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Research Areas

Microbiome Metabolic Engineering: Publications

Liu, J. J., Zhang, G. C., Kwak, S., Oh, E. J., Yun, E. J., Chomvong, K., ... Jin, Y-S. (2019). Overcoming the thermodynamic equilibrium of an isomerization reaction through oxidoreductive reactions for biotransformation. Nature communications, 10(1), [1356]. https://doi.org/10.1038/s41467-019-09288-6

Kern, S., & Laurent, H. K. (2019). Childhood abuse predicts affective symptoms via HPA reactivity during mother-infant stress. Psychoneuroendocrinology, 107, 19-25. https://doi.org/10.1016/j.psyneuen.2019.04.023

Feng, Y., Ibarra-Sánchez, L. A., Luu, L., Miller, M. J., & Lee, Y. (2019). Co-assembly of nisin and zein in microfluidics for enhanced antilisterial activity in Queso Fresco. LWT, 111, 355-362. https://doi.org/10.1016/j.lwt.2019.05.059

Shin, M., Kim, J. W., Ye, S., Kim, S., Jeong, D., Lee, D. Y., ... Kim, S. R. (2019). Comparative global metabolite profiling of xylose-fermenting Saccharomyces cerevisiae SR8 and Scheffersomyces stipitis. Applied Microbiology and Biotechnology, 103(13), 5435-5446. https://doi.org/10.1007/s00253-019-09829-5

Zhang, Y., & Liu, W-T. (2019). The application of molecular tools to study the drinking water microbiome–Current understanding and future needs. Critical Reviews in Environmental Science and Technology, 49(13), 1188-1235. https://doi.org/10.1080/10643389.2019.1571351

Zhang, L., Holle, M. J., Kim, J. S., Daum, M. A., & Miller, M. J. (2019). Nisin incorporation enhances the inactivation of lactic acid bacteria during the acid wash step of bioethanol production from sugarcane juice. Letters in Applied Microbiology, 69(1), 50-56. https://doi.org/10.1111/lam.13165

Tang, L., Zhong, L., Xue, K., Wang, S., Xu, Z., Lin, Q., ... Wang, Y. (2019). Warming counteracts grazing effects on the functional structure of the soil microbial community in a Tibetan grassland. Soil Biology and Biochemistry, 134, 113-121. https://doi.org/10.1016/j.soilbio.2019.02.018

Gao, H., Mao, Y., Zhao, X., Liu, W-T., Zhang, T., & Wells, G. (2019). Genome-centric metagenomics resolves microbial diversity and prevalent truncated denitrification pathways in a denitrifying PAO-enriched bioprocess. Water Research, 275-287. https://doi.org/10.1016/j.watres.2019.02.020

Robinson, K. N., Rowitz, B. M., Oliphant, U. J., Donovan, S. M., & Teran-Garcia, M. D. L. (2019). Larger omental adipocytes correlate with greater Fetuin-A reduction following sleeve gastrectomy. BMC Obesity, 6(1), [15]. https://doi.org/10.1186/s40608-019-0238-4

Schilling, B., Basisty, N., Christensen, D. G., Sorensen, D., Orr, J. S., Wolfe, A. J., & Rao, C. V. (2019). Global lysine acetylation in Escherichia coli results from growth conditions that favor acetate fermentation. Journal of bacteriology, 201(9), [e00768-18]. https://doi.org/10.1128/JB.00768-18

Barakat, R., Seymore, T., Lin, P. C. P., Park, C. J., & Ko, C. (2019). Prenatal exposure to an environmentally relevant phthalate mixture disrupts testicular steroidogenesis in adult male mice. Environmental Research, 194-201. https://doi.org/10.1016/j.envres.2019.02.017

Narisetty, N., Mukherjee, B., Chen, Y. H., Gonzalez, R., & Meeker, J. D. (2019). Selection of nonlinear interactions by a forward stepwise algorithm: Application to identifying environmental chemical mixtures affecting health outcomes. Statistics in Medicine, 38(9), 1582-1600. https://doi.org/10.1002/sim.8059

Petronikolou, N., Ortega, M. A., Borisova, S. A., Nair, S. K., & Metcalf, W. W. (2019). Molecular Basis of Bacillus subtilis ATCC 6633 Self-Resistance to the Phosphono-oligopeptide Antibiotic Rhizocticin. ACS chemical biology, 14(4), 742-750. https://doi.org/10.1021/acschembio.9b00030

Mei, R., Kim, J., Wilson, F. P., Bocher, B. T. W., & Liu, W-T. (2019). Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process. Microbiome, 7(1), [65]. https://doi.org/10.1186/s40168-019-0682-x

Laurent, H. K. (2019). Challenges in Characterizing the “Mommy Brain”. Parenting, 19(1-2), 94-96. https://doi.org/10.1080/15295192.2019.1556007

Lin, C. Y., Alexander, C., Steelman, A. J., Warzecha, C. M., Cattai de Godoy, M. R., & Swanson, K. S. (2019). Effects of a Saccharomyces cerevisiae fermentation product on fecal characteristics, nutrient digestibility, fecal fermentative end-products, fecal microbial populations, immune function, and diet palatability in adult dogs. Journal of animal science, 97(4), 1586-1599. https://doi.org/10.1093/jas/skz064

Cannavale, C. N., Hassevoort, K. M., Edwards, C. G., Thompson, S. V., Burd, N. A., Holscher, H. D., ... Khan, N. A. (2019). Serum lutein is related to relational memory performance. Nutrients, 11(4), [768]. https://doi.org/10.3390/nu11040768

Devendran, S., Shrestha, R., Alves, J. M. P., Wolf, P. G., Ly, L., Hernandez, A. G., ... Ridlon, J. M. (2019). Clostridium scindens ATCC 35704: Integration of nutritional requirements, the complete genome sequence, and global transcriptional responses to bile acids. Applied and environmental microbiology, 85(7), [e00052-19]. https://doi.org/10.1128/AEM.00052-19

Kim, D. H., Park, H. J., Park, H. S., Lee, J. U., Ko, C., Gye, M. C., & Choi, J. M. (2019). Estrogen receptor α in T cells suppresses follicular helper T cell responses and prevents autoimmunity. Experimental and Molecular Medicine, 51(4), [41]. https://doi.org/10.1038/s12276-019-0237-z

Liu, J. J., Lee, J. W., Yun, E. J., Jung, S. M., Seo, J. H., & Jin, Y-S. (2019). L-Fucose production by engineered Escherichia coli. Biotechnology and bioengineering, 116(4), 904-911. https://doi.org/10.1002/bit.26907

Juneja, A., Zhang, G., Jin, Y-S., & Singh, V. (2019). Bioprocessing and technoeconomic feasibility analysis of simultaneous production of D-psicose and ethanol using engineered yeast strain KAM-2GD. Bioresource Technology, 275, 27-34. https://doi.org/10.1016/j.biortech.2018.12.025

Oba, P. M., Utterback, P. L., Parsons, C. M., Cattai de Godoy, M. R., & Swanson, K. S. (2019). Chemical composition, true nutrient digestibility, and true metabolizable energy of chicken-based ingredients differing by processing method using the precision-fed cecectomized rooster assay. Journal of animal science, 97(3), 998-1009. https://doi.org/10.1093/jas/sky461

Detweiler, K. B., He, F., Mangian, H. F., Davenport, G. M., & Cattai de Godoy, M. R. (2019). Effects of high inclusion of soybean hulls on apparent total tract macronutrient digestibility, fecal quality, and fecal fermentative end-product concentrations in extruded diets of adult dogs. Journal of animal science, 97(3), 1027-1035. https://doi.org/10.1093/jas/skz015

Detweiler, K. B., He, F., Mangian, H. F., Davenport, G. M., & Cattai de Godoy, M. R. (2019). Extruded feline diets formulated with high inclusion of soybean hulls: Effects on apparent total tract macronutrient digestibility, and fecal quality and metabolites. Journal of animal science, 97(3), 1042-1051. https://doi.org/10.1093/jas/skz014

Kim, K., Golubeva, Y. A., Vanderpool, C., & Slauch, J. M. (2019). Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium. Molecular Microbiology, 111(3), 570-587. https://doi.org/10.1111/mmi.14174

Kwak, S., Jo, J. H., Yun, E. J., Jin, Y-S., & Seo, J. H. (2019). Production of biofuels and chemicals from xylose using native and engineered yeast strains. Biotechnology Advances, 37(2), 271-283. https://doi.org/10.1016/j.biotechadv.2018.12.003

Zukher, I., Pavlov, M., Tsibulskaya, D., Kulikovsky, A., Zyubko, T., Bikmetov, D., ... Severinova, K. (2019). Reiterative synthesis by the ribosome and recognition of the N-terminal formyl group by biosynthetic machinery contribute to evolutionary conservation of the length of antibiotic microcin c peptide precursor. mBio, 10(2), [e00768-19]. https://doi.org/10.1128/mBio.00768-19

Park, C. J., Barakat, R., Ulanov, A., Li, Z. L., Lin, P. C., Chiu, K., ... Ko, C. (2019). Sanitary pads and diapers contain higher phthalate contents than those in common commercial plastic products. Reproductive Toxicology, 84, 114-121. https://doi.org/10.1016/j.reprotox.2019.01.005

Oh, E. J., Wei, N., Kwak, S., Kim, H., & Jin, Y-S. (2019). Overexpression of RCK1 improves acetic acid tolerance in Saccharomyces cerevisiae. Journal of Biotechnology, 292, 1-4. https://doi.org/10.1016/j.jbiotec.2018.12.013

Yun, E. J., Liu, J. J., Lee, J. W., Kwak, S., Yu, S., Kim, K. H., & Jin, Y-S. (2019). Biosynthetic Routes for Producing Various Fucosyl-Oligosaccharides. ACS synthetic biology, 8(2), 415-424. https://doi.org/10.1021/acssynbio.8b00436

Hannon, B. A., Thompson, S. V., Edwards, C. G., Skinner, S. K., Niemiro, G. M., Burd, N. A., ... Khan, N. A. (2019). Dietary fiber is independently related to blood triglycerides among adults with overweight and obesity. Current Developments in Nutrition, 3(2), [nzy094].

Kim, J. H., Shin, J. C., & Donovan, S. M. (2019). Effectiveness of Workplace Lactation Interventions on Breastfeeding Outcomes in the United States: An Updated Systematic Review. Journal of Human Lactation, 35(1), 100-113. https://doi.org/10.1177/0890334418765464

Siegel, M. H., Gurung, R. B., & Donovan, S. M. (2019). Safety evaluation of 3′-siallylactose sodium salt supplementation on growth and clinical parameters in neonatal piglets. Regulatory Toxicology and Pharmacology, 101, 57-64. https://doi.org/10.1016/j.yrtph.2018.11.008

Zhang, S., Jagtap, S. S., Deewan, A., & Rao, C. V. (2019). pH selectively regulates citric acid and lipid production in Yarrowia lipolytica W29 during nitrogen-limited growth on glucose. Journal of Biotechnology, 290, 10-15. https://doi.org/10.1016/j.jbiotec.2018.10.012

Bobeica, S. C., Dong, S. H., Huo, L., Mazo, N., McLaughlin, M. I., Jiménez-Osés, G., ... van der Donk, W. A. (2019). Insights into AMS/PCAT transporters from biochemical and structural characterization of a double Glycine motif protease. eLife, 8. https://doi.org/10.7554/eLife.42305

Khan, F., & Laurent, H. K. (2019). Assessing the Impact of Mindfulness and Life Stress on Maternal Well-Being. Mindfulness, 10(1), 26-35. https://doi.org/10.1007/s12671-018-0943-y

Taylor, A. M., Thompson, S. V., Edwards, C. G., Musaad, S. M. A., Khan, N. A., & Holscher, H. D. (2019). Associations among diet, the gastrointestinal microbiota, and negative emotional states in adults. Nutritional Neuroscience. https://doi.org/10.1080/1028415X.2019.1582578

Dong, S. H., Kulikovsky, A., Zukher, I., Estrada, P., Dubiley, S., Severinov, K., & Nair, S. K. (2019). Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by the N-formyl of the peptide precursor. Chemical Science, 10(8), 2391-2395. https://doi.org/10.1039/C8SC03173H

Kaczmarek, J. L., Liu, X., Charron, C. S., Novotny, J. A., Jeffery, E. H., Seifried, H. E., ... Holscher, H. D. (2019). Broccoli consumption affects the human gastrointestinal microbiota. Journal of Nutritional Biochemistry, 63, 27-34. https://doi.org/10.1016/j.jnutbio.2018.09.015

Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H., & Nair, S. K. (2019). Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098. Organic and Biomolecular Chemistry, 17(6), 1506-1518. https://doi.org/10.1039/c8ob02840k

Li, Y., Li, Y., Jin, W., Sharpton, T. J., Mackie, R. I., Cann, I., ... Zhu, W. (2019). Combined genomic, transcriptomic, proteomic, and physiological characterization of the growth of Pecoramyces sp. F1 in Monoculture and Co-culture with a Syntrophic Methanogen. Frontiers in Microbiology, 10(MAR), [435]. https://doi.org/10.3389/fmicb.2019.00435

Hull, N. M., Ling, F., Pinto, A. J., Albertsen, M., Jang, H. G., Hong, P. Y., ... Liu, W-T. (2019). Drinking Water Microbiome Project: Is it Time? Trends in Microbiology. https://doi.org/10.1016/j.tim.2019.03.011

Orr, J. S., Christensen, D. G., Wolfe, A. J., & Rao, C. V. (2019). Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the tricarboxylic acid cycle and the glyoxylate shunt. Journal of bacteriology, 201(2), [e00410-18]. https://doi.org/10.1128/JB.00410-18

Madak-Erdogan, Z., Band, S., Zhao, Y. C., Smith, B. P., Kulkoyluoglu-Cotul, E., Zuo, Q., ... Flaws, J. A. (2019). Free fatty acids rewire cancer metabolism in obesity-associated breast cancer via estrogen receptor and mTOR signaling. Cancer Research, 79(10), 2494-2510. https://doi.org/10.1158/0008-5472.CAN-18-2849

the STRONG Kids Research Team, Donovan, S. M., & Teran-Garcia, M. D. L. (2019). Genetic risk scores demonstrate the cumulative association of single nucleotide polymorphisms in gut microbiome-related genes with obesity phenotypes in preschool age children. Pediatric Obesity, [e12530]. https://doi.org/10.1111/ijpo.12530

Donovan, S. M. (2019). Human Milk Proteins: Composition and Physiological Significance. Nestle Nutrition Institute Workshop Series, 90, 93-101. https://doi.org/10.1159/000490298

Nelson, B. W., Wright, D. B., Allen, N. B., & Laurent, H. K. (2019). Maternal stress and social support prospectively predict infant inflammation. Brain, Behavior, and Immunity. https://doi.org/10.1016/j.bbi.2019.05.010

Dong, S. H., Liu, A., Mahanta, N., Mitchell, D. A., & Nair, S. K. (2019). Mechanistic Basis for Ribosomal Peptide Backbone Modifications. ACS Central Science. https://doi.org/10.1021/acscentsci.9b00124

Duffy, D. M., Ko, C., Jo, M., Brannstrom, M., & Curry, T. E. (2019). Ovulation: Parallels with inflammatory processes. Endocrine reviews, 40(2), 369-416. https://doi.org/10.1210/er.2018-00075

Donovan, S. M., German, J. B., Lönnerdal, B., & Lucas, A. (2019). Preface. Nestle Nutrition Institute Workshop Series, 90, VII-IX. https://doi.org/10.1159/000490600

King, A. M., Vanderpool, C., & Degnan, P. H. (2019). sRNA target prediction organizing tool (SPOT) integrates computational and experimental data to facilitate functional characterization of bacterial small RNAs. mSphere, 4(1), [e00561-18]. https://doi.org/10.1128/mSphere.00561-18

Donovan, S. M. (2019). Summary on Clinical Aspects of Human Milk on Infant Health Outcomes. Nestle Nutrition Institute Workshop Series, 90, 175-178. https://doi.org/10.1159/000490485

Dawson, D. N., Volpe, V. V., & Laurent, H. K. (2019). Synergistic Effects of Psychological Intimate Partner Violence Exposure and Gender Discrimination on Postnatal Mental Health Trajectories. Journal of Interpersonal Violence. https://doi.org/10.1177/0886260519844274

Jones, A. R., Robbs, C. M., Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., ... Khan, N. A. (2018). Retinal morphometric markers of crystallized and fluid intelligence among adults with overweight and obesity. Frontiers in Psychology, 9(DEC), [2650]. https://doi.org/10.3389/fpsyg.2018.02650

Mei, R., Nobu, M. K., Narihiro, T., Yu, J., Sathyagal, A., Willman, E., & Liu, W-T. (2018). Novel Geobacter species and diverse methanogens contribute to enhanced methane production in media-added methanogenic reactors. Water Research, 147, 403-412. https://doi.org/10.1016/j.watres.2018.10.026

Surya, A., Liu, X., & Miller, M. J. (2018). Glutathione Utilization in Lactobacillus fermentum CECT 5716. Journal of Agricultural and Food Chemistry, 66(48), 12651-12656. https://doi.org/10.1021/acs.jafc.8b06136

Klurfeld, D. M., Davis, C. D., Karp, R. W., Allen-Vercoe, E., Chang, E. B., Chassaing, B., ... Lynch, C. J. (2018). Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome. American Journal of Physiology - Endocrinology and Metabolism, 315(6), E1087-E1097. https://doi.org/10.1152/ajpendo.00058.2018

Narihiro, T., Nobu, M. K., Bocher, B. T. W., Mei, R., & Liu, W-T. (2018). Co-occurrence network analysis reveals thermodynamics-driven microbial interactions in methanogenic bioreactors. Environmental Microbiology Reports, 10(6), 673-685. https://doi.org/10.1111/1758-2229.12689

Edwards, C. G., Walk, A. M., Thompson, S. V., Mullen, S. P., Holscher, H. D., & Khan, N. A. (2018). Disordered eating attitudes and behavioral and neuroelectric indices of cognitive flexibility in individuals with overweight and obesity. Nutrients, 10(12), [1902]. https://doi.org/10.3390/nu10121902

Albanna, A., Sim, M., Hoskisson, P. A., Gillespie, C., Rao, C. V., & Aldridge, P. D. (2018). Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences. Scientific Reports, 8(1), [16705]. https://doi.org/10.1038/s41598-018-35005-2

Shen, Y., Huang, P. C., Huang, C., Sun, P., Monroy, G. L., Wu, W., ... Nguyen, T. H. (2018). Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms. npj Biofilms and Microbiomes, 4(1), [15]. https://doi.org/10.1038/s41522-018-0058-1

Hernandez, J., Volland, A., Leyshon, B. J., Juda, M., Ridlon, J. M., Johnson, R. W., & Steelman, A. J. (2018). Effect of imidacloprid ingestion on immune responses to porcine reproductive and respiratory syndrome virus. Scientific Reports, 8(1), [11615]. https://doi.org/10.1038/s41598-018-30093-6

Lane, S., Xu, H., Oh, E. J., Kim, H., Lesmana, A., Jeong, D., ... Kim, S. R. (2018). Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae. Scientific Reports, 8(1), [2613]. https://doi.org/10.1038/s41598-018-20804-4

Donovan, S. M., & Hutkins, R. (2018). Introduction to the Fifth Global Summit on the Health Effects of Yogurt. Nutrition Reviews, 76(1), 1-3. https://doi.org/10.1093/nutrit/nuy054

Hidalgo-Ahumada, C. A. P., Nobu, M. K., Narihiro, T., Tamaki, H., Liu, W-T., Kamagata, Y., ... Sousa, D. Z. (2018). Novel energy conservation strategies and behaviour of Pelotomaculum schinkii driving syntrophic propionate catabolism. Environmental Microbiology, 20(12), 4503-4511. https://doi.org/10.1111/1462-2920.14388

Ammar, E. M., Wang, X., & Rao, C. V. (2018). Regulation of metabolism in Escherichia coli during growth on mixtures of the non-glucose sugars: Arabinose, lactose, and xylose. Scientific Reports, 8(1), [609]. https://doi.org/10.1038/s41598-017-18704-0

Xia, P. F., Li, Q., Tan, L. R., Liu, M. M., Jin, Y-S., & Wang, S. G. (2018). Synthetic Whole-Cell Biodevices for Targeted Degradation of Antibiotics. Scientific Reports, 8(1), [2906]. https://doi.org/10.1038/s41598-018-21350-9

Shiraishi, M., Ishino, S., Heffernan, M., Cann, I., & Ishino, Y. (2018). The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG. Scientific Reports, 8(1), [15791]. https://doi.org/10.1038/s41598-018-34000-x

Neu, L., Bänziger, C., Proctor, C. R., Zhang, Y., Liu, W-T., & Hammes, F. (2018). Ugly ducklings - The dark side of plastic materials in contact with potable water. npj Biofilms and Microbiomes, 4(1), [7]. https://doi.org/10.1038/s41522-018-0050-9

Ozgen, V. C., Kong, W., Blanchard, A. E., Liu, F., & Lu, T. (2018). Spatial interference scale as a determinant of microbial range expansion. Science Advances, 4(11), [eaau0695]. https://doi.org/10.1126/sciadv.aau0695

Liu, J. J., Kwak, S., Pathanibul, P., Lee, J. W., Yu, S., Yun, E. J., ... Jin, Y-S. (2018). Biosynthesis of a Functional Human Milk Oligosaccharide, 2′-Fucosyllactose, and l -Fucose Using Engineered Saccharomyces cerevisiae. ACS synthetic biology, 7(11), 2529-2536. https://doi.org/10.1021/acssynbio.8b00134

Sutter, C., Fiese, B., Lundquist, A., Davis, E. C., McBride, B. A., & Donovan, S. M. (2018). Sources of information and support for breastfeeding: Alignment with centers for disease control and prevention strategies. Breastfeeding Medicine, 13(9), 598-606. https://doi.org/10.1089/bfm.2018.0056

An, R., Guan, C., Ji, M., & Donovan, S. M. (2018). State laws governing competitive foods and beverages sold in schools and childhood obesity among children with special healthcare needs, 2007-2016. American Journal of Health Behavior, 42(6), 124-133. https://doi.org/10.5993/AJHB.42.6.12

Hale, V. L., Jeraldo, P., Chen, J., Mundy, M., Yao, J., Priya, S., ... Chia, N. (2018). Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome medicine, 10(1). https://doi.org/10.1186/s13073-018-0586-6

Donovan, S. M. (2018). 90th Anniversary Commentary: Prebiotics in Infancy for Allergy Prevention: Promising Findings, but No Consensus. Journal of Nutrition, 148(10), 1691-1692. https://doi.org/10.1093/jn/nxy196

Raina, M., King, A., Bianco, C., & Vanderpool, C. (2018). Dual-function RNAs. Microbiology spectrum, 6(5), [RWR-0032-2018]. https://doi.org/10.1128/microbiolspec.RWR-0032-2018

Park, J. H., Yoon, J. J., Kumar, G., Jin, Y-S., & Kim, S. H. (2018). Effects of acclimation and pH on ammonia inhibition for mesophilic methanogenic microflora. Waste Management, 80, 218-223. https://doi.org/10.1016/j.wasman.2018.09.016

Madden, G., Arnold, E. R., Karsten, J., & Ambrose, S. H. (2018). Evaluating competition and conflict among western Ukraine Neolithic farmers with stable isotope analyses of human teeth. Journal of Archaeological Science: Reports, 21, 897-903. https://doi.org/10.1016/j.jasrep.2018.08.031

Zealand, A. M., Mei, R., Papachristodoulou, P., Roskilly, A. P., Liu, W-T., & Graham, D. W. (2018). Microbial community composition and diversity in rice straw digestion bioreactors with and without dairy manure. Applied Microbiology and Biotechnology, 102(19), 8599-8612. https://doi.org/10.1007/s00253-018-9243-7

Niemiro, G. M., Skinner, S. K., Walk, A. M., Edwards, C. G., De Lisio, M., Holscher, H. D., ... Khan, N. A. (2018). Oral Glucose Tolerance is Associated with Neuroelectric Indices of Attention Among Adults with Overweight and Obesity. Obesity, 26(10), 1550-1557. https://doi.org/10.1002/oby.22276

An, L., Cogan, D. P., Navo, C. D., Jiménez-Osés, G., Nair, S. K., & van der Donk, W. A. (2018). Substrate-assisted enzymatic formation of lysinoalanine in duramycin. Nature chemical biology, 14(10), 928-933. https://doi.org/10.1038/s41589-018-0122-4

Marshall, F., Reid, R. E. B., Goldstein, S., Storozum, M., Wreschnig, A., Hu, L., ... Ambrose, S. H. (2018). Ancient herders enriched and restructured African grasslands. Nature, 561(7723), 387-390. https://doi.org/10.1038/s41586-018-0456-9

O'Reilly, M. C., Dong, S. H., Rossi, F. M., Karlen, K. M., Kumar, R. S., Nair, S. K., & Blackwell, H. E. (2018). Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop “Out” Conformation for LasR. Cell chemical biology, 25(9), 1128-1139.e3. https://doi.org/10.1016/j.chembiol.2018.06.007

Kapoor, I., & Nair, S. K. (2018). Structure-Guided Analyses of a Key Enzyme Involved in the Biosynthesis of an Antivitamin. Biochemistry, 57(36), 5282-5288. https://doi.org/10.1021/acs.biochem.8b00576

Algya, K. M., Cross, T. W. L., Leuck, K. N., Kastner, M. E., Baba, T., Lye, L., ... Swanson, K. S. (2018). Apparent total-tract macronutrient digestibility, serum chemistry, urinalysis, and fecal characteristics, metabolites and microbiota of adult dogs fed extruded, mildly cooked, and raw diets. Journal of animal science, 96(9), 3670-3683. https://doi.org/10.1093/jas/sky235

Zhao, X. L., Chen, J. J., SI, S. Y., Chen, L-F., & Wang, Z. (2018). T63 inhibits osteoclast differentiation through regulating MAPKs and Akt signaling pathways. European Journal of Pharmacology, 834, 30-35. https://doi.org/10.1016/j.ejphar.2018.07.009

Khatun, M. A., Hoque, M. A., Zhang, Y., Lu, T., Cui, L., Zhou, N. Y., & Feng, Y. (2018). Bacterial Consortium-Based Sensing System for Detecting Organophosphorus Pesticides. Analytical chemistry, 90(17), 10577-10584. https://doi.org/10.1021/acs.analchem.8b02709

Perry, E., Cross, T. W. L., Francis, J. M., Holscher, H. D., Clark, S. D., & Swanson, K. S. (2018). Effect of Road Transport on the Equine Cecal Microbiota. Journal of Equine Veterinary Science, 68, 12-20. https://doi.org/10.1016/j.jevs.2018.04.004

Alexander, C., Cross, T. W. L., Devendran, S., Neumer, F., Theis, S., Ridlon, J. M., ... Swanson, K. S. (2018). Effects of prebiotic inulin-Type fructans on blood metabolite and hormone concentrations and faecal microbiota and metabolites in overweight dogs. Clay Minerals, 120(6), 711-720. https://doi.org/10.1017/S0007114518001952

Holle, M. J., Ibarra-Sánchez, L. A., Liu, X., Stasiewicz, M. J., & Miller, M. J. (2018). Microbial analysis of commercially available US Queso Fresco. Journal of Dairy Science, 101(9), 7736-7745. https://doi.org/10.3168/jds.2017-14037

D'Alessandro-Gabazza, C. N., Méndez-García, C., Hataji, O., Westergaard, S., Watanabe, F., Yasuma, T., ... Gabazza, E. C. (2018). Identification of halophilic microbes in lung fibrotic tissue by oligotyping. Frontiers in Microbiology, 9(AUG), [1892]. https://doi.org/10.3389/fmicb.2018.01892

Barakat, R., Lin, P. C., Park, C. J., Best, C., Bakry, H. H., Abosalem, M. E., ... Ko, C. (2018). Corrigendum to "Prenatal Exposure to DEHP Induces Neuronal Degeneration and Neurobehavioral Abnormalities in Adult Male Mice". Toxicological sciences : an official journal of the Society of Toxicology, 164(2). https://doi.org/10.1093/toxsci/kfy165

Kong, W., Meldgin, D. R., Collins, J. J., & Lu, T. (2018). Designing microbial consortia with defined social interactions. Nature chemical biology, 14(8), 821-829. https://doi.org/10.1038/s41589-018-0091-7

the STRONG Kids Team (2018). Home feeding environment and picky eating behavior in preschool-aged children: A prospective analysis. Eating Behaviors, 30, 76-82. https://doi.org/10.1016/j.eatbeh.2018.06.003

Cattai de Godoy, M. R. (2018). Pancosma Comparative Gut Physiology Symposium: All About Appetite Regulation: Effects of diet and gonadal steroids on appetite regulation and food intake of companion animals. Journal of animal science, 96(8), 3526-3536. https://doi.org/10.1093/jas/sky146

Tang, Q., Lu, T., & Liu, S. J. (2018). Developing a Synthetic Biology Toolkit for Comamonas testosteroni, an Emerging Cellular Chassis for Bioremediation. ACS synthetic biology, 7(7), 1753-1762. https://doi.org/10.1021/acssynbio.7b00430

Niemiro, G. M., Allen, J. M., Mailing, L. J., Khan, N. A., Holscher, H. D., Woods, J. A., & De Lisio, M. (2018). Effects of endurance exercise training on inflammatory circulating progenitor cell content in lean and obese adults. Journal of Physiology, 596(14), 2811-2822. https://doi.org/10.1113/JP276023

Petronikolou, N., & Nair, S. K. (2018). Structural and Biochemical Studies of a Biocatalyst for the Enzymatic Production of Wax Esters. ACS Catalysis, 8(7), 6334-6344. https://doi.org/10.1021/acscatal.8b00787

Estrada, P., Morita, M., Hao, Y., Schmidt, E. W., & Nair, S. K. (2018). A Single Amino Acid Switch Alters the Isoprene Donor Specificity in Ribosomally Synthesized and Post-Translationally Modified Peptide Prenyltransferases. Journal of the American Chemical Society, 140(26), 8124-8127. https://doi.org/10.1021/jacs.8b05187

He, F., Posselt, D. J., Narisetty, N., Zarzycki, C. M., & Nair, V. N. (2018). Application of multivariate sensitivity analysis techniques to AGCM-simulated tropical cyclones. Monthly Weather Review, 146(7), 2065-2088. https://doi.org/10.1175/MWR-D-17-0265.1

Liu, G., Zhang, Y., van der Mark, E., Magic-Knezev, A., Pinto, A., van den Bogert, B., ... Medema, G. (2018). Assessing the origin of bacteria in tap water and distribution system in an unchlorinated drinking water system by SourceTracker using microbial community fingerprints. Water Research, 138, 86-96. https://doi.org/10.1016/j.watres.2018.03.043

Lipscomb, S. T., Becker, D. R., Laurent, H. K., Neiderhiser, J. M., Shaw, D. S., Natsuaki, M. N., ... Leve, L. D. (2018). Examining morning HPA axis activity as a moderator of hostile, over-reactive parenting on children's skills for success in school. Infant and Child Development, 27(4), [e2083]. https://doi.org/10.1002/icd.2083

Wei, L. J., Kwak, S., Liu, J. J., Lane, S., Hua, Q., Kweon, D. H., & Jin, Y-S. (2018). Improved squalene production through increasing lipid contents in Saccharomyces cerevisiae. Biotechnology and bioengineering, 115(7), 1793-1800. https://doi.org/10.1002/bit.26595

Yu, S., Liu, J. J., Yun, E. J., Kwak, S., Kim, K. H., & Jin, Y-S. (2018). Production of a human milk oligosaccharide 2'-fucosyllactose by metabolically engineered Saccharomyces cerevisiae. Microbial cell factories, 17(1), [101]. https://doi.org/10.1186/s12934-018-0947-2

Karig, D., Michael Martini, K., Lu, T., DeLateur, N. A., Goldenfeld, N. D., & Weiss, R. (2018). Stochastic Turing patterns in a synthetic bacterial population. Proceedings of the National Academy of Sciences of the United States of America, 115(26), 6572-6577. https://doi.org/10.1073/pnas.1720770115

Ongpipattanakul, C., & Nair, S. K. (2018). Biosynthetic Proteases That Catalyze the Macrocyclization of Ribosomally Synthesized Linear Peptides. Biochemistry, 57(23), 3201-3209. https://doi.org/10.1021/acs.biochem.8b00114

Kim, H., Oh, E. J., Lane, S. T., Lee, W. H., Cate, J. H. D., & Jin, Y-S. (2018). Enhanced cellobiose fermentation by engineered Saccharomyces cerevisiae expressing a mutant cellodextrin facilitator and cellobiose phosphorylase. Journal of Biotechnology, 275, 53-59. https://doi.org/10.1016/j.jbiotec.2018.04.008

Wang, Y., Jeffery, E. H., Miller, M. J., Wallig, M. A., & Wu, Y. (2018). Lightly cooked broccoli is as effective as raw broccoli in mitigating dextran sulfate sodium-induced colitis in mice. Nutrients, 10(6), [748]. https://doi.org/10.3390/nu10060748

Ibarra-Sánchez, L. A., Van Tassell, M. L., & Miller, M. J. (2018). Antimicrobial behavior of phage endolysin PlyP100 and its synergy with nisin to control Listeria monocytogenes in Queso Fresco. Food Microbiology, 72, 128-134. https://doi.org/10.1016/j.fm.2017.11.013

Ling, F., Whitaker, R., LeChevallier, M. W., & Liu, W-T. (2018). Drinking water microbiome assembly induced by water stagnation. ISME Journal, 12(6), 1520-1531. https://doi.org/10.1038/s41396-018-0101-5

Berding, K., Holscher, H. D., Parker, A. A., & Donovan, S. M. (2018). Fecal microbiome composition and stability in 4- to 8-year old children is associated with dietary patterns and nutrient intake. Journal of Nutritional Biochemistry, 56, 165-174. https://doi.org/10.1016/j.jnutbio.2018.01.002

Hylemon, P. B., Harris, S. C., & Ridlon, J. M. (2018). Metabolism of hydrogen gases and bile acids in the gut microbiome. FEBS Letters, 592(12), 2070-2082. https://doi.org/10.1002/1873-3468.13064

Holscher, H. D., Guetterman, H. M., Swanson, K. S., An, R., Matthan, N. R., Lichtenstein, A. H., ... Baer, D. J. (2018). Walnut consumption alters the gastrointestinal microbiota, microbially derived secondary bile acids, and health markers in healthy adults: A randomized controlled trial. Journal of Nutrition, 148(6), 861-867. https://doi.org/10.1093/jn/nxy004

Kim, J. S., Daum, M. A., Jin, Y-S., & Miller, M. J. (2018). Yeast derived lysA2 can control bacterial contamination in ethanol fermentation. Viruses, 10(6), [281]. https://doi.org/10.3390/v10060281

Morita, M., Hao, Y., Jokela, J. K., Sardar, D., Lin, Z., Sivonen, K., ... Schmidt, E. W. (2018). Post-Translational Tyrosine Geranylation in Cyanobactin Biosynthesis. Journal of the American Chemical Society, 140(19), 6044-6048. https://doi.org/10.1021/jacs.8b03137

Harris, S. C., Devendran, S., Méndez- García, C., Mythen, S. M., Wright, C. L., Fields, C. J., ... Ridlon, J. M. (Accepted/In press). Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243TGut Microbes, 1-17. https://doi.org/10.1080/19490976.2018.1458180

Tang, Q., Lu, T., & Liu, S. J. (2018). Engineering the bacterium Comamonas testosteroni CNB-1: Plasmid curing and genetic manipulation. Biochemical Engineering Journal, 133, 74-82. https://doi.org/10.1016/j.bej.2018.01.030

Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., ... Jin, Y-S. (2018). Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass. Biotechnology for Biofuels, 11(1), [140]. https://doi.org/10.1186/s13068-018-1135-7

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H., & Jin, Y-S. (2018). A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii. Applied and Environmental Microbiology, 84(10), [e02858-17]. https://doi.org/10.1128/AEM.02858-17

Nishihama, K., Yasuma, T., Yano, Y., D' Alessandro-Gabazza, C. N., Toda, M., Hinneh, J. A., ... Gabazza, E. C. (2018). Anti-apoptotic activity of human matrix metalloproteinase-2 attenuates diabetes mellitus. Metabolism: Clinical and Experimental, 82, 88-99. https://doi.org/10.1016/j.metabol.2018.01.016

Li, Q., Lawrence, C. R., Nowak, R. A., Flaws, J. A., Bagchi, M. K., & Bagchi, I. C. (2018). Bisphenol A and phthalates modulate peritoneal macrophage function in female mice involving SYMD2-H3K36 dimethylation. Endocrinology, 159(5), 2216-2228. https://doi.org/10.1210/en.2017-03000

Luo, J., Han, L., Liu, L., Gao, L., Xue, B., Wang, Y., ... Peng, X. (2018). Catechin supplemented in a FOS diet induces weight loss by altering cecal microbiota and gene expression of colonic epithelial cells. Food and Function, 9(5), 2962-2969. https://doi.org/10.1039/c8fo00035b

Lee-Thacker, S., Choi, Y., Taniuchi, I., Takarada, T., Yoneda, Y., Ko, C., & Jo, M. (2018). Core binding factor b expression in ovarian granulosa cells is essential for female fertility. Endocrinology, 159(5), 2094-2109. https://doi.org/10.1210/en.2018-00011

Laurent, H. K., Goodman, S. H., Stowe, Z. N., Halperin, M., Khan, F., Wright, D., ... Knight, B. (2018). Course of ante-and postnatal depressive symptoms related to mothers' HPA axis regulation. Journal of Abnormal Psychology, 127(4), 404-416. https://doi.org/10.1037/abn0000348

Doden, H., Sallam, L. A., Devendran, S., Ly, L., Doden, G., Daniel, S. L., ... Ridlon, J. M. (2018). Metabolism of oxo-bile acids and characterization of recombinant 12α- hydroxysteroid dehydrogenases from bile acid 7α-dehydroxylating human gut bacteria. Applied and environmental microbiology, 84(10), [e00235-18]. https://doi.org/10.1128/AEM.00235-18

Bailey, M. A., & Holscher, H. D. (2018). Microbiome-mediated effects of the Mediterranean diet on inflammation. Advances in Nutrition, 9(3), 93-206. https://doi.org/10.1093/advances/nmy013

Yun, E. J., Lee, J., Kim, D. H., Kim, J., Kim, S., Jin, Y-S., & Kim, K. H. (2018). Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica. Journal of Biotechnology, 272-273, 7-13. https://doi.org/10.1016/j.jbiotec.2018.02.011

Petronikolou, N., Hollatz, A. J., Schuler, M. A., & Nair, S. K. (2018). Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside. ChemBioChem, 19(8), 784-788. https://doi.org/10.1002/cbic.201700679

Yang, X., Narisetty, N., & He, X. (2018). A New Approach to Censored Quantile Regression Estimation. Journal of Computational and Graphical Statistics, 27(2), 417-425. https://doi.org/10.1080/10618600.2017.1385469

Beloshapka, A. N., Cattai de Godoy, M. R., Carter, R. A., Fascetti, A. J., Yu, Z., McIntosh, B. J., ... Buff, P. R. (2018). Longitudinal changes in blood metabolites, amino acid profile, and oxidative stress markers in american foxhounds fed a nutrient-fortified diet. Journal of animal science, 96(3), 930-940. https://doi.org/10.1093/jas/skx070

the STRONG Kids Team (2018). Child body mass index, genotype and parenting in the prediction of restrictive feeding. Pediatric Obesity, 13(4), 239-246. https://doi.org/10.1111/ijpo.12219

Richardson, K. A., Hannon, P. R., Johnson-Walker, Y. J., Myint, M. S., Flaws, J. A., & Nowak, R. A. (2018). Di (2-ethylhexyl) phthalate (DEHP) alters proliferation and uterine gland numbers in the uteri of adult exposed mice. Reproductive Toxicology, 77, 70-79. https://doi.org/10.1016/j.reprotox.2018.01.006

Reznikov, E. A., Comstock, S. S., Hoeflinger, J. L., Wang, M., Miller, M. J., & Donovan, S. M. (2018). Dietary bovine Lactoferrin reduces Staphylococcus aureus in the tissues and modulates the immune response in piglets systemically infected with S. aureus. Current Developments in Nutrition, 2(4), [nzy001].

Fleming, S. A., Chichlowski, M., Berg, B. M., Donovan, S. M., & Dilger, R. N. (2018). Dietary sialyllactose does not influence measures of recognition memory or diurnal activity in the young pig. Nutrients, 10(4), [395]. https://doi.org/10.3390/nu10040395

Allen, J. M., Mailing, L. J., Niemiro, G. M., Moore, R., Cook, M. D., White, B. A., ... Woods, J. A. (2018). Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans. Medicine and Science in Sports and Exercise, 50(4), 747-757. https://doi.org/10.1249/MSS.0000000000001495

Khan, N. A., Walk, A. M., Edwards, C. G., Jones, A. R., Cannavale, C. N., Thompson, S. V., ... Holscher, H. D. (2018). Macular xanthophylls are related to intellectual ability among adults with overweight and obesity. Nutrients, 10(4), [396]. https://doi.org/10.3390/nu10040396

Laurent, H. K., Wright, D., & Finnegan, M. (2018). Mindfulness-related differences in neural response to own infant negative versus positive emotion contexts. Developmental Cognitive Neuroscience, 30, 70-76. https://doi.org/10.1016/j.dcn.2018.01.002

Mythen, S. M., Devendran, S., Méndez-García, C., Cann, I., & Ridlon, J. M. (2018). Targeted synthesis and characterization of a gene cluster encoding NAD(P)H-dependent 3α-, 3β-, and 12α-hydroxysteroid dehydrogenases from Eggerthella CAG:298, a gut metagenomic sequence. Applied and environmental microbiology, 84(7), [e02475-17]. https://doi.org/10.1128/AEM.02475-17

Mahanta, N., Liu, A., Dong, S., Nair, S. K., & Mitchell, D. A. (2018). Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proceedings of the National Academy of Sciences of the United States of America, 115(12), 3030-3035. https://doi.org/10.1073/pnas.1722324115

Li, Y., Liu, M., Chen, L-F., & Chen, R. (2018). P-TEFb: Finding its ways to release promoter-proximally paused RNA polymerase II. Transcription, 9(2), 88-94. https://doi.org/10.1080/21541264.2017.1281864

Harris, S. C., Devendran, S., Alves, J. M. P., Mythen, S. M., Hylemon, P. B., & Ridlon, J. M. (2018). Identification of a gene encoding a flavoprotein involved in bile acid metabolism by the human gut bacterium Clostridium scindens ATCC 35704. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1863(3), 276-283. https://doi.org/10.1016/j.bbalip.2017.12.001

STRONG Kids Team (2018). Predictors and Outcomes of Mealtime Emotional Climate in Families with Preschoolers. Journal of Pediatric Psychology, 43(2), 195-206. https://doi.org/10.1093/jpepsy/jsx109

Baumgartner, N. W., Walk, A. M., Edwards, C. G., Covello, A. R., Chojnacki, M. R., Reeser, G. E., ... Khan, N. A. (2018). Relationship Between Physical Activity, Adiposity, and Attentional Inhibition. Journal of physical activity & health, 15(3), 191-196. https://doi.org/10.1123/jpah.2017-0181

Blanchard, A. E., Liao, C., & Lu, T. (2018). Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch. Biophysical journal, 114(3), 737-746. https://doi.org/10.1016/j.bpj.2017.12.010

Holscher, H. D., Taylor, A. M., Swanson, K. S., Novotny, J. A., & Baer, D. J. (2018). Almond consumption and processing affects the composition of the gastrointestinal microbiota of healthy adult men and women: A randomized controlled trial. Nutrients, 10(2), [126]. https://doi.org/10.3390/nu10020126

Dong, X., Hu, X., Chen, J., Hu, D., & Chen, L-F. (2018). BRD4 regulates cellular senescence in gastric cancer cells via E2F/miR-106b/p21 axis. Cell Death and Disease, 9(2), [203]. https://doi.org/10.1038/s41419-017-0181-6

Fang, T., Cui, Q., Huang, Y., Dong, P., Wang, H., Liu, W-T., & Ye, Q. (2018). Distribution comparison and risk assessment of free-floating and particle-attached bacterial pathogens in urban recreational water: Implications for water quality management. Science of the Total Environment, 613-614, 428-438. https://doi.org/10.1016/j.scitotenv.2017.09.008

Pallotto, M. R., Cattai de Godoy, M. R., Holscher, H. D., Buff, P. R., & Swanson, K. S. (2018). Effects of weight loss with a moderate-protein, high-fiber diet on body composition, voluntary physical activity, and fecal microbiota of obese cats. American journal of veterinary research, 79(2), 181-190. https://doi.org/10.2460/ajvr.79.2.181

Nelson, B. W., Allen, N. B., & Laurent, H. K. (2018). Infant HPA axis as a potential mechanism linking maternal mental health and infant telomere length. Psychoneuroendocrinology, 88, 38-46. https://doi.org/10.1016/j.psyneuen.2017.11.008

Mackie, R. I., & Cann, I. (2018). Let them eat fruit. Nature Microbiology, 3(2), 127-129. https://doi.org/10.1038/s41564-018-0108-8

Delker, B. C., Bernstein, R. E., & Laurent, H. K. (2018). Out of harm's way: Secure versus insecure-disorganized attachment predicts less adolescent risk taking related to childhood poverty. Development and Psychopathology, 30(1), 283-296. https://doi.org/10.1017/S0954579417000621

Rao, C. V. (2018). Sparsity of Linear Discrete-Time Optimal Control Problems with $l-1$ Objectives. IEEE Transactions on Automatic Control, 63(2), 513-517. [7993042]. https://doi.org/10.1109/TAC.2017.2732286

Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., ... Sohn, J. H. (2018). Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus. Journal of Biotechnology, 266, 27-33. https://doi.org/10.1016/j.jbiotec.2017.12.001

Seo, S. O., Lu, T., Jin, Y-S., & Blaschek, H-P. M. (2018). Development of an oxygen-independent flavin mononucleotide-based fluorescent reporter system in Clostridium beijerinckii and its potential applications. Journal of Biotechnology, 265, 119-126. https://doi.org/10.1016/j.jbiotec.2017.11.003

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y-S., Blaschek, H-P. M., & Wang, Y. (2018). Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example. In Methods in Molecular Biology (pp. 297-325). (Methods in Molecular Biology; Vol. 1772). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7795-6_17

Gan, L., Narisetty, N., & Liang, F. (Accepted/In press). Bayesian Regularization for Graphical Models With Unequal Shrinkage. Journal of the American Statistical Association. https://doi.org/10.1080/01621459.2018.1482755

Naas, A. E., Solden, L. M., Norbeck, A. D., Brewer, H., Hagen, L. H., Heggenes, I. M., ... Pope, P. B. (2018). "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system. Microbiome, 6(1), [44]. https://doi.org/10.1186/s40168-018-0421-8

Jayakody, L. N., Liu, J. J., Yun, E. J., Turner, T. L., Oh, E. J., & Jin, Y-S. (Accepted/In press). Direct conversion of cellulose into ethanol and ethyl-β-d-glucoside via engineered Saccharomyces cerevisiae. Biotechnology and Bioengineering. https://doi.org/10.1002/bit.26799

Sirk, S. (2018). Directed evolution of targeted recombinases for genome engineering. In Methods in Molecular Biology (pp. 89-102). (Methods in Molecular Biology; Vol. 1867). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-8799-3_7

Eckstrum, K. S., Edwards, W., Banerjee, A., Wang, W., Flaws, J. A., Katzenellenbogen, J. A., ... Raetzman, L. T. (2018). Effects of exposure to the endocrine-Disrupting chemical bisphenol a during critical windows of murine pituitary development. Endocrinology, 159(1), 119-131. https://doi.org/10.1210/en.2017-00565

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C., & Jin, Y-S. (2018). Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals. In Advances in Biochemical Engineering/Biotechnology (pp. 175-215). (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/10_2016_22

Siegel, M. H., Wang, M., Pan, X., Li, Q., Richards, J. D., Chichlowski, M., ... Donovan, S. M. (2018). Evaluation of sialyllactose supplementation of a prebiotic-containing formula on growth, intestinal development, and bacterial colonization in the neonatal piglet. Current Developments in Nutrition, 2(11), [nzy067]. https://doi.org/10.1093/cdn/nzy067

Jayakody, L. N., Turner, T. L., Yun, E. J., Kong, I. I., Liu, J. J., & Jin, Y-S. (Accepted/In press). Expression of Gre2p improves tolerance of engineered xylose-fermenting Saccharomyces cerevisiae to glycolaldehyde under xylose metabolism. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-018-9216-x

Walukiewicz, H. E., Ordal, G. W., & Rao, C. V. (2018). In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway. In Methods in Molecular Biology (pp. 95-105). (Methods in Molecular Biology; Vol. 1729). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7577-8_10

Brooks, A. S., Yellen, J. E., Potts, R., Behrensmeyer, A. K., Deino, A. L., Leslie, D. E., ... Clark, J. B. (2018). Long-distance stone transport and pigment use in the earliest Middle Stone Age. Science, 360(6384), 90-94. https://doi.org/10.1126/science.aao2646

Kim, D. H., Kim, I. J., Yun, E. J., Kwak, S., Jin, Y-S., & Kim, K. H. (Accepted/In press). Metabolic engineering of Saccharomyces cerevisiae by using the CRISPR-Cas9 system for enhanced fatty acid production. Process Biochemistry. https://doi.org/10.1016/j.procbio.2018.07.011

Oh, S., Hammes, F., & Liu, W-T. (2018). Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant. Water Research, 128, 278-285. https://doi.org/10.1016/j.watres.2017.10.054

Jagtap, S. S., & Rao, C. V. (Accepted/In press). Microbial conversion of xylose into useful bioproducts. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-018-9294-9

Ongpipattanakul, C., & Nair, S. K. (Accepted/In press). Molecular Basis for Autocatalytic Backbone N-Methylation in RiPP Natural Product Biosynthesis. ACS Chemical Biology. https://doi.org/10.1021/acschembio.8b00668

Kong, I. I., Turner, T. L., Kim, H., Kim, S. R., & Jin, Y-S. (2018). Phenotypic evaluation and characterization of 21 industrial Saccharomyces cerevisiae yeast strains. FEMS yeast research, 18(1). https://doi.org/10.1093/femsyr/foy001

Park, C. J., Kim, H., Jin, J., Barakat, R., Lin, P. C., Choi, J. M., & Ko, C. (2018). Porcine intestinal lymphoid tissues synthesize estradiol. Journal of Veterinary Science, 19(4), 477-482. https://doi.org/10.4142/jvs.2018.19.4.477

Barakat, R., Lin, P. C., Park, C. J., Best, C., Bakry, H. H., Abosalem, M. E., ... Ko, C. (2018). Prenatal exposure to DEHP induces neuronal degeneration and neurobehavioral abnormalities in adult male mice. Toxicological Sciences, 164(2), 439-452. https://doi.org/10.1093/toxsci/kfy103

Jagtap, S. S., & Rao, C. V. (2018). Production of d-arabitol from d-xylose by the oleaginous yeast Rhodosporidium toruloides IFO0880. Applied Microbiology and Biotechnology, 102(1), 143-151. https://doi.org/10.1007/s00253-017-8581-1

Narisetty, N., Shen, J., & He, X. (Accepted/In press). Skinny Gibbs: A Consistent and Scalable Gibbs Sampler for Model Selection. Journal of the American Statistical Association. https://doi.org/10.1080/01621459.2018.1482754

Cogan, D. P., Baraquet, C., Harwood, C. S., & Nair, S. K. (2018). Structural basis of transcriptional regulation by cour, a repressor of coumarate catabolism, in rhodopseudomonas palustris. Journal of Biological Chemistry, 293(30), 11727-11735. https://doi.org/10.1074/jbc.RA118.003561

Gu, W., Dong, S. H., Sarkar, S., Nair, S. K., & Schmidt, E. W. (2018). The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis. In B. S. Moore (Ed.), Methods in Enzymology (pp. 113-163). (Methods in Enzymology; Vol. 604). Academic Press Inc.. https://doi.org/10.1016/bs.mie.2018.03.002

Devendran, S., Mythen, S. M., & Ridlon, J. M. (2018). The desA and desB genes from Clostridium scindens ATCC 35704 encode steroid-17,20-desmolase. Journal of Lipid Research, 59(6), 1005-1014. https://doi.org/10.1194/jlr.M083949

Lee, D. G., Jeon, J. M., Yang, Y. H., Jin, Y-S., & Yoon, J. J. (Accepted/In press). The pH-stat Butyric Acid Feeding Strategy Coupled with Gas-Stripping for n-Butanol Production by Clostridium beijerinckii. Waste and Biomass Valorization. https://doi.org/10.1007/s12649-018-0461-0

Azam, M. S., & Vanderpool, C. (2018). Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism. Nucleic acids research, 46(5), 2585-2599. https://doi.org/10.1093/nar/gkx1286

Lane, S., Dong, J., & Jin, Y-S. (Accepted/In press). Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae. Bioresource Technology. https://doi.org/10.1016/j.biortech.2018.04.013

Dent, S. C., Hutchinson, D. L., Hedman, K. M., Fort, M. A., & Ambrose, S. H. (2018). Purification of dental calculus organic and carbonate biofractions improves correlations with bone stable isotope ratios. 65. Abstract from 2018 Annual Meeting of the American Association of Physical Anthropologists, Austin, United States. https://doi.org/10.1002/ajpa.23489