Gene Networks in Neural & Developmental Plasticity: Publications

Ghaffari, S., Hanson, C., Schmidt, R. E., Bouchonville, K. J., Offer, S. M., & Sinha, S. (2021). An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes. Genome biology, 22(1), [19]. https://doi.org/10.1186/s13059-020-02213-x

Zwilling, C. E., Strang, A., Anderson, E., Jurcsisn, J., Johnson, E., Das, T., Kuchan, M. J., & Barbey, A. K. (2021). Author Correction: Enhanced physical and cognitive performance in active duty Airmen: evidence from a randomized multimodal physical fitness and nutritional intervention (Scientific Reports, (2020), 10, 1, (17826), 10.1038/s41598-020-74140-7). Scientific reports, 11(1), [3820]. https://doi.org/10.1038/s41598-021-81800-9

Witt, K. E., Yarlagadda, K., Allen, J. M., Bader, A. C., Simon, M. L., Kuehn, S. R., Swanson, K. S., Cross, T. W. L., Hedman, K. M., Ambrose, S. H., & Malhi, R. S. (2021). Author Correction: Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet (Scientific Reports, (2021), 11, 1, (3113), 10.1038/s41598-021-82362-6). Scientific reports, 11(1), [11445]. https://doi.org/10.1038/s41598-021-90889-x

Brandt, J. R., Saidah, S. H., Zhao, K., Ishida, Y., Apriyana, I., Ryder, O. A., Ramono, W., Sudoyo, H., Suryadi, H., Van Coeverden de Groot, P. J., & Roca, A. L. (2021). Characterization of 29 polymorphic microsatellite markers developed by genomic screening of Sumatran rhinoceros (Dicerorhinus sumatrensis). BMC Research Notes, 14(1), [119]. https://doi.org/10.1186/s13104-021-05522-x

Emad, A., & Sinha, S. (2021). Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study. npj Systems Biology and Applications, 7(1), [9]. https://doi.org/10.1038/s41540-021-00169-7

Witt, K. E., Yarlagadda, K., Allen, J. M., Bader, A. C., Simon, M. L., Kuehn, S. R., Swanson, K. S., Cross, T. W. L., Hedman, K. M., Ambrose, S. H., & Malhi, R. S. (2021). Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet. Scientific reports, 11(1), [3113]. https://doi.org/10.1038/s41598-021-82362-6

Mahajan, T., & Dar, R. D. (2021). Internetwork connectivity of molecular networks across species of life. Scientific reports, 11(1), [1168]. https://doi.org/10.1038/s41598-020-80745-9

McEwen, G. K., Alquezar-Planas, D. E., Dayaram, A., Gillett, A., Tarlinton, R., Mongan, N., Chappell, K. J., Henning, J., Tan, M., Timms, P., Young, P. R., Roca, A. L., & Greenwood, A. D. (2021). Retroviral integrations contribute to elevated host cancer rates during germline invasion. Nature communications, 12(1), [1316]. https://doi.org/10.1038/s41467-021-21612-7

Jin, D., Song, X., Yu, Z., Liu, Z., Zhang, H., Cheng, Z., & Han, J. (2021). BiTe-GCN: A New GCN Architecture via Bidirectional Convolution of Topology and Features on Text-Rich Networks. In WSDM 2021 - Proceedings of the 14th ACM International Conference on Web Search and Data Mining (pp. 157-165). (WSDM 2021 - Proceedings of the 14th ACM International Conference on Web Search and Data Mining). Association for Computing Machinery, Inc. https://doi.org/10.1145/3437963.3441774

Zhang, Y., Chen, X., Meng, Y., & Han, J. (2021). Hierarchical Metadata-Aware Document Categorization under Weak Supervision. In WSDM 2021 - Proceedings of the 14th ACM International Conference on Web Search and Data Mining (pp. 770-778). (WSDM 2021 - Proceedings of the 14th ACM International Conference on Web Search and Data Mining). Association for Computing Machinery, Inc. https://doi.org/10.1145/3437963.3441730

Reiner Brodetzki, T., Lotem, A., Safran, R. J., & Hauber, M. E. (2021). Lack of subspecies-recognition in breeding Barn Swallows (Hirundo rustica transitiva). Behavioural Processes, 189, [104422]. https://doi.org/10.1016/j.beproc.2021.104422

Pollock, H. S., Hoover, J. P., Uy, F. M. K., & Hauber, M. E. (2021). Brood Parasites Are a Heterogeneous and Functionally Distinct Class of Natural Enemies. Trends in Parasitology, 37(7), 588-596. https://doi.org/10.1016/j.pt.2021.02.005

Lewis, J. A., Mendenhall, R., Ojiemwen, A., Thomas, M., Riopelle, C., Harwood, S. A., & Browne Huntt, M. (2021). Racial Microaggressions and Sense of Belonging at a Historically White University. American Behavioral Scientist, 65(8), 1049-1071. https://doi.org/10.1177/0002764219859613

Murugan, A., Husain, K., Rust, M., Bass, J. T., Hepler, C., Pietsch, J. M. J., Swain, P. S., Toettcher, J. E., Jena, S., Chakraborty, A. K., Sprenger, K. G., Mora, T., Walczak, A., Rivoire, O., Wang, S., Wood, K., Kussell, E., Skanata, A., Ranganathan, R., ... Goldenfeld, N. (2021). Roadmap on biology in time varying environments. Physical Biology, 18(4), [041502]. https://doi.org/10.1088/1478-3975/abde8d

Antonson, N. D., Rivera, M., Abolins-Abols, M., Kleindorfer, S., Liu, W. C., & Hauber, M. E. (2021). Early acoustic experience alters genome-wide methylation in the auditory forebrain of songbird embryos. Neuroscience Letters, 755, [135917]. https://doi.org/10.1016/j.neulet.2021.135917

Flucher, S. M., Krapf, P., Arthofer, W., Suarez, A. V., Crozier, R. H., Steiner, F. M., & Schlick-Steiner, B. C. (2021). Effect of social structure and introduction history on genetic diversity and differentiation. Molecular ecology, 30(11), 2511-2527. https://doi.org/10.1111/mec.15911

Withers, S. J., Parsons, S., Hauber, M. E., Kendrick, A., & Lavery, S. D. (2021). Genetic divergence between isolated populations of the North Island New Zealand Rifleman (Acanthisitta chloris granti) implicates ancient biogeographic impacts rather than recent habitat fragmentation. Ecology and Evolution, 11(11), 5998-6014. https://doi.org/10.1002/ece3.7358

Barg, A., Dolecek, L., Gabrys, R., Katona, G. O. H., Korner, J., McGregor, A., Milenkovic, O., Mesnager, S., & Zemor, G. (2021). Guest Editorial Special Issue: 'From Deletion-Correction to Graph Reconstruction: In Memory of Vladimir I. Levenshtein'. IEEE Transactions on Information Theory, 67(6), 3187-3189. [9437360]. https://doi.org/10.1109/TIT.2021.3072555

Magory Cohen, T., Major, R. E., Kumar, R. S., Nair, M., Ewart, K. M., Hauber, M. E., & Dor, R. (2021). Rapid morphological changes as agents of adaptation in introduced populations of the common myna (Acridotheres tristis). Evolutionary Ecology, 35(3), 443-462. https://doi.org/10.1007/s10682-021-10107-y

Behnke, G. D., Kim, N., Zabaloy, M. C., Riggins, C. W., Rodriguez-Zas, S., & Villamil, M. B. (2021). Soil Microbial Indicators within Rotations and Tillage Systems. Microorganisms, 9(6). https://doi.org/10.3390/microorganisms9061244

Blanco, A., Mahajan, T., Coronado, R. A., Ma, K., Demma, D. R., & Dar, R. D. (2021). Synergistic Chromatin-Modifying Treatments Reactivate Latent HIV and Decrease Migration of Multiple Host-Cell Types. Viruses, 13(6). https://doi.org/10.3390/v13061097

Turner, A. M., & Hauber, M. E. (2021). The American robin (Turdus migratorius): A focal species for anti-parasitic egg rejection studies among hosts of the brown-headed cowbird (Molothrus ater). Ethology, 127(6), 490-503. https://doi.org/10.1111/eth.13158

You, S., Chaney, E. J., Tu, H., Sun, Y., Sinha, S., & Boppart, S. A. (2021). Label-free deep profiling of the tumor microenvironment. Cancer Research, 81(9), 2534-2544. https://doi.org/10.1158/0008-5472.CAN-20-3124

Strickland, L. R., Fuller, R. C., Windsor, D., & Cáceres, C. E. (2021). A potential role for overdominance in the maintenance of colour variation in the Neotropical tortoise beetle, Chelymorpha alternans. Journal of Evolutionary Biology, 34(5), 779-791. https://doi.org/10.1111/jeb.13779

Wang, M., Monaco, M. H., Hauser, J., Yan, J., Dilger, R. N., & Donovan, S. M. (2021). Bovine milk oligosaccharides and human milk oligosaccharides modulate the gut microbiota composition and volatile fatty acid concentrations in a preclinical neonatal model. Microorganisms, 9(5), [884]. https://doi.org/10.3390/microorganisms9050884

Lawson, S. L., Enos, J. K., Mendes, N. C., Gill, S. A., & Hauber, M. E. (2021). Pairing status moderates both the production of and responses to anti-parasitic referential alarm calls in male yellow warblers. Ethology, 127(5), 385-394. https://doi.org/10.1111/eth.13139

Cerca, J., Maurstad, M. F., Rochette, N. C., Rivera-Colón, A. G., Rayamajhi, N., Catchen, J. M., & Struck, T. H. (2021). Removing the bad apples: A simple bioinformatic method to improve loci-recovery in de novo RADseq data for non-model organisms. Methods in Ecology and Evolution, 12(5), 805-817. https://doi.org/10.1111/2041-210X.13562

Atherton, O. E., Grijalva, E., Roberts, B. W., & Robins, R. W. (2021). Stability and Change in Personality Traits and Major Life Goals From College to Midlife. Personality and social psychology bulletin, 47(5), 841-858. https://doi.org/10.1177/0146167220949362

Lee, M. J., Rittschof, C. C., Greenlee, A. J., Turi, K. N., Rodriguez-Zas, S. L., Robinson, G. E., Cole, S. W., & Mendenhall, R. (2021). Transcriptomic Analyses of Black Women in Neighborhoods with High Levels of Violence. Psychoneuroendocrinology, 127, [105174]. https://doi.org/10.1016/j.psyneuen.2021.105174

Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., ... Zhang, G. (2021). Author Correction: Dense sampling of bird diversity increases power of comparative genomics (Nature, (2020), 587, 7833, (252-257), 10.1038/s41586-020-2873-9). Nature, 592(7856), E24. https://doi.org/10.1038/s41586-021-03473-8

Tkachenko, A. V., Maslov, S., Elbanna, A., Wong, G. N., Weiner, Z. J., & Goldenfeld, N. (2021). Time-dependent heterogeneity leads to transient suppression of the COVID-19 epidemic, not herd immunity. Proceedings of the National Academy of Sciences of the United States of America, 118(17). https://doi.org/10.1073/pnas.2015972118

Lu, Y., Singh, H., Singh, A., & Dar, R. D. (2021). A transient heritable memory regulates HIV reactivation from latency. iScience, 24(4), [102291]. https://doi.org/10.1016/j.isci.2021.102291

von Schaumburg, P., Rodriguez-Zas, S. L., Southey, B. R., de Godoy, M., He, F., & Parsons, C. M. (2021). White and red sorghum as primary carbohydrate sources in extruded diets of felines. Frontiers in Veterinary Science, 8, [668255]. https://doi.org/10.3389/fvets.2021.668255

Clark, D. L., Hauber, M. E., & Anderson, P. S. L. (2021). Nest substrate and tool shape significantly affect the mechanics and energy requirements of avian eggshell puncture. The Journal of experimental biology, 224(8), [jeb.238832]. https://doi.org/10.1242/jeb.238832

Capodiferro, M. R., Aram, B., Raveane, A., Rambaldi Migliore, N., Colombo, G., Ongaro, L., Rivera, J., Mendizábal, T., Hernández-Mora, I., Tribaldos, M., Perego, U. A., Li, H., Scheib, C. L., Modi, A., Gòmez-Carballa, A., Grugni, V., Lombardo, G., Hellenthal, G., Pascale, J. M., ... Achilli, A. (2021). Archaeogenomic distinctiveness of the Isthmo-Colombian area. Cell, 184(7), 1706-1723.e24. https://doi.org/10.1016/j.cell.2021.02.040

Chembazhi, U. V., Bangru, S., Hernaez, M., & Kalsotra, A. (2021). Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver. Genome Research, 31(4), 576-591. https://doi.org/10.1101/gr.267013.120

Scharf, H. M., Abolins-Abols, M., Stenstrom, K. H., Tolman, D. T., Schelsky, W. M., & Hauber, M. E. (2021). Exposure to a mimetic or non-mimetic model avian brood parasite egg does not produce differential glucocorticoid responses in an egg-accepter host species. General and Comparative Endocrinology, 304, [113723]. https://doi.org/10.1016/j.ygcen.2021.113723

Gulley, J. M., & Izenwasser, S. (2021). Adolescent drug addiction. Pharmacology Biochemistry and Behavior, 203, [173151]. https://doi.org/10.1016/j.pbb.2021.173151

Fleming, S. A., Hauser, J., Yan, J., Donovan, S. M., Wang, M., & Dilger, R. N. (2021). A Mediation Analysis to Identify Links between Gut Bacteria and Memory in Context of Human Milk Oligosaccharides. Microorganisms, 9(4), [846]. https://doi.org/10.3390/microorganisms9040846

Wang, Y., & Zhao, S. D. (2021). A nonparametric empirical Bayes approach to large-scale multivariate regression. Computational Statistics and Data Analysis, 156, [107130]. https://doi.org/10.1016/j.csda.2020.107130

Rymut, H. E., Rund, L. A., Bolt, C. R., Villamil, M. B., Bender, D. E., Southey, B. R., Johnson, R. W., & Rodriguez-Zas, S. L. (2021). Biochemistry and immune biomarkers indicate interacting effects of pre-and postnatal stressors in pigs across sexes. Animals, 11(4), [987]. https://doi.org/10.3390/ani11040987

Alfaro, G. F., Rodriguez-Zas, S. L., Southey, B. R., Muntifering, R. B., Rodning, S. P., Pacheco, W. J., & Moisá, S. J. (2021). Complete blood count analysis on beef cattle exposed to fescue toxicity and rumen-protected niacin supplementation. Animals, 11(4), [988]. https://doi.org/10.3390/ani11040988

Wickland, D. P., Ren, Y., Sinnwell, J. P., Reddy, J. S., Pottier, C., Sarangi, V., Carrasquillo, M. M., Ross, O. A., Younkin, S. G., Ertekin-Taner, N., Rademakers, R., Hudson, M. E., Mainzer, L. S., Biernacka, J. M., & Asmann, Y. W. (2021). Impact of variant-level batch effects on identification of genetic risk factors in large sequencing studies. PloS one, 16(4 April), [e0249305]. https://doi.org/10.1371/journal.pone.0249305

Luo, J., Zhang, B., & Roberts, B. W. (2021). Sensitization or inoculation: Investigating the effects of early adversity on personality traits and stress experiences in adulthood. PloS one, 16(4), [e0248822]. https://doi.org/10.1371/journal.pone.0248822

Scharf, H. M., Hauber, M. E., Mommer, B. C., Hoover, J. P., & Schelsky, W. M. (2021). The effect of avian brood parasitism on physiological responses of host nestlings. Oecologia, 195(4), 861-872. https://doi.org/10.1007/s00442-021-04888-w

Chen, E., Zielinski, C., Deno, J., Singh, R., Bell, A. M., & Hellmann, J. K. (2021). The specificity of sperm-mediated paternal effects in threespine sticklebacks. Behavioral Ecology and Sociobiology, 75(4), [68]. https://doi.org/10.1007/s00265-021-03001-8

Southey, B. R., Zhang, P., Keever, M. R., Rymut, H. E., Johnson, R. W., Sweedler, J. V., & Rodriguez-Zas, S. L. (2021). Effects of maternal immune activation in porcine transcript isoforms of neuropeptide and receptor genes. Journal of Integrative Neuroscience, 20(1), 21-31. https://doi.org/10.31083/j.jin.2021.01.332

Farahany, N. A., & Robinson, G. E. (2021). The rise and fall of the “warrior gene” defense. Science, 371(6536), 1320-1320. https://doi.org/10.1126/science.abh4479

Lu, Y., Bohn-Wippert, K., Pazerunas, P. J., Moy, J. M., Singh, H., & Dar, R. D. (2021). Screening for gene expression fluctuations reveals latency-promoting agents of HIV. Proceedings of the National Academy of Sciences of the United States of America, 118(11), [e2012191118]. https://doi.org/10.1073/pnas.2012191118

Schartl, M., Kneitz, S., Ormanns, J., Schmidt, C., Anderson, J. L., Amores, A., Catchen, J., Wilson, C., Geiger, D., Du, K., Garcia-Olazábal, M., Sudaram, S., Winkler, C., Hedrich, R., Warren, W. C., Walter, R., Meyer, A., & Postlethwait, J. H. (2021). The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Current Biology, 31(5), 911-922.e4. https://doi.org/10.1016/j.cub.2020.11.028

Booher, D. B., Gibson, J. C., Liu, C., Longino, J. T., Fisher, B. L., Janda, M., Narula, N., Toulkeridou, E., Mikheyev, A. S., Suarez, A. V., & Economo, E. P. (2021). Functional innovation promotes diversification of form in the evolution of an ultrafast trap-jaw mechanism in ants. PLoS biology, 19(3), [e3001031]. https://doi.org/10.1371/journal.pbio.3001031

Roca, A. L. (2021). Million-year-old DNA provides a glimpse of mammoth evolution. Nature, 591(7849), 208-209. https://doi.org/10.1038/d41586-021-00348-w

Fine, J. D., Torres, K. M., Martin, J., & Robinson, G. E. (2021). Assessing agrochemical risk to mated honey bee queens. Journal of Visualized Experiments, 2021(169), 1-16. [e62316]. https://doi.org/10.3791/62316

Ruzi, S. A., Zalamea, P. C., Roche, D. P., Achury, R., Dalling, J. W., & Suarez, A. V. (2021). Can variation in seed removal patterns of Neotropical pioneer tree species be explained by local ant community composition? Biotropica, 53(2), 619-631. https://doi.org/10.1111/btp.12904

Marton, A., Fülöp, A., Bán, M., Hauber, M. E., & Moskát, C. (2021). Female common cuckoo calls dampen the mobbing intensity of great reed warbler hosts. Ethology, 127(3), 286-293. https://doi.org/10.1111/eth.13126

Chatterjee, P., & Goldenfeld, N. (2021). Field-theoretic model for chemotaxis in run and tumble particles. Physical Review E, 103(3), [032603]. https://doi.org/10.1103/PhysRevE.103.032603

Martin, L. B., Hanson, H. E., Hauber, M. E., & Ghalambor, C. K. (2021). Genes, Environments, and Phenotypic Plasticity in Immunology. Trends in Immunology, 42(3), 198-208. https://doi.org/10.1016/j.it.2021.01.002

Ducay, R. L., Luro, A. B., Hansen, E. S., & Hauber, M. E. (2021). Multicomponent shell traits are consistent with an individual recognition function of the appearance of common murre (Uria aalge) eggs: A biological replication study. Ecology and Evolution, 11(5), 2402-2409. https://doi.org/10.1002/ece3.7264

Chen, Z., Traniello, I. M., Rana, S., Cash-Ahmed, A. C., Sankey, A. L., Yang, C., & Robinson, G. E. (Accepted/In press). Neurodevelopmental and transcriptomic effects of CRISPR/Cas9-induced somatic orco mutation in honey bees. Journal of Neurogenetics, 1-13. https://doi.org/10.1080/01677063.2021.1887173

Fischer, E. K., Song, Y., Hughes, K. A., Zhou, W., & Hoke, K. L. (2021). Nonparallel transcriptional divergence during parallel adaptation. Molecular ecology, 30(6), 1516-1530. https://doi.org/10.1111/mec.15823

Achury, R., Holway, D. A., & Suarez, A. V. (2021). Pervasive and persistent effects of ant invasion and fragmentation on native ant assemblages. Ecology, 102(3), [e03257]. https://doi.org/10.1002/ecy.3257

Stieger, M., Flückiger, C., Rüegger, D., Kowatsch, T., Roberts, B. W., & Allemand, M. (2021). Changing personality traits with the help of a digital personality change intervention. Proceedings of the National Academy of Sciences of the United States of America, 118(8), [e2017548118]. https://doi.org/10.1073/pnas.2017548118

Roberts, B. W., & Nickel, L. B. (2021). Personality Development across the Life Course: A Neo-Socioanalytic Perspective. In O. P. John, & R. W. Robins (Eds.), Handbook of Personality: Theory and Research (4 ed., pp. 11). Guilford Press.

Perri, A. R., Feuerborn, T. R., Frantz, L. A. F., Larson, G., Malhi, R. S., Meltzer, D. J., & Witt, K. E. (2021). Dog domestication and the dual dispersal of people and dogs into the Americas. Proceedings of the National Academy of Sciences of the United States of America, 118(6), [e2010083118]. https://doi.org/10.1073/pnas.2010083118

You, J. S., Singh, N., Reyes-Ordonez, A., Khanna, N., Bao, Z., Zhao, H., & Chen, J. (2021). Erratum: ARHGEF3 regulates skeletal muscle regeneration and strength through autophagy (Cell Reports (2021) 34(1), (S2211124720315837), (10.1016/j.celrep.2020.108594)). Cell Reports, 34(6), [108731]. https://doi.org/10.1016/j.celrep.2021.108731

Cerca, J., Colon, A. G. R., Ferreira, M. S., Ravinet, M., Nowak, M. D., Catchen, J. M., & Struck, T. H. (2021). Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species. PeerJ, 9, [e10896]. https://doi.org/10.7717/peerj.10896

de Flamingh, A., Coutu, A., Sealy, J., Chirikure, S., Bastos, A. D. S., Libanda-Mubusisi, N. M., Malhi, R. S., & Roca, A. L. (2021). Sourcing Elephant Ivory from a Sixteenth-Century Portuguese Shipwreck. Current Biology, 31(3), 621-628.e4. https://doi.org/10.1016/j.cub.2020.10.086

Tkachenko, A. V., Maslov, S., Wang, T., Elbanna, A., Wong, G. N., & Goldenfeld, N. (2021). Stochastic social behavior coupled to COVID-19 dynamics leads to waves, plateaus and an endemic state. (medRxiv). Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/2021.01.28.21250701

Shinn, L. M., Li, Y., Mansharamani, A., Auvil, L. S., Welge, M. E., Bushell, C. B., Khan, N. A., Charron, C. S., Novotny, J. A., Baer, D. J., Zhu, R., & Holscher, H. D. (2021). Fecal Bacteria as Biomarkers for Predicting Food Intake in Healthy Adults. The Journal of nutrition, 151(2), 423-433. https://doi.org/10.1093/jn/nxaa285

Rutledge, S., Carr, D. E., Hauber, M. E., & Hanley, D. (2021). Best of a bad job or masters of illusion: Do nest light conditions make the eggs of brood parasitic brown-headed cowbirds (Molothrus ater) more similar to the eggs of their hosts? Ethology, 127(2), 117-124. https://doi.org/10.1111/eth.13109

Schmill, M. P., Cadney, M. D., Thompson, Z., Hiramatsu, L., Albuquerque, R. L., McNamara, M. P., Castro, A. A., Kay, J. C., Buenaventura, D. G., Ramirez, J. L., Rhodes, J. S., & Garland, T. (2021). Conditioned Place Preference for Cocaine and Methylphenidate in Female Mice from Lines Selectively Bred for High Voluntary Wheel-Running Behavior. Genes, Brain and Behavior, 20(2), [e12700]. https://doi.org/10.1111/gbb.12700

Rivera-Colón, A. G., Rochette, N. C., & Catchen, J. M. (2021). Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data. Molecular ecology resources, 21(2), 363-378. https://doi.org/10.1111/1755-0998.13163

Soto, C. J., Napolitano, C. M., & Roberts, B. W. (2021). Taking Skills Seriously: Toward an Integrative Model and Agenda for Social, Emotional, and Behavioral Skills. Current Directions in Psychological Science, 30(1), 26-33. https://doi.org/10.1177/0963721420978613

Sacks, B. N., Lounsberry, Z. T., Rando, H. M., Kluepfel, K., Fain, S. R., Brown, S. K., & Kukekova, A. V. (2021). Sequencing Red Fox Y Chromosome Fragments to Develop Phylogenetically Informative SNP Markers and Glimpse Male-Specific Trans-Pacific Phylogeography. Genes, 12(1), 1-10. [97]. https://doi.org/10.3390/genes12010097

Ramp, J., Parker, C. G., Rhodes, J. S., & Malik, P. (2021). Comment on "service Dogs and Safety in Academic Laboratories". Journal of Chemical Education, 98(1), 250-251. https://doi.org/10.1021/acs.jchemed.0c00982

Calla, B., Demkovich, M., Siegel, J. P., Viana, J. P. G., Walden, K. K. O., Robertson, H. M., & Berenbaum, M. R. (2021). Selective sweeps in a nutshell: the genomic footprint of rapid insecticide resistance evolution in the almond agroecosystem. Genome biology and evolution, 13(1). https://doi.org/10.1093/gbe/evaa234

You, J-S., Singh, N., Reyes-Ordonez, A., Khanna, N., Bao, Z., Zhao, H., & Chen, J. (2021). ARHGEF3 Regulates Skeletal Muscle Regeneration and Strength through Autophagy. Cell Reports, 34(1), 108594. [108594]. https://doi.org/10.1016/j.celrep.2020.108594

Inzlicht, M., Werner, K. M., Briskin, J. L., & Roberts, B. W. (2021). Integrating Models of Self-Regulation. Annual review of psychology, 72, 319-345. https://doi.org/10.1146/annurev-psych-061020-105721

Hauber, M. E., Winnicki, S. K., Hoover, J. P., Hanley, D., & Hays, I. R. (2021). The limits of egg recognition: Testing acceptance thresholds of American robins in response to decreasingly egg-shaped objects in the nest. Royal Society Open Science, 8(1), [201615]. https://doi.org/10.1098/rsos.201615

Liu, X., Machado, R. A., & Milenkovic, O. (2021). Directed Intersection Representations and the Information Content of Digraphs. IEEE Transactions on Information Theory, 67(1), 347-357. [9236641]. https://doi.org/10.1109/TIT.2020.3033168

Moskát, C., Taylor, D. M., & Hauber, M. E. (2021). Effective conspecific communication with aberrant calls in the common cuckoo (Cuculus canorus). Behavioral Ecology and Sociobiology, 75(1), [7]. https://doi.org/10.1007/s00265-020-02946-6

Berdan, E. L., Fuller, R. C., & Kozak, G. M. (2021). Genomic landscape of reproductive isolation in Lucania killifish: The role of sex loci and salinity. Journal of Evolutionary Biology, 34(1), 157-174. https://doi.org/10.1111/jeb.13725

Kim, N., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C., & Villamil, M. B. (2021). Long-term residue removal under tillage decreases amoA-nitrifiers and stimulates nirS-denitrifier groups in the soil. Applied Soil Ecology, 157, [103730]. https://doi.org/10.1016/j.apsoil.2020.103730

Wetzel, E., Lang, F. J., Back, M. D., Vecchione, M., Rogoza, R., & Roberts, B. W. (2021). Measurement Invariance of Three Narcissism Questionnaires Across the United States, the United Kingdom, and Germany. Assessment, 28(1), 29-43. https://doi.org/10.1177/1073191120907967

Li, D., & Hauber, M. E. (2021). Parasitic begging calls of nestmate-evictor common cuckoos stimulate more parental provisions by red-winged blackbirds than calls of nest-sharing brown-headed cowbirds. Behavioral Ecology and Sociobiology, 75(1), [11]. https://doi.org/10.1007/s00265-020-02955-5

Tian, Y., & Smith-Bolton, R. K. (2021). Regulation of growth and cell fate during tissue regeneration by the two SWI/SNF chromatin-remodeling complexes of Drosophila. Genetics, 217(1), [iyaa028]. https://doi.org/10.1093/GENETICS/IYAA028

Hauber, M. E., Taylor, D. M., & Brawn, J. D. (2021). Variable or atypical? Comparing unusual songs of the Tufted Titmouse with a citizen-science database. Journal of Ornithology, 162(1), 313-316. https://doi.org/10.1007/s10336-020-01839-9

Hauber, M. E., Elek, Z., & Moskát, C. (Accepted/In press). Advancing onset of breeding dates in brood parasitic common cuckoos and their great reed warbler hosts over a 22-year period. Ethology Ecology and Evolution. https://doi.org/10.1080/03949370.2021.1871968

Zhao, S. D., & Biscarri, W. (Accepted/In press). A Regression Modeling Approach to Structured Shrinkage Estimation. Journal of the American Statistical Association. https://doi.org/10.1080/01621459.2021.1875838

You, J. S., & Chen, J. (2021). Autophagy-dependent regulation of skeletal muscle regeneration and strength by a RHOGEF. Autophagy, 17(4), 1044-1045. https://doi.org/10.1080/15548627.2021.1886721

Fulmer, A. G., & Hauber, M. E. (2021). Autopreening behaviour may convey information about internal social state in Arabian babbler (Turdoides squamiceps) allopreening dyads. Behaviour, 158(5), 427-446. https://doi.org/10.1163/1568539X-bja10073

Ramp, J., Parker, C. G., Rhodes, J. S., & Malik, P. (Accepted/In press). Barriers to inclusion: Service dog handlers in science laboratories. Disability and Health Journal, [101070]. https://doi.org/10.1016/j.dhjo.2021.101070

Zhang, C., & Han, J. (2021). Data Mining and Knowledge Discovery. In Urban Book Series (pp. 797-814). (Urban Book Series). Springer. https://doi.org/10.1007/978-981-15-8983-6_42

Winnicki, S. K., Strausberger, B. M., Antonson, N. D., Burhans, D. E., Lock, J., Kilpatrick, A. M., & Hauber, M. E. (2021). Developmental asynchrony and host species identity predict variability in nestling growth of an obligate brood parasite: A test of the growth-tuning hypothesis. Canadian journal of zoology, 99(3), 213-220. https://doi.org/10.1139/cjz-2020-0147

Taneja, I., Damhorst, G. L., Lopez-Espina, C., Zhao, S. D., Zhu, R., Khan, S., White, K., Kumar, J., Vincent, A., Yeh, L., Majdizadeh, S., Weir, W., Isbell, S., Skinner, J., Devanand, M., Azharuddin, S., Meenakshisundaram, R., Upadhyay, R., Syed, A., ... Bashir, R. (Accepted/In press). Diagnostic and prognostic capabilities of a biomarker and EMR-based machine learning algorithm for sepsis. Clinical and Translational Science. https://doi.org/10.1111/cts.13030

Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., Dilger, R. N., Erdman, J. W., Burd, N. A., Holscher, H. D., & Khan, N. A. (Accepted/In press). Dietary lutein plus zeaxanthin and choline intake is interactively associated with cognitive flexibility in middle-adulthood in adults with overweight and obesity. Nutritional Neuroscience. https://doi.org/10.1080/1028415X.2020.1866867

Lawson, S. L., Enos, J. K., Antonson, N. D., Gill, S. A., & Hauber, M. E. (Accepted/In press). Do hosts of avian brood parasites discriminate parasitic vs. predatory threats? A meta-analysis. In Advances in the Study of Behavior (Advances in the Study of Behavior). Academic Press Inc.. https://doi.org/10.1016/bs.asb.2021.03.002

Zhang, P., Southey, B. R., Sweedler, J. V., Pradhan, A., & Rodriguez-Zas, S. L. (2021). Enhanced understanding of molecular interactions and function underlying pain processes through networks of transcript isoforms, genes, and gene families. Advances and Applications in Bioinformatics and Chemistry, 14, 49-69. https://doi.org/10.2147/AABC.S284986

Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (Accepted/In press). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences. https://doi.org/10.1007/s12561-021-09310-w

Zhu, W., Gong, H., Shen, J., Zhang, C., Shang, J., Bhat, S., & Han, J. (2021). FUSE: Multi-faceted Set Expansion by Coherent Clustering of Skip-Grams. In F. Hutter, K. Kersting, J. Lijffijt, & I. Valera (Eds.), Machine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2020, Proceedings (pp. 617-632). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12459 LNAI). Springer. https://doi.org/10.1007/978-3-030-67664-3_37

Hudson, K. A., & Hudson, M. E. (Accepted/In press). Genetic Variation for Seed Oil Biosynthesis in Soybean. Plant Molecular Biology Reporter. https://doi.org/10.1007/s11105-020-01276-1

Dau, S. H., Dinh, T. X., Kiah, H. M., Luong, T. T., & Milenkovic, O. (Accepted/In press). Repairing Reed-Solomon Codes via Subspace Polynomials. IEEE Transactions on Information Theory. https://doi.org/10.1109/TIT.2021.3071878

Cross, K. J., Mendenhall, R., Clancy, K. B. H., Imoukhuede, P., & Amos, J. (2021). The Pieces of Me: The Double Bind of Race and Gender in Engineering. Journal of Women and Minorities in Science and Engineering, 27(3), 79-105. https://doi.org/10.1615/JWomenMinorScienEng.2021034902

Rodrigues, M. A., Mendenhall, R., & Clancy, K. B. H. (2021). "There's realizing, and then there’s realizing": How social support can counter gaslighting of women of color scientists. Journal of Women and Minorities in Science and Engineering, 27(2), 1-23. https://doi.org/10.1615/JWomenMinorScienEng.2020034630

Shen, W., Yin, Y., Yang, Y., Han, J., Wang, J., & Yuan, X. (Accepted/In press). Toward Tweet Entity Linking with Heterogeneous Information Networks. IEEE Transactions on Knowledge and Data Engineering. https://doi.org/10.1109/TKDE.2021.3068093

King, W. P., Amos, J., Azer, M., Baker, D., Bashir, R., Best, C., Bethke, E., Boppart, S. A., Bralts, E., Corey, R. M., Dietkus, R., Durack, G., Elbel, S., Elliott, G., Fava, J., Goldenfeld, N., Goldstein, M. H., Hayes, C., Herndon, N., ... Wooldridge, A. R. (2020). Emergency ventilator for COVID-19. PloS one, 15(12), e0244963. [e0244963]. https://doi.org/10.1371/journal.pone.0244963

Jones, B. M., Rao, V. D., Gernat, T., Jagla, T., Cash-ahmed, A. C., Rubin, B. E., Comi, T. J., Bhogale, S., Husain, S. S., Blatti, C., Middendorf, M., Sinha, S., Chandrasekaran, S., & Robinson, G. E. (2020). Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks. eLife, 9. https://doi.org/10.7554/eLife.62850

Choi, S. H., Rao, V. D., Gernat, T., Hamilton, A. R., Robinson, G. E., & Goldenfeld, N. (2020). Individual variations lead to universal and cross-species patterns of social behavior. Proceedings of the National Academy of Sciences of the United States of America, 117(50), 31754-31759. https://doi.org/10.1073/pnas.2002013117

Hiscox, L. V., McGarry, M. D. J., Schwarb, H., Van Houten, E. E. W., Pohlig, R. T., Roberts, N., Huesmann, G. R., Burzynska, A. Z., Sutton, B. P., Hillman, C. H., Kramer, A. F., Cohen, N. J., Barbey, A. K., Paulsen, K. D., & Johnson, C. L. (2020). Standard-space atlas of the viscoelastic properties of the human brain. Human Brain Mapping, 41(18), 5282-5300. https://doi.org/10.1002/hbm.25192

Buonasera, T., Eerkens, J., de Flamingh, A., Engbring, L., Yip, J., Li, H., Haas, R., DiGiuseppe, D., Grant, D., Salemi, M., Nijmeh, C., Arellano, M., Leventhal, A., Phinney, B., Byrd, B. F., Malhi, R. S., & Parker, G. (2020). A comparison of proteomic, genomic, and osteological methods of archaeological sex estimation. Scientific reports, 10(1), [11897]. https://doi.org/10.1038/s41598-020-68550-w

Yazdi, S. M. H. T., Gabrys, R., & Milenkovic, O. (2020). Author Correction: Portable and Error-Free DNA-Based Data Storage (Scientific Reports, (2017), 7, 1, (5011), 10.1038/s41598-017-05188-1). Scientific reports, 10(1), [7026]. https://doi.org/10.1038/s41598-020-60080-9

Tabatabaei, S. K., Wang, B., Athreya, N. B. M., Enghiad, B., Hernandez, A. G., Fields, C. J., Leburton, J. P., Soloveichik, D., Zhao, H., & Milenkovic, O. (2020). DNA punch cards for storing data on native DNA sequences via enzymatic nicking. Nature communications, 11(1), [1742]. https://doi.org/10.1038/s41467-020-15588-z

McGhee, K. E., Paitz, R. T., Baker, J. A., Foster, S. A., & Bell, A. M. (2020). Effects of predation risk on egg steroid profiles across multiple populations of threespine stickleback. Scientific reports, 10(1), [5239]. https://doi.org/10.1038/s41598-020-61412-5

Zwilling, C. E., Strang, A., Anderson, E., Jurcsisn, J., Johnson, E., Das, T., Kuchan, M. J., & Barbey, A. K. (2020). Enhanced physical and cognitive performance in active duty Airmen: evidence from a randomized multimodal physical fitness and nutritional intervention. Scientific reports, 10(1), [17826]. https://doi.org/10.1038/s41598-020-74140-7

Mitros, T., Session, A. M., James, B. T., Wu, G. A., Belaffif, M. B., Clark, L. V., Shu, S., Dong, H., Barling, A., Holmes, J. R., Mattick, J. E., Bredeson, J. V., Liu, S., Farrar, K., Głowacka, K., Jeżowski, S., Barry, K., Chae, W. B., Juvik, J. A., ... Rokhsar, D. S. (2020). Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature communications, 11(1), [5442]. https://doi.org/10.1038/s41467-020-18923-6

Smith, B. P., Auvil, L. S., Welge, M., Bushell, C. B., Bhargava, R., Elango, N., Johnson, K., & Madak-Erdogan, Z. (2020). Identification of early liver toxicity gene biomarkers using comparative supervised machine learning. Scientific reports, 10(1), [19128]. https://doi.org/10.1038/s41598-020-76129-8

Lee, M. J., Collins, J. D., Harwood, S. A., Mendenhall, R., & Huntt, M. B. (2020). “If you aren’t White, Asian or Indian, you aren’t an engineer”: racial microaggressions in STEM education. International Journal of STEM Education, 7(1), [48]. https://doi.org/10.1186/s40594-020-00241-4

Athreya, N., Milenkovic, O., & Leburton, J. P. (2020). Interaction dynamics and site-specific electronic recognition of DNA-nicks with 2D solid-state nanopores. npj 2D Materials and Applications, 4(1), [32]. https://doi.org/10.1038/s41699-020-00166-0

Traniello, I. M., Bukhari, S. A., Kevill, J., Ahmed, A. C., Hamilton, A. R., Naeger, N. L., Schroeder, D. C., & Robinson, G. E. (2020). Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation. Scientific reports, 10(1), [3101]. https://doi.org/10.1038/s41598-020-59808-4

Pindus, D. M., Zwilling, C. E., Jarrett, J. S., Talukdar, T., Schwarb, H., Anderson, E., Cohen, N. J., Barbey, A. K., Kramer, A. F., & Hillman, C. H. (2020). Opposing associations between sedentary time and decision-making competence in young adults revealed by functional connectivity in the dorsal attention network. Scientific reports, 10(1), [13993]. https://doi.org/10.1038/s41598-020-70679-7

De Flamingh, A., Coutu, A., Sealy, J., Chirikure, S., Bastos, A. D. S., Libanda-Mubusisi, N. M., Malhi, R. S., & Roca, A. L. (Accepted/In press). Sourcing Elephant Ivory from a Sixteenth-Century Portuguese Shipwreck. Current Biology. https://doi.org/10.1016/j.cub.2020.10.086

Phillips, E., DeAngelis, R., Gogola, J. V., & Rhodes, J. S. (2020). Spontaneous alloparental care of unrelated offspring by non-breeding Amphiprion ocellaris in absence of the biological parents. Scientific reports, 10(1), [4610]. https://doi.org/10.1038/s41598-020-61537-7

Chang, C. H., & Fuller, R. C. (2020). The Eye Size of the Bluefin Killifish (Lucania goodei) Varies from Springs to Swamps. Copeia, 108(4), 758-766. https://doi.org/10.1643/CI-19-330

Westbrook, S. R., & Gulley, J. M. (2020). Effects of the GluN2B antagonist, Ro 25-6981, on extinction consolidation following adolescent- or adult-onset methamphetamine self-administration in male and female rats. Behavioural Pharmacology, 31(8), 748-758. https://doi.org/10.1097/FBP.0000000000000586

Gardner, J. C., Dvoretskiy, S. V., Yang, Y., Venkataraman, S., Lange, D. A., Li, S., Boppart, A. L., Kim, N., Rendeiro, C., Boppart, M. D., & Rhodes, J. S. (2020). Electrically stimulated hind limb muscle contractions increase adult hippocampal astrogliogenesis but not neurogenesis or behavioral performance in male C57BL/6J mice. Scientific reports, 10(1), [19319]. https://doi.org/10.1038/s41598-020-76356-z

Achury, R., Chacón de Ulloa, P., Arcila, Á., & Suarez, A. V. (2020). Habitat disturbance modifies dominance, coexistence, and competitive interactions in tropical ant communities. Ecological Entomology, 45(6), 1247-1262. https://doi.org/10.1111/een.12908

Hellmann, J. K., Bukhari, S. A., Deno, J., & Bell, A. M. (2020). Sex-specific plasticity across generations I: Maternal and paternal effects on sons and daughters. Journal of Animal Ecology, 89(12), 2788-2799. https://doi.org/10.1111/1365-2656.13364

Hellmann, J. K., Carlson, E. R., & Bell, A. M. (2020). Sex-specific plasticity across generations II: Grandpaternal effects are lineage specific and sex specific. Journal of Animal Ecology, 89(12), 2800-2812. https://doi.org/10.1111/1365-2656.13365

Stamps, J. A., & Bell, A. M. (2020). The information provided by the absence of cues: insights from Bayesian models of within and transgenerational plasticity. Oecologia, 194(4), 585-596. https://doi.org/10.1007/s00442-020-04792-9

Gernat, T., Jagla, T., Jones, B. M., Middendorf, M., & Robinson, G. E. (2020). Automated monitoring of animal behaviour with barcodes and convolutional neural networks. Unknown Journal. https://doi.org/10.1101/2020.11.27.401760

Rymut, H. E., Bolt, C. R., Caputo, M. P., Houser, A. K., Antonson, A. M., Zimmerman, J. D., Villamil, M. B., Southey, B. R., Rund, L. A., Johnson, R. W., & Rodriguez-Zas, S. L. (2020). Long-Lasting Impact of Maternal Immune Activation and Interaction With a Second Immune Challenge on Pig Behavior. Frontiers in Veterinary Science, 7, [561151]. https://doi.org/10.3389/fvets.2020.561151

Achury, R., Holway, D. A., & Suarez, A. V. (Accepted/In press). Pervasive and persistent effects of ant invasion and fragmentation on native ant assemblages. Ecology, [e03257]. https://doi.org/10.1002/ecy.3257

Saha, A., Seward, C. H., Stubbs, L., & Mizzen, C. A. (2020). Site-Specific Phosphorylation of Histone H1.4 Is Associated with Transcription Activation. International journal of molecular sciences, 21(22), 1-21. [8861]. https://doi.org/10.3390/ijms21228861

Hedman, H. D., Varga, C., Brown, W. M., Shelton, P., Roca, A. L., Novakofski, J. E., & Mateus‐Pinilla, N. E. (2020). Spatial analysis of chronic wasting disease in free‐ranging white‐tailed deer ( Odocoileus virginianus ) in Illinois, 2008–2019. Transboundary and Emerging Diseases. https://doi.org/10.1111/tbed.13901

Wong, G. N., Weiner, Z. J., Tkachenko, A. V., Elbanna, A., Maslov, S., & Goldenfeld, N. (2020). Modeling COVID-19 Dynamics in Illinois under Nonpharmaceutical Interventions. Physical Review X, 10(4), [041033]. https://doi.org/10.1101/2020.06.03.20120691, https://doi.org/10.1103/PhysRevX.10.041033

Liu, X., & Milenkovic, O. (2020). Finding the second-best candidate under the mallows model. Unknown Journal.

Park, J., Jayaraman, A., Schrader, A. W., Hwang, G. W., & Han, H-S. (2020). Controllable modulation of precursor reactivity using chemical additives for systematic synthesis of high-quality quantum dots. Nature communications, 11(1), 5748. https://doi.org/10.1038/s41467-020-19573-4

Kim, N., Zabaloy, M. C., Riggins, C. W., Rodríguez-Zas, S., & Villamil, M. B. (2020). Microbial Shifts Following Five Years of Cover Cropping and Tillage Practices in Fertile Agroecosystems. Microorganisms, 8(11), [1773]. https://doi.org/10.3390/microorganisms8111773

Gabrys, R., Pattabiraman, S., Rana, V., Ribeiro, J., Cheraghchi, M., Guruswami, V., & Milenkovic, O. (2020). AC-DC: Amplification Curve Diagnostics for Covid-19 Group Testing. (arXiv:2011.05223).

Chatterjee, P., & Goldenfeld, N. (2020). A field-theoretic model for chemotaxis in run and tumble particles. Unknown Journal.

Tabe-Bordbar, S., Song, Y. J., Lunt, B. J., Prasanth, K. V., & Sinha, S. (2020). Mechanistic analysis of enhancer sequences in the Estrogen Receptor transcriptional program. Unknown Journal. https://doi.org/10.1101/2020.11.08.373555

Xie, Y. R., Castro, D. C., Lam, F., & Sweedler, J. V. (2020). Accelerating Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Imaging Using a Subspace Approach. Journal of the American Society for Mass Spectrometry, 31(11), 2338-2347. https://doi.org/10.1021/jasms.0c00276

Calla, B., Demkovich, M., Siegel, J. P., Viana, J. P. G., Walden, K. K. O., Robertson, H. M., & Berenbaum, M. R. (2020). Selective sweeps in a nutshell: the genomic footprint of rapid insecticide resistance evolution in the almond agroecosystem. Genome biology and evolution. https://doi.org/10.1093/gbe/evaa234

Eagleman, D. E., Zhu, J., Liu, D. C., Seimetz, J., Kalsotra, A., & Tsai, N. P. (2020). Unbiased Proteomic Screening Identifies a Novel Role for the E3 Ubiquitin Ligase Nedd4-2 in Translational Suppression During ER Stress. Journal of Neurochemistry. https://doi.org/10.1111/jnc.15219

Chee, Y. M., Colbourn, C. J., Dau, H., Gabrys, R., Ling, A. C. H., Lusi, D., & Milenkovic, O. (2020). Access balancing in storage systems by labeling partial Steiner systems. Designs, Codes, and Cryptography, 88(11), 2361-2376. https://doi.org/10.1007/s10623-020-00786-z

Hauber, M. E., Heath, S. K., & Tonra, C. M. (2020). Direct Estimates of Breeding Site Fidelity and Natal Philopatry in Brood Parasitic Brown-Headed Cowbirds Molothrus ater. Ardea, 108(2), 129-137. https://doi.org/10.5253/arde.v108i2.a6

Anderson, P. S. L., Rivera, M. D., & Suarez, A. (2020). “Simple” Biomechanical Model for Ants Reveals How Correlated Evolution among Body Segments Minimizes Variation in Center of Mass as Heads Get Larger. Integrative and comparative biology, 60(5), 1193-1207. https://doi.org/10.1093/icb/icaa027

Westbrook, S. R., Carrica, L. K., Banks, A., & Gulley, J. M. (2020). AMPed-up adolescents: The role of age in the abuse of amphetamines and its consequences on cognition and prefrontal cortex development. Pharmacology Biochemistry and Behavior, 198, [173016]. https://doi.org/10.1016/j.pbb.2020.173016

SUN, QINYU., HAO, QINYU., LIN, YO. CHUEN., SONG, YOU. JIN., BANGRU, SUSHANT., ARIF, WAQAR., TRIPATHI, VIDISHA., ZHANG, YANG., CHO, JUNG. HYUN., FREIER, SUSAN. M., JENKINS, LISA. M., MA, JIAN., YOON, JE. HYUN., KALSOTRA, AUINASH., LAL, ASHISH., PRASANTH, SUPRIYA. G., & PRASANTH, KANNANGANATTU. V. (2020). Antagonism between splicing and microprocessor complex dictates the serum-induced processing of lnc-MIRHG for efficient cell cycle reentry. RNA, 26(11), 1603-1620. https://doi.org/10.1261/rna.075309.120

Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., ... Zhang, G. (2020). Dense sampling of bird diversity increases power of comparative genomics. Nature, 587(7833), 252-257. https://doi.org/10.1038/s41586-020-2873-9

Pinedo, P., Santos, J. E. P., Chebel, R. C., Galvão, K. N., Schuenemann, G. M., Bicalho, R. C., Gilbert, R. O., Rodriguez Zas, S., Seabury, C. M., Rosa, G., & Thatcher, W. W. (2020). Early-lactation diseases and fertility in 2 seasons of calving across US dairy herds. Journal of Dairy Science, 103(11), 10560-10576. https://doi.org/10.3168/jds.2019-17951

Shpigler, H. Y., Herb, B., Drnevich, J., Band, M., Robinson, G. E., & Bloch, G. (2020). Juvenile hormone regulates brain-reproduction tradeoff in bumble bees but not in honey bees. Hormones and Behavior, 126, [104844]. https://doi.org/10.1016/j.yhbeh.2020.104844

Tkachenko, A. V., Maslov, S., Elbanna, A., Wong, G., Weiner, Z., & Goldenfeld, N. (2020). Time-dependent heterogeneity leads to transient suppression of COVID-19 epidemic, not herd immunity. (medRxiv). Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/2020.07.26.20162420

Tkachenko, A. V., Maslov, S., Elbanna, A., Wong, G. N., Weiner, Z. J., & Goldenfeld, N. (2020). Time-dependent heterogeneity leads to transient suppression of COVID-19 epidemic, not herd immunity. Unknown Journal. https://doi.org/10.1101/2020.07.26.20162420

Luro, A. B., Fernández-Juricic, E., Baumhardt, P., & Hauber, M. E. (2020). Visual acuity and egg spatial chromatic contrast predict egg rejection behavior of American robins. The Journal of experimental biology, 223. https://doi.org/10.1242/jeb.229609

Kim, B. S., Kim, M. K., Cho, Y., Hamed, E. E., Gillette, M. U., Cha, H., Miljkovic, N., Aakalu, V. K., Kang, K., Son, K. N., Schachtschneider, K. M., Schook, L. B., Hu, C., Popescu, G., Park, Y., Ballance, W. C., Yu, S., Im, S. G., Lee, J., ... Kong, H. (2020). Electrothermal soft manipulator enabling safe transport and handling of thin cell/tissue sheets and bioelectronic devices. Science Advances, 6(42), [eabc5630]. https://doi.org/10.1126/sciadv.abc5630

Meng, Y., Zhang, Y., Huang, J., Xiong, C., Ji, H., Zhang, C., & Han, J. (2020). Text classification using label names only: A language model self-training approach. Unknown Journal.

Huang, J., Xie, Y., Meng, Y., Zhang, Y., & Han, J. (2020). CoRel: Seed-guided topical taxonomy construction by concept learning and relation transferring. Unknown Journal.

Huang, J., Meng, Y., Guo, F., Ji, H., & Han, J. (2020). Weakly-supervised aspect-based sentiment analysis via joint aspect-sentiment topic embedding. Unknown Journal.

Zhu, W., Zhang, C., Yao, S., Gao, X., & Han, J. (2020). A spherical hidden markov model for semantics-rich human mobility modeling. Unknown Journal.

Smith, B. N., Hannas, M., Orso, C., Martins, S. M. M. K., Wang, M., Donovan, S. M., & Dilger, R. N. (2020). Dietary osteopontin-enriched algal protein as nutritional support in weaned pigs infected with F18-fimbriated enterotoxigenic Escherichia coli. Journal of animal science, 98(10). https://doi.org/10.1093/jas/skaa314

Roca, A. L. (2020). Evolution: Untangling the Woolly Rhino’s Extinction. Current Biology, 30(19), R1087-R1090. https://doi.org/10.1016/j.cub.2020.08.021

Shen, J., Ji, H., & Han, J. (2020). Near-imperceptible neural linguistic steganography via self-adjusting arithmetic coding. Unknown Journal.

Dong, J., Zielinski, R. E., & Hudson, M. E. (2020). t-SNAREs bind the Rhg1 α-SNAP and mediate soybean cyst nematode resistance. Plant Journal, 104(2), 318-331. https://doi.org/10.1111/tpj.14923

Cheraghchi, M., Gabrys, R., Milenkovic, O., & Ribeiro, J. (2020). Coded Trace Reconstruction. IEEE Transactions on Information Theory, 66(10), 6084-6103. [9097932]. https://doi.org/10.1109/TIT.2020.2996377

Shinn, L. M., Li, Y., Mansharamani, A., Auvil, L. S., Welge, M. E., Bushell, C., Khan, N. A., Charron, C. S., Novotny, J. A., Baer, D. J., Zhu, R., & Holscher, H. D. (2020). Fecal Bacteria as Biomarkers for Predicting Food Intake in Healthy Adults. The Journal of nutrition. https://doi.org/10.1093/jn/nxaa285

Mao, Y., Qu, Y., Xie, Y., Ren, X., & Han, J. (2020). Multi-document summarization with maximal marginal relevance-guided reinforcement learning. Unknown Journal.

Shen, J., Qiu, W., Shang, J., Vanni, M., Ren, X., & Han, J. (2020). SynSetExpan: An iterative framework for joint entity set expansion and synonym discovery. Unknown Journal.

Dibaeinia, P., & Sinha, S. (2020). SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks. Cell Systems, 11(3), 252-271.e11. https://doi.org/10.1016/j.cels.2020.08.003

Sinha, S., Jones, B. M., Traniello, I. M., Bukhari, S. A., Halfon, M. S., Hofmann, H. A., Huang, S., Katz, P. S., Keagy, J., Lynch, V. J., Sokolowski, M. B., Stubbs, L. J., Tabe-Bordbar, S., Wolfner, M. F., & Robinson, G. E. (2020). Behavior-related gene regulatory networks: A new level of organization in the brain. Proceedings of the National Academy of Sciences of the United States of America, 117(38), 23270-23279. https://doi.org/10.1073/pnas.1921625117

Boyce, W. T., Sokolowski, M. B., & Robinson, G. E. (2020). Genes and environments, development and time. Proceedings of the National Academy of Sciences of the United States of America, 117(38), 23235-23241. https://doi.org/10.1073/pnas.2016710117

Perrin-Stowe, T. I. N., Ishida, Y., Terrill, E. E., Hamlin, B. C., Penfold, L., Cusack, L. M., Novakofski, J., Mateus-Pinilla, N. E., & Roca, A. L. (Accepted/In press). Prion protein gene (PRNP) sequences suggest differing vulnerability to chronic wasting disease for Florida Key deer (Odocoileus virginianus clavium) and Columbian white-tailed deer (O. v. leucurus). The Journal of heredity, [esaa040]. https://doi.org/10.1093/jhered/esaa040

Mao, Y., He, P., Liu, X., Shen, Y., Gao, J., Han, J., & Chen, W. (2020). Generation-augmented retrieval for open-domain question answering. Unknown Journal.

Catchen, J., Amores, A., & Bassham, S. (Accepted/In press). Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny. G3 (Bethesda, Md.). https://doi.org/10.1534/g3.120.401485

Zhu, Q., Xu, Y., Wang, H., Zhang, C., Han, J., & Yang, C. (2020). Transfer learning of graph neural networks with ego-graph information maximization. Unknown Journal.

Schmill, M. P., Cadney, M. D., Thompson, Z., Hiramatsu, L., Albuquerque, R. L., McNamara, M. P., Castro, A. A., Kay, J. C., Buenaventura, D. G., Ramirez, J. L., Rhodes, J. S., & Garland, T. (Accepted/In press). Conditioned Place Preference for Cocaine and Methylphenidate in Female Mice from Lines Selectively Bred for High Voluntary Wheel-Running Behavior. Genes, Brain and Behavior, [e12700]. https://doi.org/10.1111/gbb.12700

Jones, B. M., Rao, V. D., Gernat, T., Jagla, T., Cash-Ahmed, A., Rubin, B. E. R., Comi, T. J., Bhogale, S., Husain, S. S., Blatti, C., Middendorf, M., Sinha, S., Chandrasekaran, S., & Robinson, G. E. (2020). Individual differences in honey bee (Apis mellifera) behavior enabled by plasticity in brain gene regulatory networks. Unknown Journal. https://doi.org/10.1101/2020.09.09.289272

Elbanna, A., Wong, G. N., Weiner, Z. J., Wang, T., Zhang, H., Liu, Z., Tkachenko, A. V., Maslov, S., & Goldenfeld, N. (2020). Entry screening and multi-layer mitigation of COVID-19 cases for a safe university reopening. (medRxiv). Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/2020.08.29.20184473

Elbanna, A., Wong, G. N., Weiner, Z. J., Wang, T., Zhang, H., Liu, Z., Tkachenko, A. V., Maslov, S., & Goldenfeld, N. (2020). Entry screening and multi-layer mitigation of COVID-19 cases for a safe university reopening. Unknown Journal. https://doi.org/10.1101/2020.08.29.20184473

Louder, M. I. M., Schelsky, W., Hoover, J. P., Louder, A. N. A., & Hauber, M. E. (2020). A seasonal shift in offspring sex ratio of the brood parasitic Brown‐headed Cowbird (Molothrus ater). Journal of Avian Biology, 51(9), [JAV12697]. https://doi.org/10.1111/jav.02560

Wen, Y., Chen, J., Li, J., Arif, W., Kalsotra, A., & Irudayaraj, J. (2020). Effect of PFOA on DNA Methylation and Alternative Splicing in Mouse Liver. Toxicology Letters, 329, 38-46. https://doi.org/10.1016/j.toxlet.2020.04.012

Zhou, R. R., Wang, L., & Zhao, S. D. (2020). Estimation and inference for the indirect effect in high-dimensional linear mediation models. Biometrika, 107(3), 573-589. https://doi.org/10.1093/biomet/asaa016

Kim, D., Singh, N., Waldemer-Streyer, R. J., Yoon, M. S., & Chen, J. (2020). Muscle-derived TRAIL negatively regulates myogenic differentiation. Experimental Cell Research, 394(1), [112165]. https://doi.org/10.1016/j.yexcr.2020.112165

Yao, L., Witt, K., Li, H., Rice, J., Salinas, N. R., Martin, R. D., Huerta-Sánchez, E., & Malhi, R. S. (2020). Population genetics of wild Macaca fascicularis with low-coverage shotgun sequencing of museum specimens. American journal of physical anthropology, 173(1), 21-33. https://doi.org/10.1002/ajpa.24099

Bensky, M. K., & Bell, A. M. (2020). Predictors of individual variation in reversal learning performance in three-spined sticklebacks. Animal cognition, 23(5), 925-938. https://doi.org/10.1007/s10071-020-01399-8

Bui, H. X., Hadi, B. A. R., Oliva, R., & Schroeder, N. E. (2020). Beneficial bacterial volatile compounds for the control of root-knot nematode and bacterial leaf blight on rice. Crop Protection, 135, [104792]. https://doi.org/10.1016/j.cropro.2019.04.016

Androwski, R. J., Asad, N., Wood, J. G., Hofer, A., Locke, S., Smith, C. M., Rose, B., & Schroeder, N. E. (2020). Mutually exclusive dendritic arbors in C. elegans neurons share a common architecture and convergent molecular cues. PLoS genetics, 16(9), [1009029]. https://doi.org/10.1371/journal.pgen.1009029

Antonson, N. D., Hauber, M. E., Mommer, B. C., Hoover, J. P., & Schelsky, W. M. (2020). Physiological responses of host parents to rearing an avian brood parasite: An experimental study. Hormones and Behavior, 125, [104812]. https://doi.org/10.1016/j.yhbeh.2020.104812

Zhou, D., Zheng, L., Han, J., & He, J. (2020). A Data-Driven Graph Generative Model for Temporal Interaction Networks. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 401-411). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403082

Dong, X. L., He, X., Kan, A., Li, X., Liang, Y., Ma, J., Xu, Y. E., Zhang, C., Zhao, T., Blanco Saldana, G., Deshpande, S., Michetti Manduca, A., Ren, J., Singh, S. P., Xiao, F., Chang, H. S., Karamanolakis, G., Mao, Y., Wang, Y., ... Han, J. (2020). AutoKnow: Self-Driving Knowledge Collection for Products of Thousands of Types. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 2724-2734). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403323

Meng, Y., Huang, J., & Han, J. (2020). Embedding-Driven Multi-Dimensional Topic Mining and Text Analysis. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 3573-3574). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3406483

Meng, Y., Zhang, Y., Huang, J., Zheng, Y., Zhang, C., & Han, J. (2020). Hierarchical Topic Mining via Joint Spherical Tree and Text Embedding. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 1908-1917). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403242

Yang, C., Pal, A., Zhai, A., Pancha, N., Han, J., Rosenberg, C., & Leskovec, J. (2020). MultiSage: Empowering GCN with Contextualized Multi-Embeddings on Web-Scale Multipartite Networks. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 2434-2443). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403293

Mao, Y., Zhao, T., Kan, A., Zhang, C., Dong, X. L., Faloutsos, C., & Han, J. (2020). Octet: Online Catalog Taxonomy Enrichment with Self-Supervision. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 2247-2257). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403274

Park, C., Yang, C., Zhu, Q., Kim, D., Yu, H., & Han, J. (2020). Unsupervised Differentiable Multi-aspect Network Embedding. In KDD 2020 - Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (pp. 1435-1445). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3394486.3403196

Antonson, N. D., Rubenstein, D. R., Hauber, M. E., & Botero, C. A. (2020). Ecological uncertainty favours the diversification of host use in avian brood parasites. Nature communications, 11(1), [4185]. https://doi.org/10.1038/s41467-020-18038-y

Fleming, S. A., Mudd, A. T., Hauser, J., Yan, J., Metairon, S., Steiner, P., Donovan, S. M., & Dilger, R. N. (2020). Human and Bovine Milk Oligosaccharides Elicit Improved Recognition Memory Concurrent With Alterations in Regional Brain Volumes and Hippocampal mRNA Expression. Frontiers in Neuroscience, 14, [770]. https://doi.org/10.3389/fnins.2020.00770

Keever, M. R., Zhang, P., Bolt, C. R., Antonson, A. M., Rymut, H. E., Caputo, M. P., Houser, A. K., Hernandez, A. G., Southey, B. R., Rund, L. A., Johnson, R. W., & Rodriguez-Zas, S. L. (2020). Lasting and Sex-Dependent Impact of Maternal Immune Activation on Molecular Pathways of the Amygdala. Frontiers in Neuroscience, 14, [774]. https://doi.org/10.3389/fnins.2020.00774

Tkachenko, A. V., Maslov, S., Elbanna, A., Wong, G. N., Weiner, Z. J., & Goldenfeld, N. (2020). Persistent heterogeneity not short-term overdispersion determines herd immunity to COVID-19. Unknown Journal.

Sonam, S., Bangru, S., Perry, K. J., Kalsotra, A., & Henry, J. J. (2020). Single-cell analyses of the corneal epithelium: Unique cell types and gene expression profiles. Unknown Journal. https://doi.org/10.1101/2020.08.06.240036

Mahajan, T., & Dar, R. D. (2020). Internetwork connectivity of molecular networks across species of life. Unknown Journal. https://doi.org/10.1101/2020.08.03.233304

Larsen, R. J., Raine, L. B., Hillman, C. H., Kramer, A. F., Cohen, N. J., & Barbey, A. K. (2020). Body mass and cardiorespiratory fitness are associated with altered brain metabolism. Metabolic Brain Disease, 35(6), 999-1007. https://doi.org/10.1007/s11011-020-00560-z

Moskát, C., Hauber, M. E., Růžičková, J., Marton, A., Bán, M., & Elek, Z. (2020). Female-female aggression and male responses to the two colour morphs of female common cuckoos. Science of Nature, 107(4), [28]. https://doi.org/10.1007/s00114-020-01680-3

Naidu, V. G., Zhang, Y., Lowe, S., Ray, A., Zhu, H., & Li, X. (2020). Temporal progression of Drosophila medulla neuroblasts generates the transcription factor combination to control T1 neuron morphogenesis. Developmental Biology, 464(1), 35-44. https://doi.org/10.1016/j.ydbio.2020.05.005

Wetzel, E., Grijalva, E., Robins, R. W., & Roberts, B. W. (2020). You're still so vain: Changes in narcissism from young adulthood to middle age. Journal of personality and social psychology, 119(2), 479-496. https://doi.org/10.1037/pspp0000266

Dau, H., Xinh, D. T., Kiah, H. M., Luong, T. T., & Milenkovic, O. (2020). Repairing Reed-Solomon codes via subspace polynomials. Unknown Journal.

Zhuang, H., Guo, F., Zhang, C., Liu, L., & Han, J. (2020). Joint Aspect-Sentiment Analysis with Minimal User Guidance. In SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval (pp. 1241-1250). (SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval). Association for Computing Machinery, Inc. https://doi.org/10.1145/3397271.3401179

Zhang, Y., Meng, Y., Huang, J., Xu, F. F., Wang, X., & Han, J. (2020). Minimally Supervised Categorization of Text with Metadata. In SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval (pp. 1231-1240). (SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval). Association for Computing Machinery, Inc. https://doi.org/10.1145/3397271.3401168

Yang, C., Zhang, J., Wang, H., Li, B., & Han, J. (2020). Neural Concept Map Generation for Effective Document Classification with Interpretable Structured Summarization. In SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval (pp. 1629-1632). (SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval). Association for Computing Machinery, Inc. https://doi.org/10.1145/3397271.3401312

Meng, Y., Zhang, Y., Huang, J., Zhang, Y., Zhang, C., & Han, J. (2020). Hierarchical Topic Mining via Joint Spherical Tree and Text Embedding. Unknown Journal.

Westbrook, S. R., Dwyer, M. R., Cortes, L. R., & Gulley, J. M. (2020). Extended access self-administration of methamphetamine is associated with age- and sex-dependent differences in drug taking behavior and recognition memory in rats. Behavioural Brain Research, 390, [112659]. https://doi.org/10.1016/j.bbr.2020.112659

Emad, A., Ray, T., Jensen, T. W., Parat, M., Natrajan, R., Sinha, S., & Ray, P. S. (2020). Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature. Breast Cancer Research, 22(1), [1304]. https://doi.org/10.1186/s13058-020-01304-8

Weiner, Z. J., Wong, G. N., Elbanna, A., Tkachenko, A. V., Maslov, S., & Goldenfeld, N. D. (2020). Projections and early-warning signals of a second wave of the COVID-19 epidemic in Illinois. (medRxiv). Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/2020.07.06.20147868

Weiner, Z. J., Wong, G. N., Elbanna, A., Tkachenko, A. V., Maslov, S., & Goldenfeld, N. (2020). Projections and early-warning signals of a second wave of the COVID-19 epidemic in Illinois. Unknown Journal. https://doi.org/10.1101/2020.07.06.20147868

Jin, D., Yu, Z., He, D., Yang, C., Yu, P. S., & Han, J. (2020). GCN for HIN via Implicit Utilization of Attention and Meta-paths. Unknown Journal.

Avalos, A., Fang, M., Pan, H., Ramirez Lluch, A., Lipka, A. E., Zhao, S. D., Giray, T., Robinson, G. E., Zhang, G., & Hudson, M. E. (2020). Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1922927117

Suarez, A. V., Scharf, H. M., Reeve, H. K., & Hauber, M. E. (2020). Signal detection, acceptance thresholds and the evolution of animal recognition systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1802), 20190464. [20190464]. https://doi.org/10.1098/rstb.2019.0464

Hauber, M. E., Scharf, H. M., Reeve, H. K., & Suarez, A. V. (Eds.) (2020). Signal detection theory in recognition systems: from evolving models to experimental tests. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1802).

Scharf, H. M., Suarez, A. V., Reeve, H. K., & Hauber, M. E. (2020). The evolution of conspecific acceptance threshold models. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1802), 20190475. [20190475]. https://doi.org/10.1098/rstb.2019.0475

Lu, Y., Singh, A., & Dar, R. D. (2020). "A transient heritable memory regulates HIV reactivation from latency" Unknown Journal. https://doi.org/10.1101/2020.07.02.185215

Wang, Q., Li, M., Wang, X., Parulian, N., Han, G., Ma, J., Tu, J., Lin, Y., Zhang, H., Liu, W., Chauhan, A., Guan, Y., Li, B., Li, R., Song, X., Ji, H., Han, J., Chang, S. F., Pustejovsky, J., ... Onyshkevych, B. (2020). COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation. Unknown Journal.

Hays, I. R., Ljubicic, I., & Hauber, M. E. (2020). The shape of avian eggs: Assessment of a novel metric for quantifying eggshell conicality. Auk, 137(3). https://doi.org/10.1093/auk/ukaa021

Pinedo, P., Santos, J. E. P., Chebel, R. C., Galvão, K. N., Schuenemann, G. M., Bicalho, R. C., Gilbert, R. O., Rodriguez-Zas, S. L., Seabury, C. M., Rosa, G., & Thatcher, W. (2020). Associations of reproductive indices with fertility outcomes, milk yield, and survival in Holstein cows. Journal of Dairy Science, 103(7), 6647-6660. https://doi.org/10.3168/jds.2019-17867

Bell, A. M. (2020). Individual variation and the challenge hypothesis. Hormones and Behavior, 123, [104549]. https://doi.org/10.1016/j.yhbeh.2019.06.013

Bleidorn, W., Hill, P. L., Back, M. D., Denissen, J. J. A., Hennecke, M., Hopwood, C. J., Jokela, M., Kandler, C., Lucas, R. E., Luhmann, M., Orth, U., Wagner, J., Wrzus, C., Zimmermann, J., & Roberts, B. (2020). Why stop at two opinions? Reply to McCrae (2020). American Psychologist, 75(5), 731-732. https://doi.org/10.1037/amp0000676

Dong, X. L., He, X., Kan, A., Li, X., Liang, Y., Ma, J., Xu, Y. E., Zhang, C., Zhao, T., Saldana, G. B., Deshpande, S., Manduca, A. M., Ren, J., Singh, S. P., Xiao, F., Chang, H. S., Karamanolakis, G., Mao, Y., Wang, Y., ... Han, J. (2020). AutoKnow: Self-driving knowledge collection for products of thousands of types. Unknown Journal.

Mao, Y., Zhao, T., Kan, A., Zhang, C., Dong, X. L., Faloutsos, C., & Han, J. (2020). Octet: Online Catalog Taxonomy Enrichment with Self-Supervision. Unknown Journal.

Behnke, G. D., Zabaloy, M. C., Riggins, C. W., Rodríguez-Zas, S., Huang, L., & Villamil, M. B. (2020). Acidification in corn monocultures favor fungi, ammonia oxidizing bacteria, and nirK-denitrifier groups. Science of the Total Environment, 720, [137514]. https://doi.org/10.1016/j.scitotenv.2020.137514

Park, C., Han, J., & Yu, H. (2020). Deep multiplex graph infomax: Attentive multiplex network embedding using global information. Knowledge-Based Systems, 197, [105861]. https://doi.org/10.1016/j.knosys.2020.105861

Park, C., Yang, C., Zhu, Q., Kim, D., Yu, H., & Han, J. (2020). Unsupervised Differentiable Multi-aspect Network Embedding. Unknown Journal.

Chen, E., Zielinski, C., Deno, J., Singh, R., Bell, A. M., & Hellmann, J. K. (2020). The specificity of sperm-mediated paternal effects in threespined sticklebacks. Unknown Journal. https://doi.org/10.1101/2020.06.04.135152

Wong, G. N., Weiner, Z. J., Tkachenko, A. V., Elbanna, A., Maslov, S., & Goldenfeld, N. (2020). Modeling COVID-19 dynamics in Illinois under non-pharmaceutical interventions. Unknown Journal.

Xiao, J., Wang, L., Dernoncourt, F., Bui, T., Sun, T., & Han, J. (2020). Open-domain question answering with pre-constructed question spaces. Unknown Journal.

Kaufman, C. D., Liu, S. C., Cvetkovic, C., Lee, C. A., Naseri Kouzehgarani, G., Gillette, R., Bashir, R., & Gillette, M. U. (2020). Emergence of functional neuromuscular junctions in an engineered, multicellular spinal cord-muscle bioactuator. Bioengineering, 4(2), [026104]. https://doi.org/10.1063/1.5121440

Abolins-Abols, M., & Hauber, M. E. (2020). Endocrine regulation of egg rejection in an avian brood parasite host: Endocrine regulation of host behaviour. Biology Letters, 16(6), [20200225]. https://doi.org/10.1098/rsbl.2020.0225rsbl20200225

Mahardja, B., Goodman, A., Goodbla, A., Schreier, A. D., Johnston, C., Fuller, R. C., Contreras, D., & McMartin, L. (2020). Introduction of Bluefin Killifish lucania goodei into the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science, 18(2), [3]. https://doi.org/10.15447/sfews.2020v18iss2art3

Abdelzaher, T., Han, J., Hao, Y., Jing, A., Liu, D., Liu, S., Nguyen, H. H., Nicol, D. M., Shao, H., Wang, T., Yao, S., Zhang, Y., Malik, O., Dipple, S., Flamino, J., Buchanan, F., Cohen, S., Korniss, G., & Szymanski, B. K. (2020). Multiscale online media simulation with SocialCube. Computational and Mathematical Organization Theory, 26(2), 145-174. https://doi.org/10.1007/s10588-019-09303-7

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Gabrys, R., Pattabiraman, S., & Milenkovic, O. (2020). Mass Error-Correction Codes for Polymer-Based Data Storage. Unknown Journal.

Agarwal, A., Milenkovic, O., Pattabiraman, S., & Ribeiro, J. (2020). Group testing with runlength constraints for topological molecular storage. Unknown Journal.

Minuti, A., Bionaz, M., Lopreiato, V., Janovick, N. A., Rodriguez-Zas, S. L., Drackley, J. K., & Loor, J. J. (2020). Prepartum dietary energy intake alters adipose tissue transcriptome profiles during the periparturient period in Holstein dairy cows. Journal of Animal Science and Biotechnology, 11(1), [1]. https://doi.org/10.1186/s40104-019-0409-7

Miao, R., Badger, T. C., Groesch, K., Diaz-Sylvester, P. L., Wilson, T., Ghareeb, A., Martin, J. A., Cregger, M., Welge, M., Bushell, C., Auvil, L., Zhu, R., Brard, L., & Braundmeier-Fleming, A. (2020). Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer. PloS one, 15(1), [e0227707]. https://doi.org/10.1371/journal.pone.0227707

Ishida, Y., Tian, T., Brandt, A. L., Kelly, A. C., Shelton, P., Roca, A. L., Novakofski, J., & Mateus-Pinilla, N. E. (2020). Association of chronic wasting disease susceptibility with prion protein variation in white-tailed deer (Odocoileus virginianus). Prion, 14(1), 214-225. https://doi.org/10.1080/19336896.2020.1805288

Naseri Kouzehgarani, G., Bothwell, M. Y., & Gillette, M. U. (2020). Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons. European Journal of Neuroscience, 51(1), 34-46. https://doi.org/10.1111/ejn.14334

Tanprasertsuk, J., Ferland, G., Johnson, M. A., Poon, L. W., Scott, T. M., Barbey, A. K., Barger, K., Wang, X. D., & Johnson, E. J. (2020). Concentrations of Circulating Phylloquinone, but Not Cerebral Menaquinone-4, Are Positively Correlated with a Wide Range of Cognitive Measures: Exploratory Findings in Centenarians. Journal of Nutrition, 150(1), 82-90. https://doi.org/10.1093/jn/nxz200

Ngumbi, E. N., Hanks, L. M., Suarez, A. V., Millar, J. G., & Berenbaum, M. R. (2020). Factors Associated with Variation in Cuticular Hydrocarbon Profiles in the Navel Orangeworm, Amyelois transitella (Lepidoptera: Pyralidae). Journal of Chemical Ecology, 46(1), 40-47. https://doi.org/10.1007/s10886-019-01129-6

Kim, E. C., Patel, J., Zhang, J., Soh, H., Rhodes, J. S., Tzingounis, A. V., & Chung, H. J. (2020). Heterozygous loss of epilepsy gene KCNQ2 alters social, repetitive and exploratory behaviors. Genes, Brain and Behavior, 19(1), [e12599]. https://doi.org/10.1111/gbb.12599

Rosenfeld, C. S., Hekman, J. P., Johnson, J. L., Lyu, Z., Ortega, M. T., Joshi, T., Mao, J., Vladimirova, A. V., Gulevich, R. G., Kharlamova, A. V., Acland, G. M., Hecht, E. E., Wang, X., Clark, A. G., Trut, L. N., Behura, S. K., & Kukekova, A. V. (2020). Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions. Genes, Brain and Behavior, 19(1), [e12614]. https://doi.org/10.1111/gbb.12614

Shang, J., Liu, L., Gu, X., Ren, X., Ren, T., & Han, J. (2020). Learning named entity tagger using domain-specific dictionary. In E. Riloff, D. Chiang, J. Hockenmaier, & J. Tsujii (Eds.), Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018 (pp. 2054-2064). (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018). Association for Computational Linguistics.

Miraeiz, E., Chaiprom, U., Afsharifar, A., Karegar, A., Drnevich, J. M., & E Hudson, M. (2020). Early transcriptional responses to soybean cyst nematode HG Type 0 show genetic differences among resistant and susceptible soybeans. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 133(1), 87-102. https://doi.org/10.1007/s00122-019-03442-w

Rutledge, S., Carr, D. E., Hauber, M. E., & Hanley, D. (Accepted/In press). Best of a bad job or masters of illusion: Do nest light conditions make the eggs of brood parasitic brown-headed cowbirds (Molothrus ater) more similar to the eggs of their hosts? Ethology. https://doi.org/10.1111/eth.13109

Southey, B. R., Rodriguez-Zas, S. L., Rhodes, J. S., & Sweedler, J. V. (2020). Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies. PloS one, 15(3), [e0228562]. https://doi.org/10.1371/journal.pone.0228562

Park, J., Chaney, E., You, S., Abdelrahman, A. M., Leiting, J. L., Yonkus, J. A., Groves, P. D., Harrington, J. J., Spillman, D. R., Lynch, I. T., Marjanovic, M., Tu, H., Bushell, C. B., Nelson, H., Truty, M. J., & Boppart, S. A. (2020). Characterizing treatment response of pancreatic tumor patient-derived xenografts in mice by Simultaneous Label-Free Autofluorescence Multi-Harmonic (SLAM) microscopy. In Clinical and Translational Biophotonics, Translational 2020 (Optics InfoBase Conference Papers; Vol. Part F178-Translational-2020). OSA - The Optical Society.

Wang, Z., Shang, J., Liu, L., Lu, L., Liu, J., & Han, J. (2020). CrossWeigh: Training named entity tagger from imperfect annotations. In EMNLP-IJCNLP 2019 - 2019 Conference on Empirical Methods in Natural Language Processing and 9th International Joint Conference on Natural Language Processing, Proceedings of the Conference (pp. 5154-5163). (EMNLP-IJCNLP 2019 - 2019 Conference on Empirical Methods in Natural Language Processing and 9th International Joint Conference on Natural Language Processing, Proceedings of the Conference). Association for Computational Linguistics.

Fleming, S. A., Mudd, A. T., Hauser, J., Yan, J., Metairon, S., Steiner, P., Donovan, S. M., & Dilger, R. N. (2020). Dietary Oligofructose Alone or in Combination with 2′-Fucosyllactose Differentially Improves Recognition Memory and Hippocampal mRNA Expression. Nutrients, 12(7), [2131]. https://doi.org/10.3390/nu12072131

Novčič, I., Krunić, S., Stanković, D., & Hauber, M. E. (Accepted/In press). Duration of ‘peeks’ in ducks: how much time do Common Pochards Aythya ferina spend with an eye open while in a sleeping posture? Bird Study. https://doi.org/10.1080/00063657.2020.1808590

Ye, D., Gibson, J. C., & Suarez, A. V. (2020). Effects of Abdominal Rotation on Jump Performance in the Ant Gigantiops destructor (Hymenoptera, Formicidae). Integrative Organismal Biology, 2(1), [obz033]. https://doi.org/10.1093/iob/obz033

Liu, L., Ren, X., Shang, J., Gu, X., Peng, J., & Han, J. (2020). Efficient contextualized representation: Language model pruning for sequence labeling. In E. Riloff, D. Chiang, J. Hockenmaier, & J. Tsujii (Eds.), Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018 (pp. 1215-1225). (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018). Association for Computational Linguistics.

Greenlee, A., Kramer, K., Andrade, F., Bellisle, D., Blanks, R., & Mendenhall, R. (Accepted/In press). Financial Instability in the Earned Income Tax Credit Program: Can Advanced Periodic Payments Ameliorate Systemic Stressors? Urban Affairs Review. https://doi.org/10.1177/1078087420921527

Berdan, E. L., Fuller, R. C., & Kozak, G. M. (Accepted/In press). Genomic landscape of reproductive isolation in Lucania killifish: The role of sex loci and salinity. Journal of Evolutionary Biology. https://doi.org/10.1111/jeb.13725

Yang, C., Xiao, Y., Zhang, Y., Sun, Y., & Han, J. (Accepted/In press). Heterogeneous Network Representation Learning: A Unified Framework with Survey and Benchmark. IEEE Transactions on Knowledge and Data Engineering. https://doi.org/10.1109/TKDE.2020.3045924

Mao, Y., Tian, J., Han, J., & Ren, X. (2020). Hierarchical text classification with reinforced label assignment. In EMNLP-IJCNLP 2019 - 2019 Conference on Empirical Methods in Natural Language Processing and 9th International Joint Conference on Natural Language Processing, Proceedings of the Conference (pp. 445-455). (EMNLP-IJCNLP 2019 - 2019 Conference on Empirical Methods in Natural Language Processing and 9th International Joint Conference on Natural Language Processing, Proceedings of the Conference). Association for Computational Linguistics.

Blatti, C., Emad, A., Berry, M. J., Gatzke, L., Epstein, M., Lanier, D., Rizal, P., Ge, J., Liao, X., Sobh, O., Lambert, M., Post, C. S., Xiao, J., Groves, P., Epstein, A. T., Chen, X., Srinivasan, S., Lehnert, E., Kalari, K. R., ... Sinha, S. (2020). Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform. PLoS biology, 18(1), [e3000583]. https://doi.org/10.1371/journal.pbio.3000583

Park, J., Wang, X., Zhao, J., & Han, H. S. (2020). Nanocrystal Precursor Incorporating Separated Reaction Mechanisms for Nucleation and Growth to Unleash the Potential of Heat-up Synthesis. ACS Nano, 14(9), 11579-11593.

HAUBER, MARK. E. (2020). Natural and Artificial Scents Do Not Increase Egg Rejection Rates of Model Brood Parasitic Eggs by American Robins (Turdus Migratorius). Acta Zoologica Academiae Scientiarum Hungaricae, 66(4), 309-317. https://doi.org/10.17109/AZH.66.4.309.2020

Zhao, S. D., & Nguyen, Y. T. (2020). Nonparametric false discovery rate control for identifying simultaneous signals. Electronic Journal of Statistics, 14(1), 110-142. https://doi.org/10.1214/19-EJS1663

Abolins-Abols, M., & Hauber, M. E. (Accepted/In press). Proximate Predictors of Variation in Egg Rejection Behavior by Hosts of Avian Brood Parasites. Journal of Comparative Psychology. https://doi.org/10.1037/com0000225

Cowell, T. W., Valera, E., Jankelow, A., Park, J., Schrader, A. W., Ding, R., Berger, J., Bashir, R., & Han, H. S. (2020). Rapid, Multiplexed Electrical Detection of Biomolecules using Electrically Distinct Hydrogel Beads. Lab on a Chip, 20, 2274-2283.

Lin, Y., Liu, L., Ji, H., Yu, D., & Han, J. (2020). Reliability-aware dynamic feature composition for name tagging. In ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference (pp. 165-174). (ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference). Association for Computational Linguistics (ACL).

Gabrys, R., Dau, H. S., Colbourn, C. J., & Milenkovic, O. (2020). Set-codes with small intersections and small discrepancies. SIAM Journal on Discrete Mathematics, 34(2), 1148-1171. https://doi.org/10.1137/19M1241106

Rivera-Colón, A. G., Rochette, N. C., & Catchen, J. M. (Accepted/In press). Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data. Molecular ecology resources. https://doi.org/10.1111/1755-0998.13163

Atherton, O. E., Grijalva, E., Roberts, B. W., & Robins, R. W. (Accepted/In press). Stability and Change in Personality Traits and Major Life Goals From College to Midlife. Personality and social psychology bulletin. https://doi.org/10.1177/0146167220949362

Soto, C. J., Napolitano, C. M., & Roberts, B. W. (Accepted/In press). Taking Skills Seriously: Toward an Integrative Model and Agenda for Social, Emotional, and Behavioral Skills. Current Directions in Psychological Science. https://doi.org/10.1177/0963721420978613

Huang, E. W., Bhope, A., Lim, J., Sinha, S., & Emad, A. (2020). Tissue-guided LASSO for prediction of clinical drug response using preclinical samples. PLoS computational biology, 16(1), [e1007607]. https://doi.org/10.1371/journal.pcbi.1007607

Shi, Y., He, X., Zhang, N., Yang, C., & Han, J. (2020). User-Guided Clustering in Heterogeneous Information Networks via Motif-Based Comprehensive Transcription. In U. Brefeld, E. Fromont, A. Hotho, A. Knobbe, M. Maathuis, & C. Robardet (Eds.), Machine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2019, Proceedings (pp. 361-377). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11906 LNAI). Springer. https://doi.org/10.1007/978-3-030-46150-8_22

Hauber, M. E., Taylor, D. M., & Brawn, J. D. (Accepted/In press). Variable or atypical? Comparing unusual songs of the Tufted Titmouse with a citizen-science database. Journal of Ornithology. https://doi.org/10.1007/s10336-020-01839-9

Maclaine, K. D., Stebbings, K. A., Llano, D. A., & Rhodes, J. S. (2020). Voluntary wheel running has no impact on brain and liver mitochondrial DNA copy number or mutation measures in the PolG mouse model of aging. PloS one, 15(3), [e0226860]. https://doi.org/10.1371/journal.pone.0226860

Xie, Y., Li, S., Yang, C., Wong, R. C. W., & Han, J. (2020). When do GNNs work: Understanding and improving neighborhood aggregation. In C. Bessiere (Ed.), Proceedings of the 29th International Joint Conference on Artificial Intelligence, IJCAI 2020 (pp. 1303-1309). (IJCAI International Joint Conference on Artificial Intelligence; Vol. 2021-January). International Joint Conferences on Artificial Intelligence.

Louder, M. I. M., Balakrishnan, C. N., Louder, A. A. N., Driver, R. J., London, S. E., & Hauber, M. E. (2019). An Acoustic Password Enhances Auditory Learning in Juvenile Brood Parasitic Cowbirds. Current Biology, 29(23), 4045-4051.e3. https://doi.org/10.1016/j.cub.2019.09.046

Liu, K., Pan, C., Kuhn, A., Nievergelt, A. P., Fantner, G. E., Milenkovic, O., & Radenovic, A. (2019). Detecting topological variations of DNA at single-molecule level. Nature communications, 10(1), [3]. https://doi.org/10.1038/s41467-018-07924-1

Kandel, M. E., Hu, C., Naseri Kouzehgarani, G., Min, E., Sullivan, K. M., Kong, H., ... Popescu, G. (2019). Epi-illumination gradient light interference microscopy for imaging opaque structures. Nature communications, 10(1), [4691]. https://doi.org/10.1038/s41467-019-12634-3

Withers, S., Armstrong, D., Ward-Smith, T., Parsons, S., & Hauber, M. E. (2019). Improved methods for reducing translocation mortality and obtaining reliable population projections for reintroduction of the New Zealand Rifleman Acanthisitta chloris. Bird Conservation International, 29(4), 542-557. https://doi.org/10.1017/S0959270918000412

Bukhari, S. A., Saul, M. C., James, N., Bensky, M. K., Stein, L. R., Trapp, R., & Bell, A. M. (2019). Neurogenomic insights into paternal care and its relation to territorial aggression. Nature communications, 10(1), [4437]. https://doi.org/10.1038/s41467-019-12212-7

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A., & Rodriguez-Zas, S. L. (2019). Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens. Molecular Neurobiology, 56(12), 7929-7949. https://doi.org/10.1007/s12035-019-01650-5

Taneja, I., Reddy, B., Damhorst, G., Zhao, S. D., Hassan, U., Price, Z., ... Zhu, R. (2019). Publisher Correction: Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis (Scientific Reports, (2017), 7, 1, (10800), 10.1038/s41598-017-09766-1). Scientific reports, 9(1), [17419]. https://doi.org/10.1038/s41598-019-53691-4

Turner, B. O., Santander, T., Paul, E. J., Barbey, A. K., & Miller, M. B. (2019). Reply to: fMRI replicability depends upon sufficient individual-level data. Communications Biology, 2(1), [129]. https://doi.org/10.1038/s42003-019-0379-5

Nagy, J., Hauber, M. E., Hartley, I. R., & Mainwaring, M. C. (2019). Correlated evolution of nest and egg characteristics in birds. Animal Behaviour, 158, 211-225. https://doi.org/10.1016/j.anbehav.2019.10.015

Andrade, F. C. D., Kramer, K. Z., Greenlee, A., Williams, A. N., & Mendenhall, R. (2019). Impact of the Chicago Earned Income Tax Periodic Payment intervention on food security. Preventive Medicine Reports, 16, [100993]. https://doi.org/10.1016/j.pmedr.2019.100993

You, S., Barkalifa, R., Chaney, E. J., Tu, H., Park, J., Sorrells, J. E., ... Boppart, S. A. (2019). Label-free visualization and characterization of extracellular vesicles in breast cancer. Proceedings of the National Academy of Sciences of the United States of America, 116(48), 24012-24018. https://doi.org/10.1073/pnas.1909243116

Mitrano, M., Lee, S., Husain, A. A., Zhu, M., Munoz, G. D. L. P., Sun, S. X. L., ... Abbamonte, P. (2019). Evidence for photoinduced sliding of the charge-order condensate in La1.875Ba0.125CuO4. Physical Review B, 100(20), [205125]. https://doi.org/10.1103/PhysRevB.100.205125

Huang, L., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C., & Villamil, M. B. (2019). Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes. Science of the Total Environment, 691, 562-571. https://doi.org/10.1016/j.scitotenv.2019.07.154

HamediRad, M., Chao, R., Weisberg, S., Lian, J., Sinha, S., & Zhao, H. (2019). Towards a fully automated algorithm driven platform for biosystems design. Nature communications, 10(1), [5150]. https://doi.org/10.1038/s41467-019-13189-z

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., ... Mainzer, L. S. (2019). Recommendations for performance optimizations when using GATK3.8 and GATK4. BMC bioinformatics, 20(1), [557]. https://doi.org/10.1186/s12859-019-3169-7

Moran, R. L., Catchen, J. M., & Fuller, R. C. (Accepted/In press). Genomic resources for darters (Percidae: Etheostominae) provide insight into postzygotic barriers implicated in speciation. Molecular biology and evolution, [msz260]. https://doi.org/10.1093/molbev/msz260

Shi, Y., Shen, J., Li, Y., Zhang, N., He, X., Lou, Z., ... Han, J. (2019). Discovering hypernymy in text-rich heterogeneous information network by exploiting context granularity. In CIKM 2019 - Proceedings of the 28th ACM International Conference on Information and Knowledge Management (pp. 599-608). (International Conference on Information and Knowledge Management, Proceedings). Association for Computing Machinery. https://doi.org/10.1145/3357384.3357866

Yang, C., Gan, L., Wang, Z., Shen, J., Xiao, J., & Han, J. (2019). Query-specific knowledge summarization with entity evolutionary networks. In CIKM 2019 - Proceedings of the 28th ACM International Conference on Information and Knowledge Management (pp. 2121-2124). (International Conference on Information and Knowledge Management, Proceedings). Association for Computing Machinery. https://doi.org/10.1145/3357384.3358068

Park, C., Kim, D., Zhu, Q., Han, J., & Yu, H. (2019). Task-guided pair embedding in heterogeneous network. In CIKM 2019 - Proceedings of the 28th ACM International Conference on Information and Knowledge Management (pp. 489-498). (International Conference on Information and Knowledge Management, Proceedings). Association for Computing Machinery. https://doi.org/10.1145/3357384.3357982

Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., ... Stubbs, L. (2019). A mouse mutation that dysregulates neighboring GALNT17 and AUTS2 genes is associated with phenotypes related to the human AUTS2 syndrome. G3: Genes, Genomes, Genetics, 9(11), 3891-3906. https://doi.org/10.1534/g3.119.400723

Weis, K. E., & Raetzman, L. T. (2019). Genistein inhibits proliferation and induces senescence in neonatal mouse pituitary gland explant cultures. Toxicology, 427, [152306]. https://doi.org/10.1016/j.tox.2019.152306

Louder, M. I. M., Hauber, M. E., Louder, A. N. A., Hoover, J. P., & Schelsky, W. M. (2019). Greater opportunities for sexual selection in male than in female obligate brood parasitic birds. Journal of Evolutionary Biology, 32(11), 1310-1315. https://doi.org/10.1111/jeb.13537

Novak, T. E., Rodriguez-Zas, S. L., Southey, B. R., Starkey, J. D., Stockler, R. M., Alfaro, G. F., & Moisá, S. J. (2019). Jersey steer ruminal papillae histology and nutrigenomics with diet changes. Journal of Animal Physiology and Animal Nutrition, 103(6), 1694-1707. https://doi.org/10.1111/jpn.13189

Rochette, N. C., Rivera-Colón, A. G., & Catchen, J. M. (2019). Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics. Molecular ecology, 28(21), 4737-4754. https://doi.org/10.1111/mec.15253

Hauber, M. E., Dainson, M., Luro, A., Louder, A. A., & Hanley, D. (2019). When are egg-rejection cues perceived? A test using thermochromic eggs in an avian brood parasite host. Animal cognition, 22(6), 1141-1148. https://doi.org/10.1007/s10071-019-01306-w

Chatterjee, P., & Goldenfeld, N. (2019). Three-body interactions drive the transition to polar order in a simple flocking model. Physical Review E, 100(4), [040602]. https://doi.org/10.1103/PhysRevE.100.040602

Rudolph, U., & Moss, S. J. (2019). Modulating anxiety and activity. Science, 366(6462), 185-186. https://doi.org/10.1126/science.aaz3176

Brown, N. M., Mendenhall, R., Black, M., Moer, M. V., Flynn, K., McKee, M., ... Zhai, C. X. (2019). In Search of Zora/When Metadata Isn’t Enough: Rescuing the Experiences of Black Women Through Statistical Modeling. Journal of Library Metadata, 19(3-4), 141-162. https://doi.org/10.1080/19386389.2019.1652967

Román, F. J., Colom, R., Hillman, C. H., Kramer, A. F., Cohen, N. J., & Barbey, A. K. (2019). Cognitive and neural architecture of decision making competence. NeuroImage, 199, 172-183. https://doi.org/10.1016/j.neuroimage.2019.05.076

Louder, M. I. M., Lawson, S., Lynch, K. S., Balakrishnan, C. N., & Hauber, M. E. (2019). Neural mechanisms of auditory species recognition in birds. Biological Reviews, 94(5), 1619-1635. https://doi.org/10.1111/brv.12518

Ballance, W. C., Qin, E. C., Chung, H. J., Gillette, M. L., & Kong, H. J. (2019). Reactive oxygen species-responsive drug delivery systems for the treatment of neurodegenerative diseases. Biomaterials, 217, [119292]. https://doi.org/10.1016/j.biomaterials.2019.119292

Tvedte, E. S., Walden, K. K. O., McElroy, K. E., Werren, J. H., Forbes, A. A., Hood, G. R., ... Robertson, H. M. (2019). Genome of the parasitoid wasp diachasma alloeum, an emerging model for ecological speciation and transitions to asexual reproduction. Genome biology and evolution, 11(10), 2767-2773. https://doi.org/10.1093/gbe/evz205

Sun, R., Zhang, P., Riggins, C. W., Zabaloy, M. C., Rodriguez-Zas, S. L., & Villamil, M. B. (2019). Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities. Agronomy, 9(10), [574]. https://doi.org/10.3390/agronomy9100574

Darolti, I., Wright, A. E., Sandkam, B. A., Morris, J., Bloch, N. I., Farré, M., ... Mank, J. E. (2019). Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers. Proceedings of the National Academy of Sciences of the United States of America, 116(38), 19031-19036. https://doi.org/10.1073/pnas.1905298116

Tseng, S. P., Wetterer, J. K., Suarez, A. V., Lee, C. Y., Yoshimura, T., Shoemaker, D. W., & Yang, C. C. S. (2019). Genetic Diversity and Wolbachia Infection Patterns in a Globally Distributed Invasive Ant. Frontiers in Genetics, 10, [838]. https://doi.org/10.3389/fgene.2019.00838

Harshman, S. W., Pitsch, R. L., Schaeublin, N. M., Smith, Z. K., Strayer, K. E., Phelps, M. S., ... Martin, J. A. (2019). Metabolomic stability of exercise-induced sweat. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 1126-1127, [121763]. https://doi.org/10.1016/j.jchromb.2019.121763

Kramer, K., Andrade, F. C. D., Greenlee, A. J., Mendenhall, R., Bellisle, D., & Lemons Blanks, R. (2019). Periodic Earned Income Tax Credit (EITC) Payment, Financial Stress and Wellbeing: A Longitudinal Study. Journal of Family and Economic Issues, 40(3), 511-523. https://doi.org/10.1007/s10834-019-09618-2

Traniello, I. M., Chen, Z., Bagchi, V. A., & Robinson, G. E. (2019). Valence of social information is encoded in different subpopulations of mushroom body Kenyon cells in the honeybee brain. Proceedings of the Royal Society B: Biological Sciences, 286(1910), [20190901]. https://doi.org/10.1098/rspb.2019.0901

Roca, A. L. (2019). African elephant genetics: enigmas and anomalies. Journal of genetics, 98.

Abolins-Abols, M., Hanley, D., Moskát, C., Grim, T., & Hauber, M. E. (2019). Anti-parasitic egg rejection by great reed warblers (Acrocephalus arundinaceus) tracks differences along an eggshell color gradient. Behavioural Processes, 166, [103902]. https://doi.org/10.1016/j.beproc.2019.103902

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Robertson, H. M., Robertson, E. C. N., Walden, K. K. O., Enders, L. S., & Miller, N. J. (2019). The chemoreceptors and odorant binding proteins of the soybean and pea aphids. Insect Biochemistry and Molecular Biology, 105, 69-78. https://doi.org/10.1016/j.ibmb.2019.01.005

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Bell, A. M., & Hellmann, J. K. (2019). An Integrative Framework for Understanding the Mechanisms and Multigenerational Consequences of Transgenerational Plasticity. Annual Review of Ecology, Evolution, and Systematics, 50, 97-118. https://doi.org/10.1146/annurev-ecolsys-110218-024613

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Hamilton, A. R., Traniello, I. M., Ray, A. M., Caldwell, A. S., Wickline, S. A., & Robinson, G. E. (2019). Division of labor in honey bees is associated with transcriptional regulatory plasticity in the brain. Journal of Experimental Biology, 222(14), [jeb200196]. https://doi.org/10.1242/jeb.200196

Key, M. N., Zwilling, C. E., Talukdar, T., & Barbey, A. K. (2019). Essential Amino Acids, Vitamins, and Minerals Moderate the Relationship between the Right Frontal Pole and Measures of Memory. Molecular Nutrition and Food Research, 63(15), [1801048]. https://doi.org/10.1002/mnfr.201801048

Ngumbi, E. N., Hanks, L. M., Suarez, A. V., Millar, J. G., & Berenbaum, M. R. (Accepted/In press). Factors Associated with Variation in Cuticular Hydrocarbon Profiles in the Navel Orangeworm, Amyelois transitella (Lepidoptera: Pyralidae). Journal of Chemical Ecology. https://doi.org/10.1007/s10886-019-01129-6

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Hammer, R., Paul, E. J., Hillman, C. H., Kramer, A. F., Cohen, N. J., & Barbey, A. K. (2019). Individual differences in analogical reasoning revealed by multivariate task-based functional brain imaging. NeuroImage, 184, 993-1004. https://doi.org/10.1016/j.neuroimage.2018.09.011

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Hanisch, P. E., Drager, K., Yang, W. H., Tubaro, P. L., & Suarez, A. V. (Accepted/In press). Intra- and interspecific variation in trophic ecology of ‘predatory’ ants in the subfamily Ponerinae. Ecological Entomology. https://doi.org/10.1111/een.12817

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Manna, T. J., Moskát, C., Tong, L., Bán, M., Aidala, Z., Low, J., & Hauber, M. E. (Accepted/In press). Multiple Parasitism Reduces Egg Rejection in the Host (Acrocephalus arundinaceus) of a Mimetic Avian Brood Parasite (Cuculus canorus). Journal of Comparative Psychology. https://doi.org/10.1037/com0000166

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Gibson, J. C., Suarez, A. V., Qazi, D., Benson, T. J., Chiavacci, S. J., & Merrill, L. (2019). Prevalence and consequences of ants and other arthropods in active nests of midwestern birds. Canadian journal of zoology, 97(8), 696-704. https://doi.org/10.1139/cjz-2018-0182

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Donelan, S. C., Hellmann, J. K., Bell, A. M., Luttbeg, B., Orrock, J. L., Sheriff, M. J., & Sih, A. (Accepted/In press). Transgenerational Plasticity in Human-Altered Environments. Trends in Ecology and Evolution. https://doi.org/10.1016/j.tree.2019.09.003

Wetzel, E., Grijalva, E., Robins, R. W., & Roberts, B. W. (Accepted/In press). You're Still so Vain: Changes in Narcissism From Young Adulthood to Middle Age. Journal of personality and social psychology. https://doi.org/10.1037/pspp0000266

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