Skip to main content

Illinois IGB

Research Areas

Genomic Ecology of Global Change: Publications

Ainsworth, E. A., Lemonnier, P., & Wedow, J. M. (2020). The influence of rising tropospheric carbon dioxide and ozone on plant productivity. Plant Biology, 22(S1), 5-11.

You, J., Johnston, D. B., Dien, B. S., Singh, V., Engeseth, N. J., Tumbleson, M. E., & Rausch, K. D. (2020). Effects of nitrogenous substances on heat transfer fouling using model thin stillage fluids. Food and Bioproducts Processing, 119, 125-132.

Chen, S., Chee-Sanford, J. C., Yang, W. H., Sanford, R. A., Chen, J., Yan, X., & Shan, J. (2019). Effects of triclosan and triclocarban on denitrification and N2O emissions in paddy soil. Science of the Total Environment, 695, [133782].

Zerpa-Catanho, D., Wai, J., Wang, M. L., Yu, LA., Nguyen, J., & Ming, R. (2019). Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya. BMC Plant Biology, 19(1), [545].

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., ... Van Damme, P. (2019). Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites. Genetic Resources and Crop Evolution, 66(8), 1653-1669.

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., ... Heckerman, D. (2019). Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GigaScience, 8(12).

Zhou, P., Fatima, M., Ma, X., Liu, J., & Ming, R. (2019). Auxin regulation involved in gynoecium morphogenesis of papaya flowers. Horticulture Research, 6(1), [119].

Orellana, L. H., Hatt, J. K., Iyer, R., Chourey, K., Hettich, R. L., Spain, J. C., ... Konstantinidis, K. T. (2019). Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer. Scientific reports, 9(1), [17630].

Jeong, H., Arif, B., Caetano-Anolles, G., Kim, K. M., & Nasir, A. (2019). Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation. Scientific reports, 9(1), [5953].

Diene, S. M., Pinault, L., Keshri, V., Armstrong, N., Khelaifia, S., Chabrière, E., ... Raoult, D. (2019). Human metallo-β-lactamase enzymes degrade penicillin. Scientific reports, 9(1), [12173].

Zhang, J., Fengler, K. A., Van Hemert, J. L., Gupta, R., Mongar, N., Sun, J., ... Shen, B. (2019). Identification and characterization of a novel stay-green QTL that increases yield in maize. Plant Biotechnology Journal, 17(12), 2272-2285.

Zhou, D., Shen, Y., Zhou, P., Fatima, M., Lin, J., Yue, J., ... Ming, R. (2019). Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening. Horticulture Research, 6(1), [80].

Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J., & Ort, D. R. (2019). Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]. Global change biology, 25(12), 4352-4368.

Chowdhary, G., Gazzola, M., Krishnan, G., Soman, C., & Lovell, S. (2019). Soft Robotics as an Enabling Technology for Agroforestry Practice and Research. Sustainability, 11(23), [6751].

Bailey-Serres, J., Parker, J. E., Ainsworth, E. A., Oldroyd, G. E. D., & Schroeder, J. I. (2019). Genetic strategies for improving crop yields. Nature, 575(7781), 109-118.

Schwarz, E. M., & Ort, D. R. (2019). Economical synthesis of 14C-labeled aminolevulinic acid for specific in situ labeling of plant tetrapyrroles. Photosynthesis research, 142(2), 241-247.

Heerah, S., Katari, M., Penjor, R., Coruzzi, G., & Marshall-Colon, A. (2019). WRKY1 Mediates Transcriptional Regulation of Light and Nitrogen Signaling Pathways. Plant physiology, 181(3), 1371-1388.

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., ... Sacks, E. J. (2019). Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea. Annals of botany, 124(4), 731-748.

Mughal, F., & Caetano-Anollés, G. (2019). MANET 3.0: Hierarchy and modularity in evolving metabolic networks. PloS one, 14(10), [e0224201].

Wang, G., Lin, J., Shi, Y., Chang, X., Wang, Y., Guo, L., ... Zhang, J. (2019). Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya. BMC genomics, 20(1), [765].

Myers, S. S., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A. D. B., Bloom, A. J., ... Usui, Y. (2019). Author Correction: Increasing CO2 threatens human nutrition (Nature, (2014), 510, 7503, (139-142), 10.1038/nature13179). Nature, 574(7778), E14.

Kang, C., Sun, F., Caetano-Anollés, G., Yan, L., Li, R., & Bai, J. (2019). Genome-Wide Identification and Characterization of the Vacuolar H+-ATPase Subunit H Gene Family in Crop Plants. International Journal of Molecular Sciences, 20(20), [5125].

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., ... Sacks, E. J. (2019). Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential. GCB Bioenergy, 11(10), 1125-1145.

Slattery, R. A., & Ort, D. R. (2019). Carbon assimilation in crops at high temperatures. Plant Cell and Environment, 42(10), 2750-2758.

Brewer, T. E., Aronson, E. L., Arogyaswamy, K., Billings, S. A., Botthoff, J. K., Campbell, A. N., ... Fierer, N. (2019). Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons. mBio, 10(5).

Khanna, M., Gramig, B. M., DeLucia, E. H., Cai, X., & Kumar, P. (2019). Harnessing emerging technologies to reduce Gulf hypoxia. Nature Sustainability, 2(10), 889-891.

Chen, L. Y., VanBuren, R., Paris, M., Zhou, H., Zhang, X., Wai, C. M., ... Ming, R. (2019). The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics, 51(10), 1549-1558.

Choquette, N. E., Ogut, F., Wertin, T. M., Montes, C. M., Sorgini, C. A., Morse, A. M., ... Ainsworth, E. A. (2019). Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution. Global change biology, 25(12), 4327-4338.

Cheng, M. H., Dien, B. S., Lee, D. K., & Singh, V. (2019). Sugar production from bioenergy sorghum by using pilot scale continuous hydrothermal pretreatment combined with disk refining. Bioresource Technology, [121663].

Cheng, M. H., Wang, Z., Dien, B. S., Slininger, P. J. W., & Singh, V. (2019). Economic Analysis of Cellulosic Ethanol Production from Sugarcane Bagasse Using a Sequential Deacetylation, Hot Water and Disk-Refining Pretreatment. Processes, 7(10), [642].

Berenbaum, M. (2019). Domestic Affairs. American Entomologist, 65(3), 154-157.

Berenbaum, M. (2019). Domestic Affairs. American Entomologist, 65(3), 154-157.

Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E. A., ... Bernacchi, C. J. (2019). High-throughput field phenotyping using hyperspectral reflectance and partial least squares regression (PLSR) reveals genetic modifications to photosynthetic capacity. Remote Sensing of Environment, 231, [111176].

Jayaraman, B., Lu, C., Whitman, J., & Chowdhary, G. (2019). Sparse feature map-based Markov models for nonlinear fluid flows. Computers and Fluids, 191, [104252].

Kayacan, E., & Chowdhary, G. (2019). Tracking Error Learning Control for Precise Mobile Robot Path Tracking in Outdoor Environment. Journal of Intelligent and Robotic Systems: Theory and Applications, 95(3-4), 975-986.

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., ... Huber, S. C. (2019). In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site. Proceedings of the National Academy of Sciences of the United States of America, 116(37), 18723-18731.

Fu, P., Xie, Y., Moore, C. E., Myint, S. W., & Bernacchi, C. J. (2019). A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective. Earth's Future, 7(9), 1058-1070.

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K., & Bernacchi, C. (2019). A physical model-based method for retrieving urban land surface temperatures under cloudy conditions. Remote Sensing of Environment, 230, [111191].

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., ... Zhang, J. (2019). Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum. Tropical Plant Biology, 12(3), 174-185.

Ma, P., Yuan, Y., Shen, Q., Jiang, Q., Hua, X., Zhang, Q., ... Zhang, J. (2019). Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum. Tropical Plant Biology, 12(3), 158-173.

Wang, J., Li, Y., Zhu, F., Ming, R. R., & Chen, L. (2019). Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L. Tropical Plant Biology, 12(3), 133-149.

Zhang, W., Lin, J., Dong, F., Ma, Q., Wu, S., Ma, X., ... Ming, R. (2019). Genomic and Allelic Analyses of Laccase Genes in Sugarcane (Saccharum spontaneum L.). Tropical Plant Biology, 12(3), 219-229.

Lin, J., Zhu, M., Cai, M., Zhang, W., Fatima, M., Jia, H., ... Ming, R. (2019). Identification and Expression Analysis of TCP Genes in Saccharum spontaneum L. Tropical Plant Biology, 12(3), 206-218.

Kurambhatti, C., Kumar, D., & Singh, V. (2019). Impact of Fractionation Process on the Technical and Economic Viability of Corn Dry Grind Ethanol Process. Processes, 7(9), [578].

Finley, J., Jaacks, L. M., Peters, C. J., Ort, D. R., Aimone, A. M., Conrad, Z., & Raiten, D. J. (2019). Perspective: Understanding the Intersection of Climate/Environmental Change, Health, Agriculture, and Improved Nutrition - A Case Study: Type 2 Diabetes. Advances in Nutrition, 10(5), 731-738.

Zhu, P., Zhuang, Q., Welp, L., Ciais, P., Heimann, M., Peng, B., ... Keenan, T. F. (2019). Recent warming has resulted in smaller gains in net carbon uptake in northern high latitudes. Journal of Climate, 32(18), 5849-5863.

DeLucia, N. J., Gomez-Casanovas, N., Boughton, E. H., & Bernacchi, C. (2019). The Role of Management on Methane Emissions From Subtropical Wetlands Embedded in Agricultural Ecosystems. Journal of Geophysical Research: Biogeosciences, 124(9), 2694-2708.

Marshall-Colon, A., & Kliebenstein, D. J. (2019). Plant Networks as Traits and Hypotheses: Moving Beyond Description. Trends in Plant Science, 24(9), 840-852.

Krichels, A. H., Sipic, E., & Yang, W. H. (2019). Iron Redox Reactions Can Drive Microtopographic Variation in Upland Soil Carbon Dioxide and Nitrous Oxide Emissions. Soil Systems, 3(3), [60].

Luna-Vital, D. A., Chatham, L., Juvik, J., Singh, V., Somavat, P., & De Mejia, E. G. (2019). Activating Effects of Phenolics from Apache Red Zea mays L. on Free Fatty Acid Receptor 1 and Glucokinase Evaluated with a Dual Culture System with Epithelial, Pancreatic, and Liver Cells. Journal of Agricultural and Food Chemistry, 67(33), 9148-9159.

Berenbaum, M. R. (2019). Impact factor impacts on early-career scientist careers. Proceedings of the National Academy of Sciences of the United States of America, 116(34), 16659-16662.

Zhang, Q., Gonzalez de Mejia, E., Luna-Vital, D., Tao, T., Chandrasekaran, S., Chatham, L., ... Kumar, D. (2019). Relationship of phenolic composition of selected purple maize (Zea mays L.) genotypes with their anti-inflammatory, anti-adipogenic and anti-diabetic potential. Food chemistry, 289, 739-750.

Zhang, X., Zhang, S., Zhao, Q., Ming, R. R., & Tang, H. (2019). Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data. Nature Plants, 5(8), 833-845.

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., ... Sacks, E. J. (2019). Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America. GCB Bioenergy, 11(8), 988-1007.

Cannon, J., Sanford, R. A., Connor, L., Yang, W., & Chee-Sanford, J. (2019). Sequence alignments and validation of PCR primers used to detect phylogenetically diverse nrfA genes associated with dissimilatory nitrate reduction to ammonium (DNRA). Data in Brief, 25, [104016].

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., ... Sacks, E. J. (2019). Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis. GCB Bioenergy, 11(8), 930-955.

Schmidt, J. A., McGrath, J. M., Hanson, M. R., Long, S. P., & Ahner, B. A. (2019). Field-grown tobacco plants maintain robust growth while accumulating large quantities of a bacterial cellulase in chloroplasts. Nature Plants, 5(7), 715-721.

Zhu, F., & Ming, R. (2019). Global identification and expression analysis of pineapple aquaporins revealed their roles in CAM photosynthesis, boron uptake and fruit domestication. Euphytica, 215(7), [132].

Corray, S., Utterback, P., Ramchandran, D., Singh, V., Moose, S. P., & Parsons, C. M. (2019). Nutritional evaluation of 3 types of novel ethanol coproducts. Poultry science, 98(7), 2933-2939.

Kromdijk, J., Głowacka, K., & Long, S. P. (2019). Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation. Photosynthesis research, 141(1), 83-97.

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C., & Müller, C. (2019). Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration. Global change biology, 25(7), 2470-2484.

Li, Y., Guan, K., Schnitkey, G. D., DeLucia, E., & Peng, B. (2019). Excessive rainfall leads to maize yield loss of a comparable magnitude to extreme drought in the United States. Global change biology, 25(7), 2325-2337.

Portier, E., Silver, W. L., & Yang, W. (2019). Invasive perennial forb effects on gross soil nitrogen cycling and nitrous oxide fluxes depend on phenology. Ecology, 100(7), [e02716].

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K., & Long, S. P. (2019). Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus. GCB Bioenergy, 11(7), 883-894.

Njoroge, T. M., & Berenbaum, M. R. (2019). Laboratory Evaluation of Larvicidal and Oviposition Deterrent Properties of Edible Plant Oils for Potential Management of Aedes aegypti (Diptera: Culicidae) in Drinking Water Containers. Journal of medical entomology, 56(4), 1055-1063.

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., ... Ort, D. R. (2019). Are we approaching a water ceiling to maize yields in the United States? Ecosphere, 10(6), [e02773].

Berenbaum, M. (2019). Bot-Flying. American Entomologist, 65(2), 76-78.

Wang, Z., Dien, B. S., Rausch, K. D., Tumbleson, M. E., & Singh, V. (2019). Improving ethanol yields with deacetylated and two-stage pretreated corn stover and sugarcane bagasse by blending commercial xylose-fermenting and wild type Saccharomyces yeast. Bioresource Technology, 282, 103-109.

Fu, P., Meacham-Hensold, K., Guan, K., & Bernacchi, C. J. (2019). Hyperspectral leaf reflectance as proxy for photosynthetic capacities: An ensemble approach based on multiple machine learning algorithms. Frontiers in Plant Science, 10, [730].

Lichiheb, N., Myles, L. T., Personne, E., Heuer, M., Buban, M., Nelson, A. J., ... Bernacchi, C. (2019). Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH 3 model. Agricultural and Forest Meteorology, 269-270, 78-87.

Li, Q., Singh, V., de Mejia, E. G., & Somavat, P. (2019). Effect of sulfur dioxide and lactic acid in steeping water on the extraction of anthocyanins and bioactives from purple corn pericarp. Cereal Chemistry, 96(3), 575-589.

Cheng, M. H., Huang, H., Dien, B. S., & Singh, V. (2019). The costs of sugar production from different feedstocks and processing technologies. Biofuels, Bioproducts and Biorefining, 13(3), 723-739.

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., ... Varshney, R. K. (2019). The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics, 51(5), 865-876.

Satheeshbabu, S., Uppalapati, N. K., Chowdhary, G., & Krishnan, G. (2019). Open loop position control of soft continuum arm using deep reinforcement learning. In 2019 International Conference on Robotics and Automation, ICRA 2019 (pp. 5133-5139). [8793653] (Proceedings - IEEE International Conference on Robotics and Automation; Vol. 2019-May). Institute of Electrical and Electronics Engineers Inc..

Cannon, J., Sanford, R. A., Connor, L., Yang, W., & Chee-Sanford, J. (2019). Optimization of PCR primers to detect phylogenetically diverse nrfA genes associated with nitrite ammonification. Journal of Microbiological Methods, 160, 49-59.

Higuti, V. A. H., Velasquez, A. E. B., Magalhaes, D. V., Becker, M., & Chowdhary, G. (2019). Under canopy light detection and ranging-based autonomous navigation. Journal of Field Robotics, 36(3), 547-567.

Berenbaum, M. R. (2019). Speaking of gender bias. Proceedings of the National Academy of Sciences of the United States of America, 116(17), 8086-8088.

Caetano-Anollés, D., Nasir, A., Kim, K. M., & Caetano-Anollés, G. (2019). Testing Empirical Support for Evolutionary Models that Root the Tree of Life. Journal of Molecular Evolution, 87(2-3), 131-142.

Li, S., Courbet, G., Ourry, A., & Ainsworth, E. (2019). Elevated Ozone Concentration Reduces Photosynthetic Carbon Gain but Does Not Alter Leaf Structural Traits, Nutrient Composition or Biomass in Switchgrass. Plants, 8(4), [85].,

Wedow, J. M., Yendrek, C. R., Mello, T. R., Creste, S., Martinez, C. A., & Ainsworth, E. A. (2019). Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO 2 ] and temperature Metabolomics, 15(4), [51].

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., ... Whitney, S. M. (2019). BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco. Plant Cell and Environment, 42(4), 1287-1301.

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., ... Williams, C. M. (2019). Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct, 3(4), [e00133].

Joshi, G., & Chowdhary, G. (2019). Hybrid direct-indirect adaptive control of nonlinear system with unmatched uncertainty. In 2019 6th International Conference on Control, Decision and Information Technologies, CoDIT 2019 (pp. 127-132). [8820301] (2019 6th International Conference on Control, Decision and Information Technologies, CoDIT 2019). Institute of Electrical and Electronics Engineers Inc..

Suriyavirun, N., Krichels, A. H., Kent, A. D., & Yang, W. H. (2019). Microtopographic differences in soil properties and microbial community composition at the field scale. Soil Biology and Biochemistry, 131, 71-80.

Leakey, A., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L., & Lobell, D. B. (2019). Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops Annual Review of Plant Biology, 70, 781-808.

Berenbaum, M. R. (2019). Out of Order. American Entomologist, 65(1), 3-5.

Baek, Y. S., Goodrich, L. V., Brown, P. J., James, B. T., Moose, S. P., Lambert, K. N., & Riechers, D. E. (2019). Transcriptome profiling and genome-wide association studies reveal Gsts and other defense genes involved in multiple signaling pathways induced by herbicide safener in grain sorghum. Frontiers in Plant Science, 10, [192].

Kumar, D., & Singh, V. (2019). Improving dry-fractionated corn fermentation by supplementation of corn germ meal and pasta mill feed from agro-food industries. Cereal Chemistry, 96(2), 243-251.

Pereira, I. S., do Nascimento, H. E. M., Vicari, M. B., Disney, M., DeLucia, E. H., Domingues, T., ... Hofhansl, F. (2019). Performance of laser-based electronic devices for structural analysis of Amazonian terra-firme forests. Remote Sensing, 11(5), [510].

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., ... Long, S. P. (2019). Reply to: Brazilian ethanol expansion subject to limitations. Nature Climate Change, 9(3), 211-212.

Juneja, A., Sharma, N., Cusick, R., & Singh, V. (2019). Techno-economic feasibility of phosphorus recovery as a coproduct from corn wet milling plants. Cereal Chemistry, 96(2), 380-390.

Juneja, A., Zhang, G., Jin, Y-S., & Singh, V. (2019). Bioprocessing and technoeconomic feasibility analysis of simultaneous production of D-psicose and ethanol using engineered yeast strain KAM-2GD. Bioresource Technology, 275, 27-34.

Valluru, R., Gazave, E. E., Fernandes, S. B., Ferguson, J. N., Lozano, R., Hirannaiah, P., ... Bandillo, N. (2019). Deleterious mutation burden and its association with complex traits in sorghum (Sorghum bicolor). Genetics, 211(3), 1075-1087.

Cheng, M. H., Dien, B. S., & Singh, V. (2019). Economics of plant oil recovery: A review. Biocatalysis and Agricultural Biotechnology, 18, [101056].

Köhler, I. H., Huber, S. C., Bernacchi, C. J., & Baxter, I. R. (2019). Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations. Plant Journal, 97(5), 872-886.

Bai, J., Sun, F., Wang, M., Su, L., Li, R., & Caetano-Anolles, G. (2019). Correction to: Genome-wide analysis of the MYB-CC gene family of maize (Genetica, (2019), 147, 1, (1-9), 10.1007/s10709-018-0042-y). Genetica, 147(1).

Bai, J., Sun, F., Wang, M., Su, L., Li, R., & Caetano-Anolles, G. (2019). Genome-wide analysis of the MYB-CC gene family of maize. Genetica, 147(1).

Krichels, A., Delucia, E. H., Sanford, R. A., Chee-Sanford, J., & Yang, W. (2019). Historical soil drainage mediates the response of soil greenhouse gas emissions to intense precipitation events. Biogeochemistry, 142(3), 425-442.

Kolbe, A. R., Studer, A. J., Cornejo, O. E., & Cousins, A. B. (2019). Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2. BMC genomics, 20(1), [138].

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., ... Wang, J. (2019). Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes. Plant Biotechnology Journal, 17(2), 488-498.

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., ... Zhang, J. (2019). Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum. BMC genomics, 20(1), [5437].

Joshi, G., & Chowdhary, G. (2019). Adaptive Control using Gaussian-Process with Model Reference Generative Network. In 2018 IEEE Conference on Decision and Control, CDC 2018 (pp. 237-243). [8619431] (Proceedings of the IEEE Conference on Decision and Control; Vol. 2018-December). Institute of Electrical and Electronics Engineers Inc..

Maske, H., & Chowdhary, G. (2019). Likelihood Rate Based Estimation of Nonstationary Markov Models. In 2018 IEEE Conference on Decision and Control, CDC 2018 (pp. 4759-4766). [8619316] (Proceedings of the IEEE Conference on Decision and Control; Vol. 2018-December). Institute of Electrical and Electronics Engineers Inc..

Jin, Z., Pagilla, P. R., Maske, H., & Chowdhary, G. (2019). Methods for Blended Shared Control of Hydraulic Excavators with Learning and Prediction. In 2018 IEEE Conference on Decision and Control, CDC 2018 (pp. 1973-1978). [8619826] (Proceedings of the IEEE Conference on Decision and Control; Vol. 2018-December). Institute of Electrical and Electronics Engineers Inc..

Jin, Z., Pagilla, P., Maske, H., & Chowdhary, G. (2019). Blended Shared Control with Subgoal Adjustment. In Proceedings - 2018 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2018 (pp. 2724-2729). [8616461] (Proceedings - 2018 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2018). Institute of Electrical and Electronics Engineers Inc..

Shen, Y. H., Yang, F. Y., Lu, B. G., Zhao, W. W., Jiang, T., Feng, L., ... Ming, R. (2019). Exploring the differential mechanisms of carotenoid biosynthesis in the yellow peel and red flesh of papaya. BMC genomics, 20(1), [49].

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., ... Bernacchi, C. (2019). Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system. Agricultural and Forest Meteorology, 264, 104-113.

Berenbaum, M. R. (2019). Proceedings of the national academy of sciences—its evolution and adaptation. Proceedings of the National Academy of Sciences of the United States of America, 116(3), 704-706.

South, P. F., Cavanagh, A. P., Liu, H. W., & Ort, D. R. (2019). Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field. Science, 363(6422), [eaat9077].

Axelrod, A., & Chowdhary, G. (2019). A dynamic risk form of entropic value at risk. In AIAA Scitech 2019 Forum (AIAA Scitech 2019 Forum). American Institute of Aeronautics and Astronautics Inc, AIAA.

Pignon, C. P., Lundgren, M. R., Osborne, C. P., & Long, S. P. (2019). Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling. Journal of experimental botany, 70(1), 357-365.

Krichels, A. H., & Yang, W. H. (Accepted/In press). Dynamic Controls on Field-Scale Soil Nitrous Oxide Hot Spots and Hot Moments Across a Microtopographic Gradient. Journal of Geophysical Research: Biogeosciences.

Caetano-Anollés, G., Aziz, M. F., Mughal, F., Gräter, F., Koç, I., Caetano-Anollés, K., & Caetano-Anollés, D. (2019). Emergence of Hierarchical Modularity in Evolving Networks Uncovered by Phylogenomic Analysis. Evolutionary Bioinformatics, 15.

Ngumbi, E. N., Hanks, L. M., Suarez, A. V., Millar, J. G., & Berenbaum, M. R. (Accepted/In press). Factors Associated with Variation in Cuticular Hydrocarbon Profiles in the Navel Orangeworm, Amyelois transitella (Lepidoptera: Pyralidae). Journal of Chemical Ecology.

Quindlen, J. F., Topcu, U., Chowdhary, G., & How, J. P. (2019). Failure-adverse closed-loop statistical verification. In AIAA Scitech 2019 Forum (AIAA Scitech 2019 Forum). American Institute of Aeronautics and Astronautics Inc, AIAA.

Berenbaum, M. R., & Liao, L. H. (Accepted/In press). Honey Bees and Environmental Stress: Toxicologic Pathology of a Superorganism. Toxicologic Pathology.

Challa, G. S., & Marshall-Colon, A. (2019). In silico crops and multi-omic approaches to meet agricultural challenges. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 14, [005].

Hanisch, P. E., Drager, K., Yang, W. H., Tubaro, P. L., & Suarez, A. V. (Accepted/In press). Intra- and interspecific variation in trophic ecology of ‘predatory’ ants in the subfamily Ponerinae. Ecological Entomology.

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A., & Mirbahar, A. A. (2019). Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan. Sarhad Journal of Agriculture, 35(3), 708-718.

Denisov, I. G., Schuler, M. A., & Sligar, S. (2019). Nanodiscs as a New Tool to Examine Lipid–Protein Interactions. In Methods in Molecular Biology (pp. 645-671). (Methods in Molecular Biology; Vol. 2003). Humana Press Inc..

Zerpa-Catanho, D. P., & Ming, R. (2019). Papaya sex chromosome evolution and domestication. Acta Horticulturae, 1250, 129-137.

Haschek, W. M., Berenbaum, M., Hinton, D. E., Cora, M., Chernoff, N., Travlos, G., ... Law, M. (Accepted/In press). Pathology in Ecological Research With Implications for One Health: Session Summary. Toxicologic Pathology.

Taylor, S. H., & Long, S. P. (2019). Phenotyping photosynthesis on the limit - a critical examination of RACiR. The New phytologist, 221(2), 621-624.

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E., & Long, S. P. (Accepted/In press). Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light. New Phytologist.

Calla, B., Wu, W. Y., Dean, C. A. E., Schuler, M. A., & Berenbaum, M. R. (2019). Substrate-specificity of cytochrome P450-mediated detoxification as an evolutionary strategy for specialization on furanocoumarin-containing hostplants: CYP6AE89 in parsnip webworms. Insect Molecular Biology.

Nguyen, J. K., & Ming, R. (2019). The papaya genome project: Fruitful insights, a decade later. Acta Horticulturae, 1250, 111-121.

Wolz, K. J., & DeLucia, E. H. (2019). Black walnut alley cropping is economically competitive with row crops in the Midwest USA. Ecological Applications, 29(1), [e01829].

Gog, L., Berenbaum, M. R., & Delucia, E. H. (2019). Mediation of Impacts of Elevated CO2 and Light Environment on Arabidopsis thaliana (L.) Chemical Defense against Insect Herbivory Via Photosynthesis. Journal of Chemical Ecology.

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., ... Ming, R. (2019). Recent polyploidization events in three Saccharum founding species. Plant Biotechnology Journal, 17(1), 264-274.

Kumar, D., Hager, A-S., Sun, A., Debyser, W., Javier Guagliano, B., & Singh, V. (2019). Improving Fermentation Rate during Use of Corn Grits in Beverage Alcohol Production. Beverages, 5(1).

McAllister, W., Osipychev, D., Chowdhary, G., & Davis, A. (2018). Multi-Agent Planning for Coordinated Robotic Weed Killing. In 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2018 (pp. 7955-7960). [8593429] (IEEE International Conference on Intelligent Robots and Systems). Institute of Electrical and Electronics Engineers Inc..

Dien, B. S., Mitchell, R. B., Bowman, M. J., Jin, V. L., Quarterman, J., Schmer, M. R., ... Slininger, P. J. (2018). Bioconversion of pelletized big bluestem, switchgrass, and low-diversity grass mixtures into sugars and bioethanol. Frontiers in Energy Research, 6(DEC), [129].

Bush, D. S., Siegel, J. P., & Berenbaum, M. R. (2018). Accelerated Development and Toxin Tolerance of the Navel Orangeworm Amyelois transitella (Lepidoptera: Pyralidae) in the Presence of Aspergillus flavus. Journal of Chemical Ecology, 44(12), 1170-1177.

Pradyawong, S., Juneja, A., Bilal Sadiq, M., Noomhorm, A., & Singh, V. (2018). Comparison of cassava starch with corn as a feedstock for bioethanol production. Energies, 11(12), [3476].

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., ... Ming, R. (2018). Erratum to: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. (Nature Genetics, (2018), 50, 11, (1565-1573), 10.1038/s41588-018-0237-2). Nature Genetics, 50(12).

Xu, H., Yu, Q., Shi, Y., Hua, X., Tang, H., Yang, L., ... Zhang, J. (2018). PGD: Pineapple Genomics Database. Horticulture Research, 5(1), [66].

Głowacka, K., Kromdijk, J., Kucera, K., Xie, J., Cavanagh, A. P., Leonelli, L., ... Long, S. P. (2018). Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop. Nature communications, 9(1), [868].

Tran, D., Do, H. M., Sheng, W., Bai, H., & Chowdhary, G. (2018). Real-time detection of distracted driving based on deep learning. IET Intelligent Transport Systems, 12(10), 1210-1219.

Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R. R., & Yu, Q. (2018). Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane. Scientific reports, 8(1), [4415].

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R., & Bernacchi, C. J. (2018). Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations. Plant Cell and Environment, 41(12), 2806-2820.

Kurambhatti, C. V., Kumar, D., Rausch, K. D., Tumbleson, M. E., & Singh, V. (2018). Increasing ethanol yield through fiber conversion in corn dry grind process. Bioresource Technology, 270, 742-745.

South, P. F., Cavanagh, A. P., Lopez-Calcagno, P. E., Raines, C. A., & Ort, D. R. (2018). Optimizing photorespiration for improved crop productivity. Journal of Integrative Plant Biology, 60(12), 1217-1230.

Colson, P., Levasseur, A., Scola, B. L., Sharma, V., Nasir, A., Pontarotti, P., ... Raoult, D. (2018). Ancestrality and mosaicism of giant viruses supporting the definition of the fourth TRUC of microbes. Frontiers in Microbiology, 9(NOV), [2668].

Hu, W., Hua, X., Zhang, Q., Wang, J., Shen, Q., Zhang, X., ... Zhang, J. (2018). New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics. BMC Plant Biology, 18(1), [270].

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., ... Ming, R. (2018). Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, 50(11), 1565-1573.

Wong, M. J., Liao, L. H., & Berenbaum, M. R. (2018). Biphasic concentration-dependent interaction between imidacloprid and dietary phytochemicals in honey bees (Apis mellifera). PloS one, 13(11), [e0206625].

Seong, K. M., Coates, B. S., Berenbaum, M. R., Clark, J. M., & Pittendrigh, B. R. (2018). Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R. Pest Management Science, 74(11), 2530-2543.

Kurambhatti, C. V., Kumar, D., Rausch, K. D., Tumbleson, M. E., & Singh, V. (2018). Ethanol production from corn fiber separated after liquefaction in the dry grind process. Energies, 11(11), [2921].

Caetano-Anollés, D., Caetano-Anollés, K., & Caetano-Anollés, G. (2018). Evolution of macromolecular structure: a 'double tale' of biological accretion and diversification. Science progress, 101(4), 360-383.

Caetano-Anolles, G., Nasir, A., Kim, K. M., & Caetano-Anollés, D. (2018). Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions. Evolutionary Bioinformatics, 14.

Calla, B., MacLean, M., Liao, L. H., Dhanjal, I., Tittiger, C., Blomquist, G. J., & Berenbaum, M. R. (2018). Functional characterization of CYP4G11—a highly conserved enzyme in the western honey bee Apis mellifera. Insect Molecular Biology, 27(5), 661-674.

Liu, M., Chowdhary, G., Castra Da Silva, B., Liu, S. Y., & How, J. P. (2018). Gaussian Processes for Learning and Control: A Tutorial with Examples. IEEE Control Systems, 38(5), 53-86. [8467518].

Kayacan, E., Young, S. N., Peschel, J. M., & Chowdhary, G. (2018). High-precision control of tracked field robots in the presence of unknown traction coefficients. Journal of Field Robotics, 35(7), 1050-1062.

Emberson, L. D., Pleijel, H., Ainsworth, E. A., van den Berg, M., Ren, W., Osborne, S., ... Van Dingenen, R. (2018). Ozone effects on crops and consideration in crop models. European Journal of Agronomy, 100, 19-34.

Zhu, P., Jin, Z., Zhuang, Q., Ciais, P., Bernacchi, C., Wang, X., ... Lobell, D. (2018). The important but weakening maize yield benefit of grain filling prolongation in the US Midwest. Global change biology, 24(10), 4718-4730.

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., ... Yu, Q. (2018). Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events. Frontiers in Plant Science, 9, [1414].

Koç, I., Yuksel, I., & Caetano-Anollés, G. (2018). Metabolite-centric reporter pathway and tripartite network analysis of Arabidopsis under cold stress. Frontiers in Bioengineering and Biotechnology, 6(SEP), [121].

Deng, Y., Hsiang, T., Li, S., Lin, L., Wang, Q., Chen, Q., ... Ming, R. (2018). Comparison of the mitochondrial genome sequences of six Annulohypoxylon stygium isolates suggests short fragment insertions as a potential factor leading to larger genomic size. Frontiers in Microbiology, 9(SEP), [2079].

Joshi, G., & Chowdhary, G. (2018). Cross-Domain Transfer in Reinforcement Learning Using Target Apprentice. In 2018 IEEE International Conference on Robotics and Automation, ICRA 2018 (pp. 7525-7532). [8462977] (Proceedings - IEEE International Conference on Robotics and Automation). Institute of Electrical and Electronics Engineers Inc..

Maske, H., Kieson, E., Chowdhary, G., & Abramson, C. (2018). Learning Task-Based Instructional Policy for Excavator-Like Robots. In 2018 IEEE International Conference on Robotics and Automation, ICRA 2018 (pp. 1962-1969). [8462923] (Proceedings - IEEE International Conference on Robotics and Automation). Institute of Electrical and Electronics Engineers Inc..

Wadlington, W. H., & Ming, R. R. (2018). Development of an X-specific marker and identification of YY individuals in spinach. Theoretical and Applied Genetics, 131(9), 1987-1994.

Bishop, K. A., Lemonnier, P., Quebedeaux, J. C., Montes, C. M., Leakey, A., & Ainsworth, E. (2018). Similar photosynthetic response to elevated carbon dioxide concentration in species with different phloem loading strategies. Photosynthesis research, 137(3), 453-464.

Quindlen, J. F., Topcu, U., Chowdhary, G., & How, J. P. (2018). Active Sampling for Closed-Loop Statistical Verification of Uncertain Nonlinear Systems. In 2018 Annual American Control Conference, ACC 2018 (pp. 6259-6265). [8431662] (Proceedings of the American Control Conference; Vol. 2018-June). Institute of Electrical and Electronics Engineers Inc..

Quindlen, J. F., Topcu, U., Chowdhary, G., & How, J. P. (2018). Closed-Loop Statistical Verification of Stochastic Nonlinear Systems Subject to Parametric Uncertainties. In 2018 Annual American Control Conference, ACC 2018 (Vol. 2018-June, pp. 5460-5466). [8431742] Institute of Electrical and Electronics Engineers Inc..

Maske, H., Kingravi, H. A., & Chowdhary, G. (2018). Sensor Selection via Observability Analysis in Feature Space. In 2018 Annual American Control Conference, ACC 2018 (pp. 1058-1064). [8431625] (Proceedings of the American Control Conference; Vol. 2018-June). Institute of Electrical and Electronics Engineers Inc..

Johnson, R. M., Harpur, B. A., Dogantzis, K. A., Zayed, A., & Berenbaum, M. R. (2018). Genomic footprint of evolution of eusociality in bees: floral food use and CYPome “blooms”. Insectes Sociaux, 65(3), 445-454.

Staley, J. T., & Caetano-Anolles, G. (2018). Archaea-First and the Co-Evolutionary Diversification of Domains of Life. BioEssays, 40(8), [1800036].

Wang, Z., Dien, B. S., Rausch, K. D., Tumbleson, M. E., & Singh, V. (2018). Fermentation of undetoxified sugarcane bagasse hydrolyzates using a two stage hydrothermal and mechanical refining pretreatment. Bioresource Technology, 261, 313-321.

Mills, G., Sharps, K., Simpson, D., Pleijel, H., Broberg, M., Uddling, J., ... Van Dingenen, R. (2018). Ozone pollution will compromise efforts to increase global wheat production. Global change biology, 24(8), 3560-3574.

Alkhalifah, N., Campbell, D. A., Falcon, C. M., Gardiner, J. M., Miller, N. D., Romay, M. C., ... Lawrence-Dill, C. J. (2018). Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. BMC Research Notes, 11(1), [452].

Liu, J., Chatham, L., Aryal, R., Yu, Q., & Ming, R. R. (2018). Differential methylation and expression of HUA1 ortholog in three sex types of papaya. Plant Science, 272, 99-106.

Edwards, J. D., Pittelkow, C. M., Kent, A. D., & Yang, W. (2018). Dynamic biochar effects on soil nitrous oxide emissions and underlying microbial processes during the maize growing season. Soil Biology and Biochemistry, 122, 81-90.

Zhu, X., Liang, C., Masters, M. D., Kantola, I. B., & Delucia, E. H. (2018). The impacts of four potential bioenergy crops on soil carbon dynamics as shown by biomarker analyses and DRIFT spectroscopy. GCB Bioenergy, 10(7), 489-500.

Varala, K., Marshall-Colón, A., Cirrone, J., Brooks, M. D., Pasquino, A. V., Léran, S., ... Coruzzi, G. M. (2018). Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants. Proceedings of the National Academy of Sciences of the United States of America, 115(25), 6494-6499.

Berenbaum, M. R. (2018). Cinema-tick experience. American Entomologist, 64(2), 67-70.

Wu, J., Wang, Y., Xu, J., Korban, S. S., Fei, Z., Tao, S., ... Zhang, S. (2018). Diversification and independent domestication of Asian and European pears. Genome biology, 19(1), [77].

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Erratum: Farming with crops and rocks to address global climate, food and soil security (Nature Plants (2018), DOI: 10.1038/s41477-018-0108-y). Nature Plants, 4(6).

Demkovich, M. R., Siegel, J. P., Walse, S. S., & Berenbaum, M. R. (2018). Impact of agricultural adjuvants on the toxicity of the diamide insecticides chlorantraniliprole and flubendiamide on different life stages of the navel orangeworm (Amyelois transitella). Journal of Pest Science, 91(3), 1127-1136.

Kolbe, A. R., Brutnell, T. P., Cousins, A. B., & Studer, A. J. (2018). Carbonic anhydrase mutants in zea mays have altered stomatal responses to environmental signals. Plant physiology, 177(3), 980-989.

Caetano-Anollés, K., Caetano-Anollés, D., Nasir, A., Kim, K. M., & Caetano-Anolles, G. (2018). Order and polarity in character state transformation models that root the tree of life. Biochimie, 149, 135-136.

Ainsworth, E., & Lemonnier, P. (2018). Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]? Current opinion in plant biology, 43, 50-56.

Kirpich, A., Ainsworth, E. A., Wedow, J. M., Newman, J. R. B., Michailidis, G., & McIntyre, L. M. (2018). Variable selection in omics data: A practical evaluation of small sample sizes. PloS one, 13(6), [e0197910].

Christensen, A. J., Srinivasan, V., Hart, J. C., & Marshall-Colon, A. (2018). Use of computational modeling combined with advanced visualization to develop strategies for the design of crop ideotypes to address food security. Nutrition reviews, 76(5), 332-347.

Kumar, D., Juneja, A., & Singh, V. (2018). Fermentation technology to improve productivity in dry grind corn process for bioethanol production. Fuel Processing Technology, 173, 66-74.

Somavat, P., Kumar, D., & Singh, V. (2018). Techno-economic feasibility analysis of blue and purple corn processing for anthocyanin extraction and ethanol production using modified dry grind process. Industrial Crops and Products, 115, 78-87.

De Souza, A. P., & Long, S. P. (2018). Toward improving photosynthesis in cassava: Characterizing photosynthetic limitations in four current African cultivars. Food and Energy Security, 7(2), [e00130].

Petronikolou, N., Hollatz, A. J., Schuler, M. A., & Nair, S. K. (2018). Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside. ChemBioChem, 19(8), 784-788.

Wolz, K. J., Branham, B. E., & Delucia, E. H. (2018). Reduced nitrogen losses after conversion of row crop agriculture to alley cropping with mixed fruit and nut trees. Agriculture, Ecosystems and Environment, 258, 172-181.

Berenbaum, M. (2018). Damselflies in Distress. American Entomologist, 64(1), 3-6.

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., ... Wang, K. (2018). Chromosome Nomenclature and Cytological Characterization of Sacred Lotus. Cytogenetic and Genome Research, 153(4), 223-231.

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., ... Hansen, J. (2018). Farming with crops and rocks to address global climate, food and soil security /631/449 /706/1143 /704/47 /704/106 perspective. Nature Plants, 4(3), 138-147.

Wang, Z., Sharma, V., Dien, B. S., & Singh, V. (2018). High-conversion hydrolysates and corn sweetener production in dry-grind corn process: Cereal Chemistry, 95(2), 302-311.

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., ... McNamara, N. P. (2018). Consensus, uncertainties and challenges for perennial bioenergy crops and land use. GCB Bioenergy, 10(3), 150-164.

Wolz, K. J., Lovell, S. T., Branham, B. E., Eddy, W. C., Keeley, K., Revord, R. S., ... Delucia, E. H. (2018). Frontiers in alley cropping: Transformative solutions for temperate agriculture. Global change biology, 24(3), 883-894.

Gomez-Casanovas, N., Delucia, N. J., Bernacchi, C., Boughton, E. H., Sparks, J. P., Chamberlain, S. D., & Delucia, E. H. (2018). Grazing alters net ecosystem C fluxes and the global warming potential of a subtropical pasture. Ecological Applications, 28(2), 557-572.

Kumar, D., Long, S. P., & Singh, V. (2018). Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation. GCB Bioenergy, 10(2), 92-107.

Banan, D., Paul, R. E., Feldman, M. J., Holmes, M. W., Schlake, H., Baxter, I., ... Leakey, A. D. B. (2018). High-fidelity detection of crop biomass quantitative trait loci from low-cost imaging in the field. Plant Direct, 2(2), [e00041].

Jin, Z., Ainsworth, E., Leakey, A., & Lobell, D. B. (2018). Increasing drought and diminishing benefits of elevated carbon dioxide for soybean yields across the US Midwest. Global change biology, 24(2), e522-e533.

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B., & Ort, D. R. (2018). Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis. Plant physiology, 176(2), 1215-1232.

Miao, G., Guan, K., Yang, X., Bernacchi, C. J., Berry, J. A., DeLucia, E. H., ... Masters, M. D. (2018). Sun-Induced Chlorophyll Fluorescence, Photosynthesis, and Light Use Efficiency of a Soybean Field from Seasonally Continuous Measurements. Journal of Geophysical Research: Biogeosciences, 123(2), 610-623.

Slattery, R. A., Walker, B. J., Weber, A. P. M., & Ort, D. R. (2018). The impacts of fluctuating light on crop performance. Plant physiology, 176(2), 990-1003.

Wolz, K. J., & Delucia, E. H. (2018). Alley cropping: Global patterns of species composition and function. Agriculture, Ecosystems and Environment, 252, 61-68.

Bender, K. W., Zielinski, R. E., & Huber, S. C. (2018). Revisiting paradigms of Ca2+ signaling protein kinase regulation in plants. Biochemical Journal, 475(1), 207-223.

Berenbaum, M. R. (2018). Preface: Valedictory from a Gadfly Grammarian. Annual Review of Entomology, 63, v-ix.

Liu, J., Sharma, A., Niewiara, M. J., Singh, R., Ming, R. R., & Yu, Q. (2018). Papain-like cysteine proteases in Carica papaya: Lineage-specific gene duplication and expansion. BMC genomics, 19(1), [26].

Quindlen, J. F., Topcu, U., Chowdhary, G., & How, J. P. (2018). Active sampling-based binary verification of dynamical systems. In AIAA Guidance, Navigation, and Control (210039 ed.). (AIAA Guidance, Navigation, and Control Conference, 2018; No. 210039). American Institute of Aeronautics and Astronautics Inc, AIAA.

Kolbe, A. R., Studer, A. J., & Cousins, A. B. (2018). Biochemical and transcriptomic analysis of maize diversity to elucidate drivers of leaf carbon isotope composition. Functional Plant Biology, 45(5), 489-500.

Kim, S. M., Lee, D., Thapa, S., Dien, B. S., Tumbleson, M. E., Rausch, K. D., & Singh, V. (2018). Cellulosic ethanol potential of feedstocks grown on marginal lands. Transactions of the ASABE, 61(6), 1775-1782.

Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E., & Singh, V. (Accepted/In press). Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production. JAOCS, Journal of the American Oil Chemists' Society.

Caddell, D. F., Wei, T., Sharma, S., Oh, M. H., Park, C. J., Canlas, P., ... Ronald, P. C. (2018). Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to Xanthomonas oryzae pv. oryzae. PeerJ, 2018(12), [e6074].

Orozco-Arias, S., Liu, J., Tabares-Soto, R., Ceballos, D., Domingues, D. S., Garavito, A., ... Guyot, R. (2018). Inpactor, integrated and parallel analyzer and classifier of LTR retrotransposons and ITS application for pineapple LTR retrotransposons diversity and dynamics. Biology, 7(2), [32].

Larson, T. H., Balikian, R. J., Ruiz-Vera, U., & Ort, D. R. (2018). In-situ cassava root size measurement using ground penetrating radar (GPR). Proceedings of the Symposium on the Application of Geophyics to Engineering and Environmental Problems, SAGEEP, 2018-March.

Twohey, R. J., Roberts, L. M., & Studer, A. J. (Accepted/In press). Leaf stable carbon isotope composition reflects transpiration efficiency in Zea mays. Plant Journal.

Berenbaum, M. R. (2018). Reality bites. American Entomologist, 64(3), 134-137.

Shamshiri, R. R., Weltzien, C., Hameed, I. A., Yule, I. J., Grift, T. E., Balasundram, S. K., ... Chowdhary, G. (2018). Research and development in agricultural robotics: A perspective of digital farming. International Journal of Agricultural and Biological Engineering, 11(4), 1-14.

Pattanaik, A., Tang, Z., Liu, S., Bommannan, G., & Chowdhary, G. (2018). Robust Deep Reinforcement Learning with adversarial attacks. In 17th International Conference on Autonomous Agents and Multiagent Systems, AAMAS 2018 (Vol. 3, pp. 2040-2042). International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS).

Shamshiri, R. R., Hameed, I. A., Pitonakova, L., Weltzien, C., Balasundram, S. K., Yule, I. J., ... Chowdhary, G. (2018). Simulation software and virtual environments for acceleration of agricultural robotics: Features highlights and performance comparison. International Journal of Agricultural and Biological Engineering, 11(4), 15-31.

Berenbaum, M. R. (2018). The superposition principle. American Entomologist, 64(4), 204-206.

LeBauer, D. S., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P., & Dietze, M. C. (2018). BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production. GCB Bioenergy, 10(1), 61-71.

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C., & Delucia, E. H. (2018). Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States. Biomass and Bioenergy, 108, 312-322.