworth, E. A. (2017). Understanding and improving global crop response to ozone pollution. Plant Journal, 90(5), 886-897. DOI: 10.1111/tpj.13298

Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Myles, L. T., Lehmann, C., Bernacchi, C., ... Lin, J. (2017). Season-long ammonia flux measurements above fertilized corn in central Illinois, USA, using relaxed eddy accumulation. Agricultural and Forest Meteorology, 239, 202-212. DOI: 10.1016/j.agrformet.2017.03.010

Challa, R. K., Zhang, Y. B., Johnston, D. B., Singh, V., Engeseth, N. J., Tumbleson, M., & Rausch, K. D. (2017). Evaporator Fouling Tendencies of Thin Stillage and Concentrates From the Dry Grind Process. Heat Transfer Engineering, 38(7-8), 743-752. DOI: 10.1080/01457632.2016.1206416

Marshall-Colon, A., Long, S. P., Allen, D. K., Allen, G., Beard, D. A., Benes, B., ... Zhu, X. G. (2017). Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform. Frontiers in Plant Science, 8, [786]. DOI: 10.3389/fpls.2017.00786

VanLoocke, A., Twine, T. E., Kucharik, C. J., & Bernacchi, C. J. (2017). Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production. GCB Bioenergy, 9(5), 858-875. DOI: 10.1111/gcbb.12385

Hay, W. T., Bihmidine, S., Mutlu, N., Hoang, K. L., Awada, T., Weeks, D. P., ... Long, S. P. (2017). Enhancing soybean photosynthetic CO2 assimilation using a cyanobacterial membrane protein, ictB. Journal of Plant Physiology, 212, 58-68. DOI: 10.1016/j.jplph.2017.02.003

Balasubramanian, S., Nelson, A., Koloutsou-Vakakis, S., Lin, J., Rood, M. J., Myles, L. T., & Bernacchi, C. (2017). Evaluation of DeNitrification DeComposition model for estimating ammonia fluxes from chemical fertilizer application. Agricultural and Forest Meteorology, 237-238, 123-134. DOI: 10.1016/j.agrformet.2017.02.006

Koc, I., & Caetano-Anolles, G. (2017). The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data. PLoS ONE, 12(5), [e0176129]. DOI: 10.1371/journal.pone.0176129

Slattery, R. A., Vanloocke, A., Bernacchi, C. J., Zhu, X. G., & Ort, D. R. (2017). Photosynthesis, light use efficiency, and yield of reduced-chlorophyll soybean mutants in field conditions. Frontiers in Plant Science, 8, [549]. DOI: 10.3389/fpls.2017.00549

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M., & Ort, D. R. (2017). Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana. Plant Cell, 29(4), 808-823. DOI: 10.1105/tpc.16.00775

Srinivasan, V., Kumar, P., & Long, S. P. (2017). Decreasing, not increasing, leaf area will raise crop yields under global atmospheric change. Global Change Biology, 23(4), 1626-1635. DOI: 10.1111/gcb.13526

Huang, H., Moreau, R. A., Powell, M. J., Wang, Z., Kannan, B., Altpeter, F., ... Singh, V. (2017). Evaluation of the quantity and composition of sugars and lipid in the juice and bagasse of lipid producing sugarcane. Biocatalysis and Agricultural Biotechnology, 10, 148-155. DOI: 10.1016/j.bcab.2017.03.003

Goldberg, E. E., Otto, S. P., Vamosi, J. C., Mayrose, I., Sabath, N., Ming, R., & Ashman, T. L. (2017). Macroevolutionary synthesis of flowering plant sexual systems. Evolution, 71(4), 898-912. DOI: 10.1111/evo.13181

Santiago, T. R., Lopes, C. A., Caetano-Anollés, G., & Mizubuti, E. S. G. (2017). Phylotype and sequevar variability of Ralstonia solanacearum in Brazil, an ancient centre of diversity of the pathogen. Plant Pathology, 66(3), 383-392. DOI: 10.1111/ppa.12586

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P., & DeLucia, E. H. (2017). Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering. Biology Letters, 13(4), [0714]. DOI: 10.1098/rsbl.2016.0714

Colson, P., La Scola, B., Levasseur, A., Caetano-Anollés, G., & Raoult, D. (2017). Mimivirus: Leading the way in the discovery of giant viruses of amoebae. Nature Reviews Microbiology, 15(4), 243-254. DOI: 10.1038/nrmicro.2016.197

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., ... Huber, S. C. (2017). Autophosphorylation-based calcium (Ca2+) sensitivity priming and Ca2+/calmodulin inhibition of Arabidopsis thaliana Ca2+-dependent protein kinase 28 (CPK28). Journal of Biological Chemistry, 292(10), 3988-4002. DOI: 10.1074/jbc.M116.763243

Nasir, A., & Caetano-Anollés, G. (2017). Identification of capsid/coat related protein folds and their utility for virus classification. Frontiers in Microbiology, 8(MAR), [380]. DOI: 10.3389/fmicb.2017.00380

Mao, W., Schuler, M. A., & Berenbaum, M. R. (2017). Disruption of quercetin metabolism by fungicide affects energy production in honey bees (Apis mellifera). Proceedings of the National Academy of Sciences of the United States of America, 114(10), 2538-2543. DOI: 10.1073/pnas.1614864114

Roy, S., Maske, H., Chowdhary, G., & Crick, C. (2017). Teaching and learning using semantic labels. In HRI 2017 - Companion of the 2017 ACM/IEEE International Conference on Human-Robot Interaction (pp. 271-272). IEEE Computer Society. DOI: 10.1145/3029798.3038335

Soleh, M. A., Tanaka, Y., Kim, S. Y., Huber, S. C., Sakoda, K., & Shiraiwa, T. (2017). Identification of large variation in the photosynthetic induction response among 37 soybean [Glycine max (L.) Merr.] genotypes that is not correlated with steady-state photosynthetic capacity. Photosynthesis Research, 131(3), 305-315. DOI: 10.1007/s11120-016-0323-1

Zhu, P., Zhuang, Q., Eva, J., & Bernacchi, C. (2017). Importance of biophysical effects on climate warming mitigation potential of biofuel crops over the conterminous United States. GCB Bioenergy, 9(3), 577-590. DOI: 10.1111/gcbb.12370

Siebers, M. H., Slattery, R. A., Yendrek, C. R., Locke, A. M., Drag, D., Ainsworth, E. A., ... Ort, D. R. (2017). Simulated heat waves during maize reproductive stages alter reproductive growth but have no lasting effect when applied during vegetative stages. Agriculture, Ecosystems and Environment, 240, 162-170. DOI: 10.1016/j.agee.2016.11.008

Chen, Y., Zhang, Q., Hu, W., Zhang, X., Wang, L., Hua, X., ... Zhang, J. (2017). Evolution and expression of the fructokinase gene family in Saccharum. BMC Genomics, 18(1), [197]. DOI: 10.1186/s12864-017-3535-7

Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., ... Jin, Y. S. (2017). Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae. ACS Synthetic Biology, 6(2), 276-283. DOI: 10.1021/acssynbio.6b00167

Liao, L. H., Wu, W. Y., & Berenbaum, M. R. (2017). Impacts of dietary phytochemicals in the presence and absence of pesticides on longevity of honey bees (Apis mellifera). Insects, 8(1), [22]. DOI: 10.3390/insects8010022

Liao, Z., Yu, Q., & Ming, R. (2017). Development of male-specific markers and identification of sex reversal mutants in papaya. Euphytica, 213(2), [53]. DOI: 10.1007/s10681-016-1806-z

Caetano-Anollés, D., & Caetano-Anollés, G. (2017). Commentary: History of the ribosome and the origin of translation. Frontiers in Molecular Biosciences, 3(JAN), [87]. DOI: 10.3389/fmolb.2016.00087

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., ... Zaehle, S. (2017). A roadmap for improving the representation of photosynthesis in Earth system models. New Phytologist, 213(1), 22-42. DOI: 10.1111/nph.14283

Song, Q., Chen, D., Long, S. P., & Zhu, X. G. (2017). A user-friendly means to scale from the biochemistry of photosynthesis to whole crop canopies and production in time and space – development of Java WIMOVAC. Plant Cell and Environment, 40(1), 51-55. DOI: 10.1111/pce.12816

Huang, P., Studer, A. J., Schnable, J. C., Kellogg, E. A., & Brutnell, T. P. (2017). Cross species selection scans identify components of C4 photosynthesis in the grasses. Journal of Experimental Botany, 68(2), 127-135. DOI: 10.1093/jxb/erw256

Black, C. K., Davis, S. C., Hudiburg, T. W., Bernacchi, C. J., & DeLucia, E. H. (2017). Elevated CO2 and temperature increase soil C losses from a soybean–maize ecosystem. Global Change Biology, 23(1), 435-445. DOI: 10.1111/gcb.13378

Huang, H., Wang, Z., Pan, S. C., Shoup, L. M., Felix, T. L., Perkins, J. B., ... Singh, V. (2017). Fungal pretreatment to improve digestibility of corn stover for animal feed. Transactions of the ASABE, 60(3), 973-979. DOI: 10.13031/trans.12042

Yendrek, C. R., Tomaz, T., Montes, C. M., Cao, Y., Morse, A. M., Brown, P. J., ... Ainsworth, E. A. (2017). High-throughput phenotyping of maize leaf physiological and biochemical traits using hyperspectral reflectance. Plant Physiology, 173(1), 614-626. DOI: 10.1104/pp.16.01447

Kim, S. M., Tumbleson, M. E., Rausch, K. D., & Singh, V. (2017). Impact of disk milling on corn stover pretreated at commercial scale. Bioresource Technology, 232, 297-303. DOI: 10.1016/j.biortech.2017.02.005

Pignon, C. P., Jaiswal, D., McGrath, J. M., & Long, S. P. (2017). Loss of photosynthetic efficiency in the shade. An Achilles heel for the dense modern stands of our most productive C4 crops? Journal of Experimental Botany, 68(2), 335-345. DOI: 10.1093/jxb/erw456

Wang, M., Wagner, M., Miguez-Macho, G., Kamarianakis, Y., Mahalov, A., Moustaoui, M., ... Georgescu, M. (2017). On the long-term hydroclimatic sustainability of perennial bioenergy crop expansion over the United States. Journal of Climate, 30(7), 2535-2557. DOI: 10.1175/JCLI-D-16-0610.1

Niinemets, Ü., Berry, J. A., von Caemmerer, S., Ort, D. R., Parry, M. A. J., & Poorter, H. (2017). Photosynthesis: ancient, essential, complex, diverse … and in need of improvement in a changing world. New Phytologist, 213(1), 43-47. DOI: 10.1111/nph.14307

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R., & Long, S. P. (2017). Rooting for cassava: insights into photosynthesis and associated physiology as a�route to improve yield potential. New Phytologist, 213(1), 50-65. DOI: 10.1111/nph.14250

Randrianandrasana, M., Wu, W. Y., Carney, D. A., Johnson, A. J. W., & Berenbaum, M. R. (2017). Structural and mechanical properties of cocoons of Antherina suraka (Saturniidae, Lepidoptera), an endemic species used for silk production in Madagascar. Journal of Insect Science, 17(1). DOI: 10.1093/jisesa/iew112

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., ... Baxter, I. (2017). Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria. PLoS Genetics, 13(6), [e1006841]. DOI: 10.1371/journal.pgen.1006841

Somavat, P., Huang, H., Kumar, S., Garg, M. K., Danao, M. C., Singh, V., ... Rausch, K. D. (2017). Comparison of hermetic storage of wheat with traditional storage methods in India. Applied Engineering in Agriculture, 33(1), 121-130. DOI: 10.13031/aea.11792

Köhler, I. H., Ruiz-Vera, U. M., VanLoocke, A., Thomey, M. L., Clemente, T., Long, S. P., ... Bernacchi, C. J. (2017). Expression of cyanobacterial FBP/SBPase in soybean prevents yield depression under future climate conditions. Journal of Experimental Botany, 68(3), 715-726. DOI: 10.1093/jxb/erw435

Moffett, A. S., Bender, K. W., Huber, S. C., & Shukla, D. (2017). Molecular dynamics simulations reveal the conformational dynamics of Arabidopsis thaliana BRI1 and BAK1 receptor-like kinases. Journal of Biological Chemistry, 292(30), 12643-12652. DOI: 10.1074/jbc.M117.792762

Maske, H., Chowdhary, G., & Pagilla, P. (2016). Intent aware shared control in off-nominal situations. In 2016 IEEE 55th Conference on Decision and Control, CDC 2016 (pp. 5171-5176). [7799060] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/CDC.2016.7799060

Kim, S. M., Li, S., Pan, S. C., Ding, Y., Basu, R., van Egmond, P., & Singh, V. (2016). A whole stillage sieving process to recover fiber for cellulosic ethanol production. Industrial Crops and Products, 92, 271-276. DOI: 10.1016/j.indcrop.2016.08.012

Yang, C. J., Kursel, L. E., Studer, A. J., Bartlett, M. E., Whipple, C. J., & Doebley, J. F. (2016). A gene for genetic background in Zea mays: Fine-mapping enhancer of teosinte branched1.2 to a yabby class transcription factor. Genetics, 204(4), 1573-1585. DOI: 10.1534/genetics.116.194928

VanBuren, R., Wai, C. M., Zhang, J., Han, J., Arro, J., Lin, Z., ... Ming, R. (2016). Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep. Genome Biology, 17(1), [230]. DOI: 10.1186/s13059-016-1095-9

Kromdijk, J., Głowacka, K., Leonelli, L., Gabilly, S. T., Iwai, M., Niyogi, K. K., & Long, S. P. (2016). Improving photosynthesis and crop productivity by accelerating recovery from photoprotection. Science, 354(6314), 857-861. DOI: 10.1126/science.aai8878

Larsen, S., Jaiswal, D., Bentsen, N. S., Wang, D., & Long, S. P. (2016). Comparing predicted yield and yield stability of willow and Miscanthus across Denmark. GCB Bioenergy, 8(6), 1061-1070. DOI: 10.1111/gcbb.12318

Ming, R., Wai, C. M., & Guyot, R. (2016). Pineapple Genome: A Reference for Monocots and CAM Photosynthesis. Trends in Genetics, 32(11), 690-696. DOI: 10.1016/j.tig.2016.08.008

Studer, A. J., Schnable, J. C., Weissmann, S., Kolbe, A. R., McKain, M. R., Shao, Y., ... Brutnell, T. P. (2016). The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes. Genome Biology, 17(1), [223]. DOI: 10.1186/s13059-016-1080-3

Kumar, D., & Singh, V. (2016). Dry-grind processing using amylase corn and superior yeast to reduce the exogenous enzyme requirements in bioethanol production. Biotechnology for Biofuels, 9(1), [648]. DOI: 10.1186/s13068-016-0648-1

Ainsworth, E. A., Bernacchi, C. J., & Dohleman, F. G. (2016). Focus on ecophysiology. Plant Physiology, 172(2), 619-621. DOI: 10.1104/pp.16.01408

Berenbaum, M. R. (2016). Speaking of insects⋯. Science, 353(6306), 1343. DOI: 10.1126/science.aaj2166

Gray, S. B., Dermody, O., Klein, S. P., Locke, A. M., McGrath, J. M., Paul, R. E., ... Leakey, A. D. B. (2016). Intensifying drought eliminates the expected benefits of elevated carbon dioxide for soybean. Nature Plants, 2, [16132]. DOI: 10.1038/nplants.2016.132

Wai, C. M., Powell, B., Ming, R., & Min, X. J. (2016). Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus). Tropical Plant Biology, 9(3), 150-160. DOI: 10.1007/s12042-016-9168-1

Paull, R. E., Chen, N. J., Ming, R., Wai, C. M., Shirley, N., Schwerdt, J., & Bulone, V. (2016). Carbon Flux and Carbohydrate Gene Families in Pineapple. Tropical Plant Biology, 9(3), 200-213. DOI: 10.1007/s12042-016-9176-1

Singh, R., Ming, R., & Yu, Q. (2016). Comparative Analysis of GC Content Variations in Plant Genomes. Tropical Plant Biology, 9(3), 136-149. DOI: 10.1007/s12042-016-9165-4

Somavat, P., Li, Q., de Mejia, E. G., Liu, W., & Singh, V. (2016). Coproduct yield comparisons of purple, blue and yellow dent corn for various milling processes. Industrial Crops and Products, 87, 266-272. DOI: 10.1016/j.indcrop.2016.04.062

Sakoda, K., Tanaka, Y., Long, S. P., & Shiraiwa, T. (2016). Genetic and physiological diversity in the leaf photosynthetic capacity of soybean. Crop Science, 56(5), 2731-2741. DOI: 10.2135/cropsci2016.02.0122

Fang, J., Miao, C., Chen, R., & Ming, R. (2016). Genome-Wide Comparative Analysis of Microsatellites in Pineapple. Tropical Plant Biology, 9(3), 117-135. DOI: 10.1007/s12042-016-9163-6

Wai, C. M., Powell, B., Ming, R., & Min, X. J. (2016). Genome-Wide Identification and Analysis of Genes Encoding Proteolytic Enzymes in Pineapple. Tropical Plant Biology, 9(3), 161-175. DOI: 10.1007/s12042-016-9172-5

Zhang, X., Liang, P., & Ming, R. (2016). Genome-Wide Identification and Characterization of Nucleotide-Binding Site (NBS) Resistance Genes in Pineapple. Tropical Plant Biology, 9(3), 187-199. DOI: 10.1007/s12042-016-9178-z

Zheng, Y., Li, T., Xu, Z., Wai, C. M., Chen, K., Zhang, X., ... Sunkar, R. (2016). Identification of microRNAs, phasiRNAs and Their Targets in Pineapple. Tropical Plant Biology, 9(3), 176-186. DOI: 10.1007/s12042-016-9173-4

Kim, S. M., Dien, B. S., Tumbleson, M. E., Rausch, K. D., & Singh, V. (2016). Improvement of sugar yields from corn stover using sequential hot water pretreatment and disk milling. Bioresource Technology, 216, 706-713. DOI: 10.1016/j.biortech.2016.06.003

Ghandchi, F. P., Caetano-Anolles, G., Clough, S. J., & Ort, D. R. (2016). Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 11(9), [e0162327]. DOI: 10.1371/journal.pone.0162327

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., ... Bernacchi, C. J. (2016). The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA. Plant Cell and Environment, 39(9), 1928-1940. DOI: 10.1111/pce.12751

Oikawa, S., & Ainsworth, E. A. (2016). Changes in leaf area, nitrogen content and canopy photosynthesis in soybean exposed to an ozone concentration gradient. Environmental Pollution, 215, 347-355. DOI: 10.1016/j.envpol.2016.05.005

Slattery, R. A., Grennan, A. K., Sivaguru, M., Sozzani, R., & Ort, D. R. (2016). Light sheet microscopy reveals more gradual light attenuation in light-green versus dark-green soybean leaves. Journal of Experimental Botany, 67(15), 4697-4709. DOI: 10.1093/jxb/erw246

Chang, H. X., Yendrek, C. R., Caetano-Anolles, G., & Hartman, G. L. (2016). Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanses and polygalacturonases of Fusarium virguliforme. BMC Microbiology, 16(1), [147]. DOI: 10.1186/s12866-016-0761-0

Miller, J. N., VanLoocke, A., Gomez-Casanovas, N., & Bernacchi, C. J. (2016). Candidate perennial bioenergy grasses have a higher albedo than annual row crops. GCB Bioenergy, 8(4), 818-825. DOI: 10.1111/gcbb.12291

Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E., & Singh, V. (2016). Maize proximate composition and physical properties correlations to dry-grind ethanol concentrations. Cereal Chemistry, 93(4), 414-418. DOI: 10.1094/CCHEM-09-15-0187-R

Walker, B. J., South, P. F., & Ort, D. R. (2016). Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration. Photosynthesis Research, 129(1), 93-103. DOI: 10.1007/s11120-016-0277-3

Hufkens, K., Keenan, T. F., Flanagan, L. B., Scott, R. L., Bernacchi, C. J., Joo, E., ... Richardson, A. D. (2016). Productivity of North American grasslands is increased under future climate scenarios despite rising aridity. Nature Climate Change, 6(7), 710-714. DOI: 10.1038/nclimate2942

Wang, Z., Huang, H., De Mejia, E. G., Li, Q., & Singh, V. (2016). Use of pigmented maize in both conventional dry-grind and modified processes using granular starch hydrolyzing enzyme. Cereal Chemistry, 93(4), 344-351. DOI: 10.1094/CCHEM-07-15-0140-R

Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R., & Ming, R. (2016). Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya. Frontiers in Plant Science, 7(JUNE2016), [855]. DOI: 10.3389/fpls.2016.00855

Grande, R. C., Walsh, T. J., Chowdhary, G., Ferguson, S., & How, J. P. (2016). Online Regression for Data With Changepoints Using Gaussian Processes and Reusable Models. IEEE Transactions on Neural Networks and Learning Systems. DOI: 10.1109/TNNLS.2016.2574565

Zhang, J., Sharma, A., Yu, Q., Wang, J., Li, L., Zhu, L., ... Ming, R. (2016). Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum. BMC Genomics, 17(1), [446]. DOI: 10.1186/s12864-016-2817-9

Walker, B. J., Skabelund, D. C., Busch, F. A., & Ort, D. R. (2016). An improved approach for measuring the impact of multiple CO2 conductances on the apparent photorespiratory CO2 compensation point through slope-intercept regression. Plant Cell and Environment, 39(6), 1198-1203. DOI: 10.1111/pce.12722

Harrison, T., Dean, C. A. E., Parks, K., & Berenbaum, M. R. (2016). Depressaria depressana (fabricius) (depressariidae), new to the Midwestern USA. Journal of the Lepidopterists' Society, 70(2), 169-173. DOI: 10.18473/lepi.70i2.a15

Flores-Moreno, H., Reich, P. B., Lind, E. M., Sullivan, L. L., Seabloom, E. W., Yahdjian, L., ... Borer, E. T. (2016). Climate modifies response of non-native and native species richness to nutrient enrichment. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1694), [20150273]. DOI: 10.1098/rstb.2015.0273

Tal, G., Boca, S. M., Mittenthal, J., & Caetano-Anollés, G. (2016). A Dynamic Model for the Evolution of Protein Structure. Journal of Molecular Evolution, 82(4-5), 230-243. DOI: 10.1007/s00239-016-9740-1

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., ... Ming, R. (2016). Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.). Euphytica, 209(2), 477-493. DOI: 10.1007/s10681-016-1672-8

Koester, R. P., Nohl, B. M., Diers, B. W., & Ainsworth, E. A. (2016). Has photosynthetic capacity increased with 80years of soybean breeding? An examination of historical soybean cultivars. Plant Cell and Environment, 39(5), 1058-1067. DOI: 10.1111/pce.12675

Betti, M., Bauwe, H., Busch, F. A., Fernie, A. R., Keech, O., Levey, M., ... Weber, A. P. M. (2016). Manipulating photorespiration to increase plant productivity: Recent advances and perspectives for crop improvement. Journal of experimental botany, 67(10), 2977-2988. DOI: 10.1093/jxb/erw076

Fang, J., Wood, A., Chen, R., & Ming, R. (2016). Molecular basis of off-type microsatellite markers in papaya. Euphytica, 209(2), 323-339. DOI: 10.1007/s10681-015-1630-x

Zhu, X. G., Lynch, J. P., Lebauer, D. S., Millar, A. J., Stitt, M., & Long, S. P. (2016). Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research. Plant Cell and Environment, 39(5), 1049-1057. DOI: 10.1111/pce.12673

Huang, H., Long, S., & Singh, V. (2016). Techno-economic analysis of biodiesel and ethanol co-production from lipid-producing sugarcane. Biofuels, Bioproducts and Biorefining, 10(3), 299-315. DOI: 10.1002/bbb.1640

Kim, S. M., Dien, B. S., & Singh, V. (2016). Promise of combined hydrothermal/chemical and mechanical refining for pretreatment of woody and herbaceous biomass. Biotechnology for Biofuels, 9(1), [97]. DOI: 10.1186/s13068-016-0505-2

Walker, B. J., Vanloocke, A., Bernacchi, C. J., & Ort, D. R. (2016). The Costs of Photorespiration to Food Production Now and in the Future. Annual Review of Plant Biology, 67, 107-129. DOI: 10.1146/annurev-arplant-043015-111709

Aziz, M. F., Caetano-Anollés, K., & Caetano-Anollés, G. (2016). The early history and emergence of molecular functions and modular scale-free network behavior. Scientific Reports, 6, [25058]. DOI: 10.1038/srep25058

Chen, M. H., Bowman, M. J., Cotta, M. A., Dien, B. S., Iten, L. B., Whitehead, T. R., ... Singh, V. (2016). Miscanthus × giganteus xylooligosaccharides: Purification and fermentation. Carbohydrate Polymers, 140, 96-103. DOI: 10.1016/j.carbpol.2015.12.052

Głowacka, K., Kromdijk, J., Leonelli, L., Niyogi, K. K., Clemente, T. E., & Long, S. P. (2016). An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants. Plant Cell and Environment, 39(4), 908-917. DOI: 10.1111/pce.12693

Gomez-Casanovas, N., Hudiburg, T. W., Bernacchi, C. J., Parton, W. J., & Delucia, E. H. (2016). Nitrogen deposition and greenhouse gas emissions from grasslands: Uncertainties and future directions. Global Change Biology, 22(4), 1348-1360. DOI: 10.1111/gcb.13187

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R., & Huber, S. C. (2016). The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state. Frontiers in Plant Science, 7(MAR2016), [404]. DOI: 10.3389/fpls.2016.00404

Kromdijk, J., & Long, S. P. (2016). One crop breeding cycle from starvation? How engineering crop photosynthesis for rising CO2 and temperature could be one important route to alleviation. Proceedings of the Royal Society B: Biological Sciences, 283(1826), [20152578]. DOI: 10.1098/rspb.2015.2578

Glowacka, K., Ahmed, A., Sharma, S., Abbott, T., Comstock, J. C., Long, S. P., & Sacks, E. J. (2016). Can chilling tolerance of C4 photosynthesis in Miscanthus be transferred to sugarcane? GCB Bioenergy, 8(2), 407-418. DOI: 10.1111/gcbb.12283

Soleh, M. A., Tanaka, Y., Nomoto, Y., Iwahashi, Y., Nakashima, K., Fukuda, Y., ... Shiraiwa, T. (2016). Factors underlying genotypic differences in the induction of photosynthesis in soybean [Glycine max (L.) Merr.]. Plant Cell and Environment, 39(3), 685-693. DOI: 10.1111/pce.12674

Chamberlain, S. D., Gomez-Casanovas, N., Walter, M. T., Boughton, E. H., Bernacchi, C. J., Delucia, E. H., ... Sparks, J. P. (2016). Influence of transient flooding on methane fluxes from subtropical pastures. Journal of Geophysical Research G: Biogeosciences, 121(3), 965-977. DOI: 10.1002/2015JG003283

Webster, R. J., Driever, S. M., Kromdijk, J., McGrath, J., Leakey, A. D. B., Siebke, K., ... Long, S. P. (2016). High C3 photosynthetic capacity and high intrinsic water use efficiency underlies the high productivity of the bioenergy grass Arundo donax. Scientific Reports, 6, [20694]. DOI: 10.1038/srep20694

Govindjee, Prince, R. C., & Ort, D. R. (2016). Colin A. Wraight, 1945-2014. Photosynthesis research, 127(2), 237-256. DOI: 10.1007/s11120-015-0174-1

Sabath, N., Goldberg, E. E., Glick, L., Einhorn, M., Ashman, T. L., Ming, R., ... Mayrose, I. (2016). Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms. New Phytologist, 209(3), 1290-1300. DOI: 10.1111/nph.13696

Ampt, E. A., Bush, D. S., Siegel, J. P., & Berenbaum, M. R. (2016). Larval preference and performance of amyelois transitella (navel orangeworm, lepidoptera: Pyralidae) in relation to the fungus aspergillus flavus. Environmental Entomology, 45(1), 155-162. DOI: 10.1093/ee/nvv160

Zhang, Q., Hu, W., Zhu, F., Wang, L., Yu, Q., Ming, R., & Zhang, J. (2016). Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum. BMC Genomics, 17(1), [88]. DOI: 10.1186/s12864-016-2419-6

Masters, M. D., Black, C. K., Kantola, I. B., Woli, K. P., Voigt, T., David, M. B., & DeLucia, E. H. (2016). Soil nutrient removal by four potential bioenergy crops: Zea mays, Panicum virgatum, Miscanthus×giganteus, and prairie. Agriculture, Ecosystems and Environment, 216, 51-60. DOI: 10.1016/j.agee.2015.09.016

Berenbaum, M. R. (2016). Does the Honey Bee "risk Cup" Runneth Over? Estimating Aggregate Exposures for Assessing Pesticide Risks to Honey Bees in Agroecosystems. Journal of Agricultural and Food Chemistry, 64(1), 13-20. DOI: 10.1021/acs.jafc.5b01067

Chen, M. H., Swanson, K. S., Fahey, G. C., Dien, B. S., Beloshapka, A. N., Bauer, L. L., ... Singh, V. (2016). In Vitro Fermentation of Xylooligosaccharides Produced from Miscanthus × giganteus by Human Fecal Microbiota. Journal of Agricultural and Food Chemistry, 64(1), 262-267. DOI: 10.1021/acs.jafc.5b04618

Hudiburg, T. W., Wang, W., Khanna, M., Long, S. P., Dwivedi, P., Parton, W. J., ... Delucia, E. H. (2016). Impacts of a 32-billion-gallon bioenergy landscape on land and fossil fuel use in the US. Nature Energy, 1(1), [15005]. DOI: 10.1038/nenergy.2015.5

Miller, A. D., Dietze, M. C., Delucia, E. H., & Anderson-Teixeira, K. J. (2016). Alteration of forest succession and carbon cycling under elevated CO2. Global Change Biology, 22(1), 351-363. DOI: 10.1111/gcb.13077

Nasir, A., Kim, K. M., Da Cunha, V., & Caetano-Anollés, G. (2016). Arguments Reinforcing the Three-Domain View of Diversified Cellular Life. Archaea, 2016, [1851865]. DOI: 10.1155/2016/1851865

Melikoglu, M., Singh, V., Leu, S. Y., Webb, C., & Lin, C. S. K. (2016). Biochemical production of bioalcohols. In Handbook of Biofuels Production: Processes and Technologies: Second Edition (pp. 237-258). Elsevier Inc.. DOI: 10.1016/B978-0-08-100455-5.00009-6

Lin, T., Rodríguez, L. F., Davis, S., Khanna, M., Shastri, Y., Grift, T., ... Ting, K. C. (2016). Biomass feedstock preprocessing and long-distance transportation logistics. GCB Bioenergy, 8(1), 160-170. DOI: 10.1111/gcbb.12241

Huber, S. C., Li, K., Nelson, R., Ulanov, A., DeMuro, C. M., & Baxter, I. (2016). Canopy position has a profound effect on soybean seed composition. PeerJ, 2016(9), [e2452]. DOI: 10.7717/peerj.2452

Kressman, R., & Long, S. (2016). GCB-Bioenergy reaches a new high in impact factor and goes open access. GCB Bioenergy, 8(1). DOI: 10.1111/gcbb.12325

Caetano-Anoll�s, D., & Caetano-Anoll�s, G. (2016). The phylogenomic roots of translation. In Evolution of the Protein Synthesis Machinery and Its Regulation (pp. 9-30). Springer International Publishing. DOI: 10.1007/978-3-319-39468-8_2

Caetano-Anollés, G. (2016). Creationism and intelligent design are incompatible with scientific progress: A response to Shanta and Vêdanta. Communicative and Integrative Biology, 9(1). DOI: 10.1080/19420889.2015.1123356

Bagchi, V. A., Siegel, J. P., Demkovich, M. R., Zehr, L. N., & Berenbaum, M. R. (2016). Impact of Pesticide Resistance on Toxicity and Tolerance of Hostplant Phytochemicals in Amyelois Transitella (Lepidoptera: Pyralidae). Journal of insect science (Online), 16(1). DOI: 10.1093/jisesa/iew063

Randrianandrasana, M., Berlocher, S. H., Rougerie, R., & Berenbaum, M. R. (2016). Intraspecific Variation in Antherina suraka (Lepidoptera: Saturniidae), an Endemic Resident of Endangered Forests in Madagascar. Annals of the Entomological Society of America, 109(3), 384-395. DOI: 10.1093/aesa/saw006

Kingravi, H. A., Maske, H., & Chowdhary, G. (2016). Kernel observers: Systems-theoretic modeling and inference of spatiotemporally evolving processes. Advances in Neural Information Processing Systems, 3997-4005.

Gustafson, D., Hayes, M., Janssen, E., Lobell, D. B., Long, S., Nelson, G. C., ... Wuebbles, D. (2015). Pharaoh's Dream Revisited: An Integrated US Midwest Field Research Network for Climate Adaptation. BioScience, 66(1), 80-85. DOI: 10.1093/biosci/biv164

Yendrek, C. R., Koester, R. P., & Ainsworth, E. A. (2015). A comparative analysis of transcriptomic, biochemical, and physiological responses to elevated ozone identifies species-specific mechanisms of resilience in legume crops. Journal of Experimental Botany, 66(22), 7101-7112. DOI: 10.1093/jxb/erv404

Duval, B. D., Hartman, M., Marx, E., Parton, W. J., Long, S. P., & DeLucia, E. H. (2015). Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States. Ecosphere, 6(12), [265]. DOI: 10.1890/ES15-00546.1

Huang, H., Singh, V., & Qureshi, N. (2015). Butanol production from food waste: a novel process for producing sustainable energy and reducing environmental pollution. Biotechnology for Biofuels, 8(1), [332]. DOI: 10.1186/s13068-015-0332-x

Demkovich, M., Dana, C. E., Siegel, J. P., & Berenbaum, M. R. (2015). Effect of Piperonyl Butoxide on the Toxicity of Four Classes of Insecticides to Navel Orangeworm (Amyelois transitella) (Lepidoptera: Pyralidae). Journal of Economic Entomology, 108(6), 2753-2760. DOI: 10.1093/jee/tov237

Arundale, R. A., Bauer, S., Haffner, F. B., Mitchell, V. D., Voigt, T. B., & Long, S. P. (2015). Environment Has Little Effect on Biomass Biochemical Composition of Miscanthus × giganteus Across Soil Types, Nitrogen Fertilization, and Times of Harvest. Bioenergy Research, 8(4), 1636-1646. DOI: 10.1007/s12155-015-9613-2

Sanz-sáez, Á., Heath, K. D., Burke, P. V., & Ainsworth, E. A. (2015). Inoculation with an enhanced N2-fixing Bradyrhizobium japonicum strain (USDA110) does not alter soybean (Glycine max Merr.) response to elevated [CO2]. Plant Cell and Environment, 38(12), 2589-2602. DOI: 10.1111/pce.12577

Ming, R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., ... Heath, K. (2015). The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics, 47(12), 1435-1442. DOI: 10.1038/ng.3435

McGrath, J. M., Betzelberger, A. M., Wang, S., Shook, E., Zhu, X. G., Long, S. P., & Ainsworth, E. A. (2015). An analysis of ozone damage to historical maize and soybean yields in the United States. Proceedings of the National Academy of Sciences of the United States of America, 112(46), 14390-14395. DOI: 10.1073/pnas.1509777112

De Mejia, E. G., Dia, V. P., West, L., West, M., Singh, V., Wang, Z., & Allen, C. (2015). Temperature Dependency of Shelf and Thermal Stabilities of Anthocyanins from Corn Distillers' Dried Grains with Solubles in Different Ethanol Extracts and a Commercially Available Beverage. Journal of Agricultural and Food Chemistry, 63(45), 10032-10041. DOI: 10.1021/acs.jafc.5b03888

Walker, B. J., & Ort, D. R. (2015). Improved method for measuring the apparent CO2 photocompensation point resolves the impact of multiple internal conductances to CO2 to net gas exchange. Plant Cell and Environment, 38(11), 2462-2474. DOI: 10.1111/pce.12562

Jogesh, T., Peery, R., Downie, S. R., & Berenbaum, M. R. (2015). Patterns of Genetic Diversity in the Globally Invasive Species Wild Parsnip (Pastinaca sativa). Invasive Plant Science and Management, 8(4), 415-429. DOI: 10.1614/IPSM-D-15-00024.1

Mao, W., Schuler, M. A., & Berenbaum, M. R. (2015). Task-related differential expression of four cytochrome P450 genes in honeybee appendages. Insect Molecular Biology, 24(5), 582-588. DOI: 10.1111/imb.12183

Anderson, J. L., Hockfield, S., Beall, C. M., Berenbaum, M. R., Miranda, M. L., Stuss, D. T., ... Raven, P. H. (2015). AAAS annual election: Preliminary announcement. Science, 349(6255).

Way, D. A., & Long, S. P. (2015). Climate-smart agriculture and forestry: Maintaining plant productivity in a changing world while minimizing production system effects on climate. Plant, Cell and Environment, 38(9), 1683-1685. DOI: 10.1111/pce.12592

Bishop, K. A., Betzelberger, A. M., Long, S. P., & Ainsworth, E. A. (2015). Is there potential to adapt soybean (Glycine max Merr.) to future [CO2]? An analysis of the yield response of 18 genotypes in free-air CO2 enrichment. Plant, Cell and Environment, 38(9), 1765-1774. DOI: 10.1111/pce.12443

Shahzad, K., Mittenthal, J. E., & Caetano-Anollés, G. (2015). The organization of domains in proteins obeys Menzerath-Altmann's law of language. BMC Systems Biology, 9(1), [44]. DOI: 10.1186/s12918-015-0192-9

Mao, W., Schuler, M. A., & Berenbaum, M. R. (2015). A dietary phytochemical alters caste-associated gene expression in honey bees. Science Advances, 1(7), [e1500795]. DOI: 10.1126/sciadv.1500795

Locke, A. M., & Ort, D. R. (2015). Diurnal depression in leaf hydraulic conductance at ambient and elevated [CO2] reveals anisohydric water management in field-grown soybean and possible involvement of aquaporins. Environmental and Experimental Botany, 116, 39-46. DOI: 10.1016/j.envexpbot.2015.03.006

Varala, K., Li, Y., Marshall-Colón, A., Para, A., & Coruzzi, G. M. (2015). Hit-and-Run leaves its mark: Catalyst transcription factors and chromatin modification. BioEssays, 37(8), 851-856. DOI: 10.1002/bies.201400205

Oh, M. H., Bender, K. W., Kim, S. Y., Wu, X., Lee, S., Nou, I. S., ... Huber, S. C. (2015). Functional analysis of the BRI1 receptor kinase by Thr-for-Ser substitution in a regulatory autophosphorylation site. Frontiers in Plant Science, 6(JULY), [562]. DOI: 10.3389/fpls.2015.00562

Dietterich, L. H., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A. D. B., Bloom, A. J., ... Myers, S. S. (2015). Impacts of elevated atmospheric CO2 on nutrient content of important food crops. Scientific Data, 2, [150036]. DOI: 10.1038/sdata.2015.36

Ort, D. R., Merchant, S. S., Alric, J., Barkan, A., Blankenship, R. E., Bock, R., ... Zhu, X. G. (2015). Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proceedings of the National Academy of Sciences of the United States of America, 112(28), 8529-8536. DOI: 10.1073/pnas.1424031112

Edger, P. P., Heidel-Fischer, H. M., Bekaert, M., Rota, J., Glöckner, G., Platts, A. E., ... Berenbaum, M. R. (2015). The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America, 112(27), 8362-8366. DOI: 10.1073/pnas.1503926112

Li, Q., Li, Y., Moose, S. P., & Hudson, M. E. (2015). Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants. BMC Plant Biology, 15(1), [168]. DOI: 10.1186/s12870-015-0549-7

Randrianandrasana, M., & Berenbaum, M. R. (2015). Edible Non-crustacean Arthropods in Rural Communities of Madagascar. Journal of Ethnobiology, 35(2), 354-383. DOI: 10.2993/etbi-35-02-354-383.1

Wang, H., Studer, A. J., Zhao, Q., Meeley, R., & Doebley, J. F. (2015). Evidence that the origin of naked kernels during maize domestication was caused by a single amino acid substitution in tga1. Genetics, 200(3), 965-974. DOI: 10.1534/genetics.115.175752

Gifford, J. M., Chae, W. B., Swaminathan, K., Moose, S. P., & Juvik, J. A. (2015). Mapping the genome of Miscanthus sinensis for QTL associated with biomass productivity. GCB Bioenergy, 7(4), 797-810. DOI: 10.1111/gcbb.12201

Demkovich, M., Siegel, J. P., Higbee, B. S., & Berenbaum, M. R. (2015). Mechanism of resistance acquisition and potential associated fitness costs in Amyelois transitella (Lepidoptera: Pyralidae) exposed to pyrethroid insecticides. Environmental Entomology, 44(3), 855-863. DOI: 10.1093/ee/nvv047

Berenbaum, M. R., & Johnson, R. M. (2015). Xenobiotic detoxification pathways in honey bees. Current Opinion in Insect Science, 10, 51-58. DOI: 10.1016/j.cois.2015.03.005

Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K., & Singh, V. (2015). Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield. Bioresource Technology, 183, 70-77. DOI: 10.1016/j.biortech.2015.02.020

Bender, K. W., Wang, X., Cheng, G. B., Kim, H. S., Zielinski, R. E., & Huber, S. C. (2015). Glutaredoxin AtGRXC2 catalyses inhibitory glutathionylation of arabidopsis BRI1-associated receptor-like kinase 1 (BAK1) in vitro. Biochemical Journal, 467(3), 399-413. DOI: 10.1042/BJ20141403

Ramchandran, D., Johnston, D. B., Tumbleson, M. E., Rausch, K. D., & Singh, V. (2015). Seasonal variability in ethanol concentrations from a dry grind fermentation operation associated with incoming corn variability. Industrial Crops and Products, 67, 155-160. DOI: 10.1016/j.indcrop.2015.01.029

Huang, H., Long, S., & Singh, V. (2015). Ultra oil-producing. International News on Fats, Oils and Related Materials, 26(5), 278-282.

Caetano-Anollés, G. (2015). Ancestral Insertions and Expansions of rRNA do not Support an Origin of the Ribosome in Its Peptidyl Transferase Center. Journal of Molecular Evolution, 80(3-4), 162-165. DOI: 10.1007/s00239-015-9677-9

Dia, V. P., Wang, Z., West, M., Singh, V., West, L., & De Mejia, E. G. (2015). Processing method and corn cultivar affected anthocyanin concentration from dried distillers grains with solubles. Journal of Agricultural and Food Chemistry, 63(12), 3205-3218. DOI: 10.1021/acs.jafc.5b00128

Long, S. P., Marshall-Colon, A., & Zhu, X. G. (2015). Meeting the global food demand of the future by engineering crop photosynthesis and yield potential. Cell, 161(1), 56-66. [8102]. DOI: 10.1016/j.cell.2015.03.019

Huang, H., Qureshi, N., Chen, M. H., Liu, W., & Singh, V. (2015). Ethanol production from food waste at high solids content with vacuum recovery technology. Journal of Agricultural and Food Chemistry, 63(10), 2760-2766. DOI: 10.1021/jf5054029

Hudiburg, T. W., Davis, S. C., Parton, W., & Delucia, E. H. (2015). Bioenergy crop greenhouse gas mitigation potential under a range of management practices. GCB Bioenergy, 7(2), 366-374. DOI: 10.1111/gcbb.12152

Plumier, B. M., Danao, M. G. C., Rausch, K. D., & Singh, V. (2015). Changes in unreacted starch content in corn during storage. Journal of Stored Products Research, 61, 85-89. DOI: 10.1016/j.jspr.2014.11.006

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., ... Krouk, G. (2015). AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip. Nature Communications, 6, [6274]. DOI: 10.1038/ncomms7274

Ming, R., & Man Wai, C. (2015). Assembling allopolyploid genomes: No longer formidable. Genome Biology, 16(1), [27]. DOI: 10.1186/s13059-015-0585-5

Mitra, S. K., Chen, R., Dhandaydham, M., Wang, X., Blackburn, R. K., Kota, U., ... Clouse, S. D. (2015). An autophosphorylation site database for leucine-rich repeat receptor-like kinases in Arabidopsis thaliana. Plant Journal, 82(6), 1042-1060. DOI: 10.1111/tpj.12863

Nasir, A., & Caetano-Anollés, G. (2015). A phylogenomic data-driven exploration of viral origins and evolution. Science Advances, 1(8), [1500527]. DOI: 10.1126/sciadv.1500527

Wang, D., Jaiswal, D., LeBauer, D. S., Wertin, T. M., Bollero, G. A., Leakey, A. D. B., & Long, S. P. (2015). A physiological and biophysical model of coppice willow (Salix spp.) production yields for the contiguous USA in current and future climate scenarios. Plant, Cell and Environment, 38(9), 1850-1865. DOI: 10.1111/pce.12556

Yang, X., Cushman, J. C., Borland, A. M., Edwards, E. J., Wullschleger, S. D., Tuskan, G. A., ... Jenkins, J. (2015). A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world. New Phytologist, 207(3), 491-504. DOI: 10.1111/nph.13393

Bagley, J. E., Miller, J., & Bernacchi, C. J. (2015). Biophysical impacts of climate-smart agriculture in the Midwest United States. Plant, Cell and Environment, 38(9), 1913-1930. DOI: 10.1111/pce.12485

Ruiz-Vera, U. M., Siebers, M. H., Drag, D. W., Ort, D. R., & Bernacchi, C. J. (2015). Canopy warming caused photosynthetic acclimation and reduced seed yield in maize grown at ambient and elevated [CO2]. Global Change Biology, 21(11), 4237-4249. DOI: 10.1111/gcb.13013

Głowacka, K., Jørgensen, U., Kjeldsen, J. B., Kørup, K., Spitz, I., Sacks, E. J., & Long, S. P. (2015). Can the exceptional chilling tolerance of C4 photosynthesis found in Miscanthus ;× giganteus be exceeded? Screening of a novel Miscanthus Japanese germplasm collection. Annals of Botany, 115(6), 981-990. DOI: 10.1093/aob/mcv035

Zeng, F., Arnao, E., Zhang, G., Olaya, G., Wullschleger, J., Sierotzki, H., ... Bradley, C. A. (2015). Characterization of quinone outside inhibitor fungicide resistance in Cercospora sojina and development of diagnostic tools for its identification. Plant Disease, 99(4), 544-550. DOI: 10.1094/PDIS-05-14-0460-RE

Caetano-Anollés, G., & Caetano-Anollés, D. (2015). Computing the origin and evolution of the ribosome from its structure - Uncovering processes of macromolecular accretion benefiting synthetic biology. Computational and Structural Biotechnology Journal, 13, 427-447. DOI: 10.1016/j.csbj.2015.07.003

Flowers, S. A., Colón, B., Whaley, S. G., Schuler, M. A., & David Rogers, P. (2015). Contribution of clinically derived mutations in ERG11 to azole resistance in Candida albicans. Antimicrobial Agents and Chemotherapy, 59(1), 450-460. DOI: 10.1128/AAC.03470-14

Dwivedi, P., Wang, W., Hudiburg, T., Jaiswal, D., Parton, W., Long, S., ... Khanna, M. (2015). Cost of abating greenhouse gas emissions with cellulosic ethanol. Environmental Science and Technology, 49(4), 2512-2522. DOI: 10.1021/es5052588

Challa, R., Johnston, D., Singh, V., Tumbleson, M., & Rausch, K. (2015). Fouling characteristics of model carbohydrate mixtures and their interaction effects. Food and Bioproducts Processing, 93, 197-204. DOI: 10.1016/j.fbp.2014.09.008

Toomey, M., Friedl, M. A., Frolking, S., Hufkens, K., Klosterman, S., Sonnentag, O., ... Richardson, A. D. (2015). Greenness indices from digital cameras predict the timing and seasonal dynamics of canopy-scale photosynthesis. Ecological Applications, 25(1), 99-115. DOI: 10.1890/14-0005.1

Siebers, M. H., Yendrek, C. R., Drag, D., Locke, A. M., Rios Acosta, L., Leakey, A. D. B., ... Ort, D. R. (2015). Heat waves imposed during early pod development in soybean (Glycine max) cause significant yield loss despite a rapid recovery from oxidative stress. Global Change Biology, 21(8), 3114-3125. DOI: 10.1111/gcb.12935

Campbell, B. W., Mani, D., Curtin, S. J., Slattery, R. A., Michno, J. M., Ort, D. R., ... Stupar, R. M. (2015). Identical substitutions in nagnesium chelatase paralogs result in chlorophyll-deficient soybean mutants. G3: Genes, Genomes, Genetics, 5(1), 123-131. DOI: 10.1534/g3.114.015255

Ramchandran, D., Wang, P., Dien, B., Liu, W., Cotta, M. A., & Singh, V. (2015). Improvement of dry-fractionation ethanol fermentation by partial germ supplementation. Cereal Chemistry, 92(2), 218-223. DOI: 10.1094/CCHEM-08-14-0177-R

Nasir, A., Kim, K. M., & Caetano-Anollés, G. (2015). Lokiarchaeota: Eukaryote-like missing links from microbial dark matter? Trends in Microbiology, 23(8), 448-450. DOI: 10.1016/j.tim.2015.06.001

VanBuren, R., Zeng, F., Chen, C., Zhang, J., Wai, C. M., Han, J., ... Ming, R. (2015). Origin and domestication of papaya Yh chromosome. Genome Research, 25(4), 524-533. DOI: 10.1101/gr.183905.114

Schuler, M. A. (2015). P450s in plants, insects, and their fungal pathogens. In Cytochrome P450: Structure, Mechanism, and Biochemistry, Fourth Edition (pp. 409-449). Springer International Publishing. DOI: 10.1007/978-3-319-12108-6_7

Wang, X., Ort, D. R., & Yuan, J. S. (2015). Photosynthetic terpene hydrocarbon production for fuels and chemicals. Plant Biotechnology Journal, 13(2), 137-146. DOI: 10.1111/pbi.12343

Li, J., Danao, M. G. C., Chen, S. F., Li, S., Singh, V., & Brown, P. J. (2015). Prediction of starch content and ethanol yields of sorghum grain using near infrared spectroscopy. Journal of Near Infrared Spectroscopy, 23(2), 85-92. DOI: 10.1255/jnirs.1146

Chen, M. H., Rajan, K., Carrier, D. J., & Singh, V. (2015). Separation of xylose oligomers from autohydrolyzed Miscanthus × giganteus using centrifugal partition chromatography. Food and Bioproducts Processing, 95, 125-132. DOI: 10.1016/j.fbp.2015.04.006

Davis, S. C., & Long, S. P. (2015). Sisal/agave. In Industrial Crops: Breeding for Bioenergy and Bioproducts (pp. 335-349). Springer New York. DOI: 10.1007/978-1-4939-1447-0_15

Bernacchi, C. J., & Vanloocke, A. (2015). Terrestrial ecosystems in a changing environment: A dominant role for water. Annual Review of Plant Biology, 66, 599-622. DOI: 10.1146/annurev-arplant-043014-114834

Mercante, V., Duarte, C. M., S�nchez, C. M., Zalguizuri, A., Caetano-Anoll�s, G., & Lepek, V. C. (2015). The absence of protein Y4yS affects negatively the abundance of T3SS Mesorhizobium loti secretin, RhcC2, in bacterial membranes. Frontiers in Plant Science, 6(JAN), 1-12. [12]. DOI: 10.3389/fpls.2015.00012

Davis, S. C., Ming, R., Lebauer, D. S., & Long, S. P. (2015). Toward systems-level analysis of agricultural production from crassulacean acid metabolism (CAM): Scaling from cell to commercial production. New Phytologist, 208(1), 66-72. DOI: 10.1111/nph.13522

Nasir, A., Sun, F. J., Kim, K. M., & Caetano-Anollés, G. (2015). Untangling the origin of viruses and their impact on cellular evolution. Annals of the New York Academy of Sciences, 1341(1), 61-74. DOI: 10.1111/nyas.12735

Tian, J., Johnston, D. B., Engeseth, N. J., Singh, V., Tumbleson, M. E., & Rausch, K. D. (2015). Heat transfer effects of phytic acid concentration and phytase addition on fouling behavior of steepwater. In Separations Division 2015 - Core Programming Area at the 2015 AIChE Annual Meeting (Vol. 1, pp. 69-70). AIChE.

Caetano-Anollés, D., & Caetano-Anollés, G. (2015). Ribosomal accretion, apriorism and the phylogenetic method: A response to Petrov and Williams. Frontiers in Genetics, 6(JUN), [194]. DOI: 10.3389/fgene.2015.00194

Kim, S. M., Khullar, E., Liu, W., Lanahan, M., Lessard, P., Dohle, S., ... Singh, V. (2015). Rice straw with altered carbohydrate content: Feedstock for ethanol production. Transactions of the ASABE, 58(3), 523-528. DOI: 10.13031/trans.58.11021

Bagley, J., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Kumar, P., Ort, D. R., & Bernacchi, C. J. (2015). The influence of photosynthetic acclimation to rising CO2 and warmer temperatures on leaf and canopy photosynthesis models. Global Biogeochemical Cycles, 29(2), 194-206. DOI: 10.1002/2014GB004848

Williams, D. A., Danao, M. G. C., Rausch, K. D., Paulsen, M. R., & Singh, V. (2015). Variability in composition of individual botanical fractions of Miscanthus × giganteus and their blends. Biofuels, 6(1-2), 63-70. DOI: 10.1080/17597269.2015.1050641