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Research Areas

Microbiome Metabolic Engineering: Publications

He, K., Donovan, S. M., Ivanov, I. V., Goldsby, J. S., Davidson, L. A., & Chapkin, R. S. (2020). Assessing the Multivariate Relationship Between the Human Infant Intestinal Exfoliated Cell Transcriptome (Exfoliome) and Microbiome in Response to Diet. Microorganisms8(12), 1-21. [2032]. https://doi.org/10.3390/microorganisms8122032

Kelly, V. W., Liang, B. K., & Sirk, S. J. (2020). Living Therapeutics: The Next Frontier of Precision Medicine. ACS synthetic biology9(12), 3184-3201. https://doi.org/10.1021/acssynbio.0c00444

Wylensek, D., Hitch, T. C. A., Riedel, T., Afrizal, A., Kumar, N., Wortmann, E., Liu, T., Devendran, S., Lesker, T. R., Hernández, S. B., Heine, V., Buhl, E. M., M D'Agostino, P., Cumbo, F., Fischöder, T., Wyschkon, M., Looft, T., Parreira, V. R., Abt, B., ... Clavel, T. (2020). A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nature communications11(1), 6389. https://doi.org/10.1038/s41467-020-19929-w

Janzen, A., Bataille, C., Copeland, S. R., Quinn, R. L., Ambrose, S. H., Reed, D., Hamilton, M., Grimes, V., Richards, M. P., le Roux, P., & Roberts, P. (2020). Spatial variation in bioavailable strontium isotope ratios (87Sr/86Sr) in Kenya and northern Tanzania: Implications for ecology, paleoanthropology, and archaeology. Palaeogeography, Palaeoclimatology, Palaeoecology560, [109957]. https://doi.org/10.1016/j.palaeo.2020.109957

Resendiz-Moctezuma, C., Rezac, S. D., Miller, M. J., & Stasiewicz, M. J. (2020). Enabling cost-effective screening for antimicrobials against Listeria monocytogenes in ham. Journal of Food Protectionhttps://doi.org/10.4315/JFP-20-435

Kim, J., Mei, R., Wilson, F. P., Yuan, H., Bocher, B. T. W., & Liu, W. T. (2020). Ecogenomics-Based Mass Balance Model Reveals the Effects of Fermentation Conditions on Microbial Activity. Frontiers in Microbiology11, [595036]. https://doi.org/10.3389/fmicb.2020.595036

Lee-Thacker, S., Jeon, H., Choi, Y., Taniuchi, I., Takarada, T., Yoneda, Y., Ko, C. M., & Jo, M. (2020). Core Binding Factors are essential for ovulation, luteinization, and female fertility in mice. Scientific reports10(1), [9921]. https://doi.org/10.1038/s41598-020-64257-0

Zipkin, A. M., Ambrose, S. H., Lundstrom, C. C., Bartov, G., Dwyer, A., & Taylor, A. H. (2020). Correction to: Red Earth, Green Glass, and Compositional Data: A New Procedure for Solid-State Elemental Characterization, Source Discrimination, and Provenience Analysis of Ochres (Journal of Archaeological Method and Theory, (2020), 27, 4, (930-970), 10.1007/s10816-020-09448-9). Journal of Archaeological Method and Theory27(4), 971. https://doi.org/10.1007/s10816-020-09452-z

Shin, J., Park, M., Kim, C., Kim, H., Park, Y., Ban, C., Yoon, J. W., Shin, C. S., Lee, J. W., Jin, Y. S., Park, Y. C., Min, W. K., & Kweon, D. H. (2020). Development of fluorescent Escherichia coli for a whole-cell sensor of 2ʹ-fucosyllactose. Scientific reports10(1), [10514]. https://doi.org/10.1038/s41598-020-67359-x

Barakat, R., Lin, P. C., Park, C. J., Zeineldin, M., Zhou, S., Rattan, S., Brehm, E., Flaws, J. A., & Ko, C. M. J. (2020). Germline-dependent transmission of male reproductive traits induced by an endocrine disruptor, di-2-ethylhexyl phthalate, in future generations. Scientific reports10(1), [5705]. https://doi.org/10.1038/s41598-020-62584-w

Sickle, J. J., Ni, C., Shen, D., Wang, Z., Jin, M., & Lu, T. (2020). Integrative Circuit-Host Modeling of a Genetic Switch in Varying Environments. Scientific reports10(1), [8383]. https://doi.org/10.1038/s41598-020-64921-5

Liu, F., Mao, J., Kong, W., Hua, Q., Feng, Y., Bashir, R., & Lu, T. (2020). Interaction variability shapes succession of synthetic microbial ecosystems. Nature communications11(1), [309]. https://doi.org/10.1038/s41467-019-13986-6

Zipkin, A. M., Ambrose, S. H., Lundstrom, C. C., Bartov, G., Dwyer, A., & Taylor, A. H. (2020). Red Earth, Green Glass, and Compositional Data: A New Procedure for Solid-State Elemental Characterization, Source Discrimination, and Provenience Analysis of Ochres. Journal of Archaeological Method and Theory27(4), 930-970. https://doi.org/10.1007/s10816-020-09448-9

Taylor, A. M., Thompson, S. V., Edwards, C. G., Musaad, S. M. A., Khan, N. A., & Holscher, H. D. (2020). Associations among diet, the gastrointestinal microbiota, and negative emotional states in adults. Nutritional Neuroscience23(12), 983-992. https://doi.org/10.1080/1028415X.2019.1582578

Heindel, J. J., Belcher, S., Flaws, J. A., Prins, G. S., Ho, S. M., Mao, J., Patisaul, H. B., Ricke, W., Rosenfeld, C. S., Soto, A. M., vom Saal, F. S., & Zoeller, R. T. (2020). Data integration, analysis, and interpretation of eight academic CLARITY-BPA studies. Reproductive Toxicology98, 29-60. https://doi.org/10.1016/j.reprotox.2020.05.014

Martínez-Ramos, A. R., Ibarra-Sánchez, L. A., Amaya-Llano, S. L., & Miller, M. J. (2020). Evaluation of combinations of nisin, lauric arginate, and ε-polylysine to control Listeria monocytogenes in queso fresco. Journal of Dairy Science103(12), 11152-11162. https://doi.org/10.3168/jds.2020-19001

Rezac, S. D., Resendiz-Moctezuma, C., Boler, D. D., Stasiewicz, M. J., & Miller, M. J. (2020). Non-Destructive Luminescence-Based Screening Tool for Listeria monocytogenes Growth on Ham. Foods9(11), [1700]. https://doi.org/10.3390/foods9111700

Sun, L., & Jin, Y-S. (2020). Xylose Assimilation for the Efficient Production of Biofuels and Chemicals by Engineered Saccharomyces cerevisiae. Biotechnology Journalhttps://doi.org/10.1002/biot.202000142

Lin, C. Y., Carroll, M. Q., Miller, M. J., Rabot, R., & Swanson, K. S. (2020). Supplementation of Yeast Cell Wall Fraction Tends to Improve Intestinal Health in Adult Dogs Undergoing an Abrupt Diet Transition. Frontiers in Veterinary Science7, [597939]. https://doi.org/10.3389/fvets.2020.597939

Patel, M. D., Donovan, S. M., & Lee, S-Y. (2020). Considering Nature and Nurture in the Etiology and Prevention of Picky Eating: A Narrative Review. Nutrients12(11), [3409]. https://doi.org/10.3390/nu12113409

Oba, P. M., Holscher, H. D., Mathai, R. A., Kim, J., & Swanson, K. S. (2020). Diet influences the oral microbiota of infants during the first six months of life. Nutrients12(11), 1-17. [3400]. https://doi.org/10.3390/nu12113400

Chiu, K., Bashir, S. T., Nowak, R. A., Mei, W., & Flaws, J. A. (2020). Subacute exposure to di-isononyl phthalate alters the morphology, endocrine function, and immune system in the colon of adult female mice. Scientific reports10(1), 18788. https://doi.org/10.1038/s41598-020-75882-0

Peng, H., Zhang, Y., Wang, R., Liu, J., & Liu, W. T. (2020). Assessing the contribution of biofilm to bacterial growth during stagnation in shower hoses. Water Science and Technology: Water Supply20(7), 2564-2576. https://doi.org/10.2166/ws.2020.161

Hatcher, K. M., Smith, R. L., Chiang, C., Li, Z., Flaws, J. A., & Mahoney, M. M. (2020). Association of phthalate exposure and endogenous hormones with self-reported sleep disruptions: results from the Midlife Women's Health Study. Menopause27(11), 1251-1264. https://doi.org/10.1097/GME.0000000000001614

Traughber, Z. T., He, F., Hoke, J. M., Davenport, G. M., & de Godoy, M. R. C. (2020). Chemical composition and in vitro fermentation characteristics of ancient grains using canine fecal inoculum. Journal of animal science98(11). https://doi.org/10.1093/jas/skaa326

Sun, L., Atkinson, C. A., Lee, Y. G., & Jin, Y. S. (2020). High-level β-carotene production from xylose by engineered Saccharomyces cerevisiae without overexpression of a truncated HMG1 (tHMG1). Biotechnology and bioengineering117(11), 3522-3532. https://doi.org/10.1002/bit.27508

Swanson, K. S., Gibson, G. R., Hutkins, R., Reimer, R. A., Reid, G., Verbeke, K., Scott, K. P., Holscher, H. D., Azad, M. B., Delzenne, N. M., & Sanders, M. E. (2020). The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics. Nature Reviews Gastroenterology and Hepatology17(11), 687-701. https://doi.org/10.1038/s41575-020-0344-2

Lee, J. W., Kwak, S., Liu, J. J., Yu, S., Yun, E. J., Kim, D. H., Liu, C., Kim, K. H., & Jin, Y. S. (2020). Enhanced 2'-fucosyllactose production by engineered Saccharomyces cerevisiae using xylose as a co-substrate. Metabolic Engineering62, 322-329. https://doi.org/10.1016/j.ymben.2020.10.003

Mei, R., Nobu, M. K., Narihiro, T., & Liu, W. T. (2020). Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters. Frontiers in Microbiology11, [593006]. https://doi.org/10.3389/fmicb.2020.593006

Hannon, B. A., Edwards, C. G., Thompson, S. V., Burke, S. K., Burd, N. A., Holscher, H. D., Teran-Garcia, M., & Khan, N. A. (2020). Genetic Variants in Lipid Metabolism Pathways Interact with Diet to Influence Blood Lipid Concentrations in Adults with Overweight and Obesity. Lifestyle Genomicshttps://doi.org/10.1159/000507021

Sbrilli, M. D., Duncan, L. G., & Laurent, H. K. (2020). Effects of prenatal mindfulness-based childbirth education on child-bearers’ trajectories of distress: a randomized control trial. BMC Pregnancy and Childbirth20(1), [623]. https://doi.org/10.1186/s12884-020-03318-8

Jiao, X., Gonsioroski, A., Flaws, J. A., & Qiao, H. (2020). Iodoacetic acid disrupts mouse oocyte maturation by inducing oxidative stress and spindle abnormalities. Environmental Pollution268(Pt A), 115601. https://doi.org/10.1016/j.envpol.2020.115601

Donadelli, R. A., de Godoy, M. R. C., & Barry, K. A. (2020). Companion Animal Nutrition Symposia 2020 - A Review. Journal of animal science98(10). https://doi.org/10.1093/jas/skaa312

Smith, B. N., Hannas, M., Orso, C., Martins, S. M. M. K., Wang, M., Donovan, S. M., & Dilger, R. N. (2020). Dietary osteopontin-enriched algal protein as nutritional support in weaned pigs infected with F18-fimbriated enterotoxigenic Escherichia coli. Journal of animal science98(10). https://doi.org/10.1093/jas/skaa314

Lackey, K. A., Pace, R. M., Williams, J. E., Bode, L., Donovan, S. M., Järvinen, K. M., Seppo, A. E., Raiten, D. J., Meehan, C. L., McGuire, M. A., & McGuire, M. K. (2020). SARS-CoV-2 and Human Milk: What Is the Evidence? What is the evidence? Maternal and Child Nutrition16(4), [e13032]. https://doi.org/10.1101/2020.04.07.20056812https://doi.org/10.1111/mcn.13032

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Molecular and cellular biology40(19), [35620]. https://doi.org/10.1128/MCB.00356-20

Kuanyshev, N., Rao, C. V., Dien, B., & Jin, Y. S. (2020). Domesticating a food spoilage yeast into an organic acid‐tolerant metabolic engineering host: Lactic acid production by engineered Zygosaccharomyces bailiiBiotechnology and bioengineeringhttps://doi.org/10.1002/bit.27576

Shinn, L. M., Li, Y., Mansharamani, A., Auvil, L. S., Welge, M. E., Bushell, C., Khan, N. A., Charron, C. S., Novotny, J. A., Baer, D. J., Zhu, R., & Holscher, H. D. (2020). Fecal Bacteria as Biomarkers for Predicting Food Intake in Healthy Adults. The Journal of nutritionhttps://doi.org/10.1093/jn/nxaa285

Joachim, E., Barakat, R., Lew, B., Kim, K. K., Ko, C. M., & Choi, H. (2020). Single intranasal administration of 17β-estradiol loaded gelatin nanoparticles confers neuroprotection in the post-ischemic brain. Nanomedicine: Nanotechnology, Biology, and Medicine29, [102246]. https://doi.org/10.1016/j.nano.2020.102246

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The asm journals committee values the contributions of black microbiologists. Clinical Microbiology Reviews33(4), 1-4. [e00203-20]. https://doi.org/10.1128/CMR.00203-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Infection and immunity88(10), [e00445]. https://doi.org/10.1128/IAI.00445-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Antimicrobial Agents and Chemotherapy64(10), [e01540-20]. https://doi.org/10.1128/AAC.01540-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Journal of Clinical Microbiology58(10). https://doi.org/10.1128/JCM.01855-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM Journals Committee Values the Contributions of Black Microbiologists. Journal of bacteriology202(19), [e00420-20]. https://doi.org/10.1128/JB.00420-20

Tohidifar, P., Bodhankar, G. A., Pei, S., Cassidy, C. K., Walukiewicz, H. E., Ordal, G. W., Stansfeld, P. J., & Rao, C. V. (2020). The Unconventional Cytoplasmic Sensing Mechanism for Ethanol Chemotaxis in Bacillus subtilis. mBio11(5), 1-20. [e02177-20]. https://doi.org/10.1128/mBio.02177-20

Schloss, P. D., Junior, M., Alvani, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Journal of virology94(20), [e01473-20]. https://doi.org/10.1128/JVI.01473-20

Shi, X., Monaco, M. H., Donovan, S. M., & Lee, Y. (Accepted/In press). Encapsulation of tributyrin by gamma-cyclodextrin: Complexation, spray drying, and in vitro fermentation. Journal of food sciencehttps://doi.org/10.1111/1750-3841.15440

Montalbán-López, M., Scott, T. A., Ramesh, S., Rahman, I. R., van Heel, A. J., Viel, J. H., Bandarian, V., Dittmann, E., Genilloud, O., Goto, Y., Grande Burgos, M. J., Hill, C., Kim, S., Koehnke, J., Latham, J. A., Link, A. J., Martínez, B., Nair, S. K., Nicolet, Y., ... van der Donk, W. A. (Accepted/In press). New developments in RiPP discovery, enzymology and engineering. Natural Product Reportshttps://doi.org/10.1039/d0np00027b

Campbell, D. E., Ly, L. K., Ridlon, J. M., Hsiao, A., Whitaker, R. J., & Degnan, P. H. (2020). Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe. Cell Reports32(11), [108142]. https://doi.org/10.1016/j.celrep.2020.108142

Metras, B. N., Holle, M. J., Parker, V. J., Miller, M. J., & Swanson, K. S. (2020). Assessment of Commercial Companion Animal Kefir Products for Label Accuracy of Microbial Composition and Quantity. Journal of animal science98(9), [skaa301]. https://doi.org/10.1093/jas/skaa301

Oliveira, B. G., Mendes, L. W., Smyth, E. M., Tsai, S. M., Feigl, B. J., & Mackie, R. I. (2020). Assessment of microbial diversity associated with CH4 emission from sugarcane vinasse storage and transportation systems. Journal of Environmental Management269, [110748]. https://doi.org/10.1016/j.jenvman.2020.110748

Carroll, M. Q., Oba, P. M., Sieja, K. M., Alexander, C., Lye, L., de Godoy, M. R. C., He, F., Somrak, A. J., Keating, S. C. J., Sage, A. M., & Swanson, K. S. (2020). Effects of novel dental chews on oral health outcomes and halitosis in adult dogs. Journal of animal science98(9). https://doi.org/10.1093/jas/skaa274

Wen, Y., Rattan, S., Flaws, J. A., & Irudayaraj, J. (2020). Multi and transgenerational epigenetic effects of di-(2-ethylhexyl) phthalate (DEHP) in liver. Toxicology and Applied Pharmacology402, [115123]. https://doi.org/10.1016/j.taap.2020.115123

Schloss, P. D., Junior, M., Alvani, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., Mcadam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Applied and environmental microbiology86(18), [e01733]. https://doi.org/10.1128/AEM.01733-20

Azam, M. S., & Vanderpool, C. K. (2020). Translation inhibition from a distance: The small RNA SgrS silences a ribosomal protein S1-dependent enhancer. Molecular Microbiology114(3), 391-408. https://doi.org/10.1111/mmi.14514

Wolf, P. G., Gaskins, H. R., Ridlon, J. M., Freels, S., Hamm, A., Goldberg, S., Petrilli, P., Schering, T., Vergis, S., Gomez-Perez, S., Yazici, C., Braunschweig, C., Mutlu, E., & Tussing-Humphreys, L. (2020). Effects of taurocholic acid metabolism by gut bacteria: A controlled feeding trial in adult African American subjects at elevated risk for colorectal cancer. Contemporary Clinical Trials Communications19, [100611]. https://doi.org/10.1016/j.conctc.2020.100611

Huang, X., Fan, Y., Lu, T., Kang, J., Pang, X., Han, B., & Chen, J. (2020). Composition and Metabolic Functions of the Microbiome in Fermented Grain during Light-Flavor Baijiu Fermentation. Microorganisms8(9), 1-15. [1281]. https://doi.org/10.3390/microorganisms8091281

Eve, A. A., Liu, X., Wang, Y., Miller, M. J., Jeffery, E. H., & Madak-Erdogan, Z. (2020). Biomarkers of Broccoli Consumption: Implications for Glutathione Metabolism and Liver Health. Nutrients12(9), [2514]. https://doi.org/10.3390/nu12092514

Fleming, S. A., Mudd, A. T., Hauser, J., Yan, J., Metairon, S., Steiner, P., Donovan, S. M., & Dilger, R. N. (2020). Human and Bovine Milk Oligosaccharides Elicit Improved Recognition Memory Concurrent With Alterations in Regional Brain Volumes and Hippocampal mRNA Expression. Frontiers in Neuroscience14, [770]. https://doi.org/10.3389/fnins.2020.00770

Ridlon, J. M. (2020). Conceptualizing the vertebrate sterolbiome. Applied and environmental microbiology86(16), 1-22. https://doi.org/10.1128/AEM.00641-20

Narisetty, N. N. (2020). Discussion. International Statistical Review88(2), 330-334. https://doi.org/10.1111/insr.12392

Chen, Y., Sheppard, D., Dong, X., Hu, X., Chen, M., Chen, R., Chakrabarti, J., Zavros, Y., Peek, R. M., & Chen, L. F. (2020). H. pylori infection confers resistance to apoptosis via Brd4-dependent BIRC3 eRNA synthesis. Cell Death and Disease11(8), [667]. https://doi.org/10.1038/s41419-020-02894-z

Chiu, K., Warner, G., Nowak, R. A., Flaws, J. A., & Mei, W. (2020). The Impact of Environmental Chemicals on the Gut Microbiome. Toxicological Sciences176(2), 253-284. [kfaa065]. https://doi.org/10.1093/toxsci/kfaa065

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. mSystems5(4), [e00678-20]. https://doi.org/10.1128/mSystems.00678-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozikv, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Microbiology Resource Announcements9(32), [e00833-20]. https://doi.org/10.1128/MRA.00833-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM Journals Committee Values the Contributions of Black Microbiologists. mSphere5(4). https://doi.org/10.1128/mSphere.00719-20

Bogart, J. W., Kramer, N. J., Turlik, A., Bleich, R. M., Catlin, D. S., Schroeder, F. C., Nair, S. K., Williamson, R. T., Houk, K. N., Bowers, A. A., & Bowers, A. A. (2020). Interception of the Bycroft-Gowland Intermediate in the Enzymatic Macrocyclization of Thiopeptides. Journal of the American Chemical Society142(30), 13170-13179. https://doi.org/10.1021/jacs.0c05639

Nobu, M. K., Narihiro, T., Mei, R., Kamagata, Y., Lee, P. K. H., Lee, P. H., McInerney, M. J., & Liu, W. T. (2020). Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses. Microbiome8(1), [111]. https://doi.org/10.1186/s40168-020-00885-y

Rodriguez, D. A., Lee, S. A., de Godoy, M. R. C., & Stein, H. H. (2020). Extrusion of soybean hulls does not increase digestibility of amino acids or concentrations of digestible and metabolizable energy when fed to growing pigs. Translational Animal Science4(3), 1-9. https://doi.org/10.1093/tas/txaa169

Shah, F. A., Mahmood, Q., Iqbal, A., & Mackie, R. I. (2020). Inhibition of biomethane production under antibiotics in poultry litter. Arabian Journal of Geosciences13(14), [614]. https://doi.org/10.1007/s12517-020-05668-1

Lam, T. Y. C., Mei, R., Wu, Z., Lee, P. K. H., Liu, W. T., & Lee, P. H. (2020). Superior resolution characterisation of microbial diversity in anaerobic digesters using full-length 16S rRNA gene amplicon sequencing. Water Research178, [115815]. https://doi.org/10.1016/j.watres.2020.115815

Nelson, B. W., Bernstein, R., Allen, N. B., & Laurent, H. K. (2020). The quality of early infant-caregiver relational attachment and longitudinal changes in infant inflammation across 6 months. Developmental psychobiology62(5), 674-683. https://doi.org/10.1002/dev.21940

Wang, X., Koirala, S., Aldridge, P. D., & Rao, C. V. (2020). Two tandem mechanisms control bimodal expression of the flagellar genes in salmonella enterica. Journal of bacteriology202(13), [e00787-19]. https://doi.org/10.1128/JB.00787-19

Reilly, L. M., von Schaumburg, P. C., Hoke, J. M., Davenport, G. M., Utterback, P. L., Parsons, C. M., & de Godoy, M. R. C. (2020). Use of precision-fed cecectomized rooster assay and digestible indispensable amino acid scores to characterize plant- And yeast-concentrated proteins for inclusion in canine and feline diets. Translational Animal Science4(3), [txaa133]. https://doi.org/10.1093/tas/txaa133

Cheng, M. H., Sun, L., Jin, Y. S., Dien, B., & Singh, V. (2020). Production of xylose enriched hydrolysate from bioenergy sorghum and its conversion to β-carotene using an engineered Saccharomyces cerevisiae. Bioresource Technology308, [123275]. https://doi.org/10.1016/j.biortech.2020.123275

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Microbiology and Molecular Biology Reviews84(3), [e00122-20]. https://doi.org/10.1128/MMBR.00122-20

Schloss, P. D., Junior, M., Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The ASM journals committee values the contributions of black microbiologists. Journal of Microbiology and Biology Education21(2). https://doi.org/10.1128/JMBE.V21I2.2227

Dong, S. H., Nhu-Lam, M., Nagarajan, R., & Nair, S. K. (2020). Structure-Guided Biochemical Analysis of Quorum Signal Synthase Specificities. ACS chemical biology15(6), 1497-1504. https://doi.org/10.1021/acschembio.0c00142

Zhang, L., Zhang, L., Zhang, L., Chichlowski, M., Chichlowski, M., Gross, G., Gross, G., Holle, M. J., Lbarra-Sánchez, L. A., Wang, S., & Miller, M. J. (2020). Milk Fat Globule Membrane Protects Lactobacillus rhamnosus GG from Bile Stress by Regulating Exopolysaccharide Production and Biofilm Formation. Journal of Agricultural and Food Chemistry68(24), 6646-6655. https://doi.org/10.1021/acs.jafc.0c02267

Tohidifar, P., Bodhankar, G. A., Pei, S., Cassidy, C. K., Walukiewicz, H., Ordal, G. W., Stansfeld, P. J., & Rao, C. V. (2020). The unconventional cytoplasmic sensing mechanism for ethanol chemotaxis in Bacillus subtilis. Unknown Journalhttps://doi.org/10.1101/2020.06.04.135640

Hannon, B. A., Edwards, C. G., Thompson, S. V., Reeser, G. E., Burd, N. A., Holscher, H. D., Teran-Garcia, M., & Khan, N. A. (2020). Single Nucleotide Polymorphisms Related to Lipoprotein Metabolism Are Associated with Blood Lipid Changes following Regular Avocado Intake in a Randomized Control Trial among Adults with Overweight and Obesity. Journal of Nutrition150(6), 1379-1387. https://doi.org/10.1093/jn/nxaa054

Kapoor, I., Olivares, P., & Nair, S. K. (2020). Biochemical basis for the regulation of biosynthesis of antiparasitics by bacterial hormones. eLife9, 1-33. [e57824]. https://doi.org/10.7554/eLife.57824

Zhang, M. L., Li, M., Sheng, Y., Tan, F., Chen, L., Cann, I., Cann, I., Cann, I., Cann, I., & Du, Z. Y. (2020). Citrobacter species increase energy harvest by modulating intestinal microbiota in fish: Nondominant species play important functions. mSystems5(3), [e00303-20]. https://doi.org/10.1128/mSystems.00303-20

Liu, G., Zhang, Y., Liu, X., Hammes, F., Liu, W. T., Medema, G., Wessels, P., & Van Der Meer, W. (2020). 360-Degree Distribution of Biofilm Quantity and Community in an Operational Unchlorinated Drinking Water Distribution Pipe. Environmental Science and Technology54(9), 5619-5628. https://doi.org/10.1021/acs.est.9b06603

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A., & Baldeón, M. E. (2020). Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador. Gut Microbes11(3), 453-464. https://doi.org/10.1080/19490976.2019.1662260

Ridlon, J. M., Devendran, S., Alves, J. M., Doden, H., Wolf, P. G., Pereira, G. V., Ly, L., Volland, A., Takei, H., Nittono, H., Murai, T., Kurosawa, T., Chlipala, G. E., Green, S. J., Hernandez, A. G., Fields, C. J., Wright, C. L., Kakiyama, G., Cann, I., ... Gaskins, H. R. (2020). The ‘in vivo lifestyle’ of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice. Gut Microbes11(3), 381-404. https://doi.org/10.1080/19490976.2019.1618173

Donovan, S. M. (2020). Evolution of the gut microbiome in infancy within an ecological context. Current opinion in clinical nutrition and metabolic care23(3), 223-227. https://doi.org/10.1097/MCO.0000000000000650

Ly, L. K., Rowles, J. L., Paul, H. M., Alves, J. M. P., Yemm, C., Wolf, P. M., Devendran, S., Hudson, M. E., Morris, D. J., Erdman, J. W., & Ridlon, J. M. (2020). Bacterial steroid-17,20-desmolase is a taxonomically rare enzymatic pathway that converts prednisone to 1,4-androstanediene-3,11,17-trione, a metabolite that causes proliferation of prostate cancer cells. Journal of Steroid Biochemistry and Molecular Biology199, [105567]. https://doi.org/10.1016/j.jsbmb.2019.105567

Janzen, A., Balasse, M., & Ambrose, S. H. (2020). Early pastoral mobility and seasonality in Kenya assessed through stable isotope analysis. Journal of Archaeological Science117, [105099]. https://doi.org/10.1016/j.jas.2020.105099

Nelson, B. W., Wright, D. B., Allen, N. B., & Laurent, H. K. (2020). Maternal stress and social support prospectively predict infant inflammation. Brain, Behavior, and Immunity86, 14-21. https://doi.org/10.1016/j.bbi.2019.05.010

Park, C. J., Lin, P. C., Zhou, S., Barakat, R., Bashir, S. T., Choi, J. M., Cacioppo, J. A., Oakley, O. R., Duffy, D. M., Lydon, J. P., & Ko, C. M. J. (2020). Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation. Cell Reports31(2), [107496]. https://doi.org/10.1016/j.celrep.2020.03.060

Roux, S., Paul, B. G., Bagby, S. C., Allen, M. A., Attwood, G., Cavicchioli, R., Chistoserdova, L., Hallam, S. J., Hernandez, M. E., Hess, M., Liu, W. T., O’Malley, M. A., Peng, X., Rich, V. I., Saleska, S., & Eloe-Fadrosh, E. A. (2020). Ecology and molecular targets of hypermutation in the global microbiome. Unknown Journalhttps://doi.org/10.1101/2020.04.01.020958

Monaco, M. H., Kim, D. H., Gurung, R. B., & Donovan, S. M. (2020). Evaluation of 6'-sialyllactose sodium salt supplementation to formula on growth and clinical parameters in neonatal piglets. Nutrients12(4), [1030]. https://doi.org/10.3390/nu12041030

Holscher, H. D. (2020). Gut Microbes: Nuts about Fatty Acids. Journal of Nutrition150(4), 652-653. https://doi.org/10.1093/jn/nxaa045

Mei, R., Nobu, M. K., & Liu, W. T. (2020). Identifying anaerobic amino acids degraders through the comparison of short-term and long-term enrichments. Environmental Microbiology Reports12(2), 173-184. https://doi.org/10.1111/1758-2229.12821

Holscher, H. D. (2020). Diet Affects the Gastrointestinal Microbiota and Health. Journal of the Academy of Nutrition and Dietetics120(4), 495-499. https://doi.org/10.1016/j.jand.2019.12.016

Hernández-Barrueta, T., Martínez-Bustos, F., Castaño-Tostado, E., Lee, Y., Miller, M. J., & Amaya-Llano, S. L. (2020). Encapsulation of probiotics in whey protein isolate and modified huauzontle's starch: An approach to avoid fermentation and stabilize polyphenol compounds in a ready-to-drink probiotic green tea. LWT124, [109131]. https://doi.org/10.1016/j.lwt.2020.109131

Li, K., Liszka, M., Zhou, C., Brehm, E., Flaws, J. A., & Nowak, R. A. (2020). Prenatal exposure to a phthalate mixture leads to multigenerational and transgenerational effects on uterine morphology and function in mice. Reproductive Toxicology93, 178-190. https://doi.org/10.1016/j.reprotox.2020.02.012

Boss, J., Rix, A., Chen, Y. H., Narisetty, N. N., Wu, Z., Ferguson, K. K., McElrath, T. F., Meeker, J. D., & Mukherjee, B. (2020). A hierarchical integrative group lasso (higlasso) framework for analyzing environmental mixtures. Unknown Journal.

D’alessandro-gabazza, C. N., Kobayashi, T., Yasuma, T., Toda, M., Kim, H., Fujimoto, H., Hataji, O., Takeshita, A., Nishihama, K., Okano, T., Okano, Y., Nishii, Y., Tomaru, A., Fujiwara, K., D’alessandro, V. F., Abdel-hamid, A. M., Ren, Y., Pereira, G. V., Wright, C. L., ... Gabazza, E. C. (2020). A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis. Nature Communications11(1), [1539]. https://doi.org/10.1038/s41467-020-15344-3

Hu, X., & Chen, L. F. (2020). Pinning Down the Transcription: A Role for Peptidyl-Prolyl cis-trans Isomerase Pin1 in Gene Expression. Frontiers in Cell and Developmental Biology8, [179]. https://doi.org/10.3389/fcell.2020.00179

Kim, D. H., Liu, J. J., Lee, J. W., Pelton, J. G., Yun, E. J., Yu, S., Jin, Y. S., & Kim, K. H. (2020). Biological upgrading of 3,6-anhydro-l-galactose from agarose to a new platform chemical. Green Chemistry22(5), 1776-1785. https://doi.org/10.1039/c9gc04265b

Taylor, A. M., & Holscher, H. D. (2020). A review of dietary and microbial connections to depression, anxiety, and stress. Nutritional Neuroscience23(3), 237-250. https://doi.org/10.1080/1028415X.2018.1493808

Sun, H., Mei, R., Zhang, X. X., Ren, H., Liu, W. T., & Ye, L. (2020). Bacterial enrichment in highly-selective acetate-fed bioreactors and its application in rapid biofilm formation. Water Research170, [115359]. https://doi.org/10.1016/j.watres.2019.115359

Phungviwatnikul, T., Valentine, H., de Godoy, M. R. C., & Swanson, K. S. (2020). Effects of diet on body weight, body composition, metabolic status, and physical activity levels of adult female dogs after spay surgery. Journal of animal science98(3). https://doi.org/10.1093/jas/skaa057

Davis, E. C., Dinsmoor, A. M., Wang, M., & Donovan, S. M. (2020). Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions. Digestive Diseases and Sciences65(3), 706-722. https://doi.org/10.1007/s10620-020-06092-x

Lee, D. G., Jeon, J. M., Yang, Y. H., Jin, Y. S., & Yoon, J. J. (2020). The pH-stat Butyric Acid Feeding Strategy Coupled with Gas-Stripping for n-Butanol Production by Clostridium beijerinckii. Waste and Biomass Valorization11(3), 1077-1084. https://doi.org/10.1007/s12649-018-0461-0

Cann, I., Pereira, G. V., Abdel-Hamid, M. M., Kim, H., Wefers, D., Kayang, B. B., Kanai, T., Sato, T., Bernardi, R. C., Atomi, H., & Mackie, R. I. (2020). Thermophilic degradation of hemicellulose, a critical feedstock in the production of bioenergy and other value-added products. Applied and environmental microbiology86(7), [2296]. https://doi.org/10.1128/AEM.02296-19

Ibarra-Sánchez, L. A., El-Haddad, N., Mahmoud, D., Miller, M. J., & Karam, L. (2020). Invited review: Advances in nisin use for preservation of dairy products. Journal of Dairy Science103(3), 2041-2052. https://doi.org/10.3168/jds.2019-17498

Bhatia, S. K., Jagtap, S. S., Bedekar, A. A., Bhatia, R. K., Patel, A. K., Pant, D., Rajesh Banu, J., Rao, C. V., Kim, Y. G., & Yang, Y. H. (2020). Recent developments in pretreatment technologies on lignocellulosic biomass: Effect of key parameters, technological improvements, and challenges. Bioresource Technology300, [122724]. https://doi.org/10.1016/j.biortech.2019.122724

Xavier, J. B., Young, V. B., Skufca, J., Ginty, F., Testerman, T., Pearson, A. T., Macklin, P., Mitchell, A., Shmulevich, I., Xie, L., Caporaso, J. G., Crandall, K. A., Simone, N. L., Godoy-Vitorino, F., Griffin, T. J., Whiteson, K. L., Gustafson, H. H., Slade, D. J., Schmidt, T. M., ... Wargo, J. A. (2020). The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View. Trends in Cancer6(3), 192-204. https://doi.org/10.1016/j.trecan.2020.01.004

Liou, C. S., Sirk, S. J., Diaz, C. A. C., Klein, A. P., Fischer, C. R., Higginbottom, S. K., Erez, A., Donia, M. S., Sonnenburg, J. L., & Sattely, E. S. (2020). A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont. Cell180(4), 717-728.e19. https://doi.org/10.1016/j.cell.2020.01.023

Ye, L., Mei, R., Liu, W. T., Ren, H., & Zhang, X. X. (2020). Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes. Microbiome8(1), [16]. https://doi.org/10.1186/s40168-020-0794-3

Oh, E. J., & Jin, Y. S. (2020). Engineering of Saccharomyces cerevisiae for efficient fermentation of cellulose. FEMS yeast research20(1), [foz089]. https://doi.org/10.1093/femsyr/foz089

Kwak, S., Yun, E. J., Lane, S., Oh, E. J., Kim, K. H., & Jin, Y. S. (2020). Redirection of the Glycolytic Flux Enhances Isoprenoid Production in Saccharomyces cerevisiae. Biotechnology Journal15(2), [1900173]. https://doi.org/10.1002/biot.201900173

Tohidifar, P., Plutz, M. J., Ordal, G. W., & Rao, C. V. (2020). The mechanism of bidirectional pH taxis in Bacillus subtilis. Journal of bacteriology202(4), [e00491-19]. https://doi.org/10.1128/JB.00491-19

Lane, S., Zhang, Y., Yun, E. J., Ziolkowski, L., Zhang, G., Jin, Y. S., & Avalos, J. L. (2020). Xylose assimilation enhances the production of isobutanol in engineered Saccharomyces cerevisiae. Biotechnology and bioengineering117(2), 372-381. https://doi.org/10.1002/bit.27202

Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., Erdman, J. W., Burd, N. A., Holscher, H. D., & Khan, N. A. (2020). Effects of 12-week avocado consumption on cognitive function among adults with overweight and obesity. International Journal of Psychophysiology148, 13-24. https://doi.org/10.1016/j.ijpsycho.2019.12.006

Nayak, D. D., Liu, A., Agrawal, N., Rodriguez-Carerro, R., Dong, S. H., Mitchell, D. A., Nair, S. K., & Metcalf, W. W. (2020). Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans. PLoS biology18(2), [e3000507]. https://doi.org/10.1371/journal.pbio.3000507

Hagen, L. H., Brooke, C. G., Shaw, C., Norbeck, A. D., Piao, H., Arntzen, M., Brewer, H., Copeland, A., Isern, N., Shukla, A., Roux, S., Lombard, V., Henrissat, B., O’Malley, M. A., Grigoriev, I. V., Tringe, S., Mackie, R., Pasa-Tolic, L., Pope, P. B., & Hess, M. (2020). Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. Unknown Journalhttps://doi.org/10.1101/2020.01.16.907998

Browning, M. H. E. M., Mimnaugh, K. J., van Riper, C. J., Laurent, H. K., & LaValle, S. M. (2020). Can Simulated Nature Support Mental Health? Comparing Short, Single-Doses of 360-Degree Nature Videos in Virtual Reality With the Outdoors. Frontiers in Psychology10, [2667]. https://doi.org/10.3389/fpsyg.2019.02667

Huo, L., Zhao, X., Acedo, J. Z., Estrada, P., Nair, S. K., & van der Donk, W. A. (2020). Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae. ChemBioChem21(1-2), 190-199. https://doi.org/10.1002/cbic.201900483

Yang, X. D., Li, W., Zhang, S., Wu, D., Jiang, X., Tan, R., Niu, X., Wang, Q., Wu, X., Liu, Z., Chen, L. F., Qin, J., & Su, B. (2020). PLK4 deubiquitination by Spata2-CYLD suppresses NEK7-mediated NLRP3 inflammasome activation at the centrosome. EMBO Journal39(2), [e102201]. https://doi.org/10.15252/embj.2019102201

Berding, K., & Donovan, S. M. (2020). Dietary Patterns Impact Temporal Dynamics of Fecal Microbiota Composition in Children With Autism Spectrum Disorder. Frontiers in Nutrition6, [193]. https://doi.org/10.3389/fnut.2019.00193

Nair, S. K., & Jez, J. M. (2020). Natural product biosynthesis: What’s next? An introduction to the JBC Reviews Thematic Series. Journal of Biological Chemistry295(2), 335-336. https://doi.org/10.1074/jbc.REV119.011586

Do, S., Koutsos, L., Utterback, P. L., Parsons, C. M., De Godoy, M. R. C., & Swanson, K. S. (2020). Nutrient and AA digestibility of black soldier fly larvae differing in age using the precision-fed cecectomized rooster assay. Journal of animal science98(1), [skz363]. https://doi.org/10.1093/jas/skz363

Chen, L., Ling, F., Bakker, G., Liu, W. T., Medema, G., van der Meer, W., & Liu, G. (2020). Assessing the transition effects in a drinking water distribution system caused by changing supply water quality: an indirect approach by characterizing suspended solids. Water Research168, [115159]. https://doi.org/10.1016/j.watres.2019.115159

Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H., & Rao, C. V. (2020). Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10. Applied Microbiology and Biotechnology104(1), 161-171. https://doi.org/10.1007/s00253-019-10243-0

Zhou, J., Lian, J., & Rao, C. V. (Accepted/In press). Metabolic engineering of Parageobacillus thermoglucosidasius for the efficient production of (2R, 3R)-butanediol. Applied Microbiology and Biotechnologyhttps://doi.org/10.1007/s00253-020-10553-8

Van Tassell, M. L., Ibarra-Sánchez, L. A., Takhar, S. R., Amaya-Llano, S. L., & Miller, M. J. (2020). Corrigendum to “Use of a miniature laboratory fresh cheese model for investigating antimicrobial activities” (J. Dairy Sci. 98:8515–8524)(S002203021500733X)(10.3168/jds.2015-9967). Journal of Dairy Science103(1), 1048. https://doi.org/10.3168/jds.2020-103-1-1048

Cintora, P., & Laurent, H. K. (Accepted/In press). Childhood Trauma Exposure Exacerbates the Impact of Concurrent Intimate Partner Violence Exposure on Women's Posttraumatic Symptoms. Journal of Traumatic Stress33(6), 1102-1110. https://doi.org/10.1002/jts.22545

Yang, X., & Narisetty, N. N. (2020). Consistent group selection with bayesian high dimensional modeling. Bayesian Analysis15(3), 909-935. https://doi.org/10.1214/19-BA1178

Fleming, S. A., Mudd, A. T., Hauser, J., Yan, J., Metairon, S., Steiner, P., Donovan, S. M., & Dilger, R. N. (2020). Dietary Oligofructose Alone or in Combination with 2′-Fucosyllactose Differentially Improves Recognition Memory and Hippocampal mRNA Expression. Nutrients12(7), [2131]. https://doi.org/10.3390/nu12072131

Harris, T., Li, B., Steiger, N. J., Smerdon, J. E., Narisetty, N., & Tucker, J. D. (Accepted/In press). Evaluating Proxy Influence in Assimilated Paleoclimate Reconstructions—Testing the Exchangeability of Two Ensembles of Spatial Processes. Journal of the American Statistical Associationhttps://doi.org/10.1080/01621459.2020.1799810

Volpe, V. V., Dawson, D. N., & Laurent, H. K. (Accepted/In press). Gender discrimination and women’s HPA activation to psychosocial stress during the postnatal period. Journal of Health Psychologyhttps://doi.org/10.1177/1359105320953470

Jeong, D., Oh, E. J., Ko, J. K., Nam, J-O., Park, H-S., Jin, Y-S., Lee, E. J., & Kim, S. R. (2020). Metabolic engineering considerations for the heterologous expression of xylose-catabolic pathways in Saccharomyces cerevisiaePloS one15(7), e0236294. https://doi.org/10.1371/journal.pone.0236294

Han, H. M., Kim, I. J., Yun, E. J., Lee, J. W., Cho, Y., Jin, Y. S., & Kim, K. H. (Accepted/In press). Overproduction of Exopolysaccharide Colanic Acid by Escherichia coli by Strain Engineering and Media Optimization. Applied Biochemistry and Biotechnologyhttps://doi.org/10.1007/s12010-020-03409-4

Brehm, E., Zhou, C., Gao, L., & Flaws, J. A. (Accepted/In press). Prenatal exposure to an environmentally relevant phthalate mixture accelerates biomarkers of reproductive aging in a multiple and transgenerational manner in female mice. Reproductive Toxicologyhttps://doi.org/10.1016/j.reprotox.2020.10.009

Hagen, L. H., Brooke, C. G., Shaw, C. A., Norbeck, A. D., Piao, H., Arntzen, M., Olson, H. M., Copeland, A., Isern, N., Shukla, A., Roux, S., Lombard, V., Henrissat, B., O’Malley, M. A., Grigoriev, I. V., Tringe, S. G., Mackie, R. I., Pasa-Tolic, L., Pope, P. B., & Hess, M. (Accepted/In press). Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. ISME Journalhttps://doi.org/10.1038/s41396-020-00769-x

Jagtap, S. S., Bedekar, A. A., & Rao, C. V. (2020). Quorum Sensing in Yeast. In S. S. Dhiman (Ed.), ACS Symposium Series (pp. 235-250). (ACS Symposium Series; Vol. 1374). American Chemical Society. https://doi.org/10.1021/bk-2020-1374.ch013

Dong, Y., Chen, S., Ambrose, S. H., Underhill, A., Ling, X., Gao, M., Li, Z., Luan, F., & Jin, G. (Accepted/In press). Social and environmental factors influencing dietary choices among Dawenkou culture sites, Late Neolithic China. Holocenehttps://doi.org/10.1177/0959683620970273

Cogan, D. P., Ly, J., & Nair, S. K. (Accepted/In press). Structural Basis for Enzymatic Off-Loading of Hybrid Polyketides by Dieckmann Condensation. ACS chemical biologyhttps://doi.org/10.1021/acschembio.0c00579

Schloss, P. D., Melissa, Alvania, R., Arias, C. A., Baumler, A., Casadevall, A., Detweiler, C., Drake, H., Gilbert, J., Imperiale, M. J., Lovett, S., Maloy, S., McAdam, A. J., Newton, I. L. G., Sadowsky, M. J., Sandri-Goldin, R. M., Silhavy, T. J., Tontonoz, P., Young, J. A. H., ... Kozik, A. J. (2020). The asm journals committee values the contributions of black microbiologists. mBio11(4), 1-4. [e01998-20]. https://doi.org/10.1128/mBio.01998-20

Ragunathan, P. T., & Vanderpool, C. K. (2019). Cryptic-prophage-encoded small protein dicb protects Escherichia coli from phage infection by inhibiting inner membrane receptor proteins. Journal of bacteriology, 201(23), [e00475-19]. https://doi.org/10.1128/JB.00475-19

Yamamoto, K., Hackley, K. C., Kelly, W. R., Panno, S. V., Sekiguchi, Y., Sanford, R. A., ... Tamaki, H. (2019). Diversity and geochemical community assembly processes of the living rare biosphere in a sand-and-gravel aquifer ecosystem in the Midwestern United States. Scientific reports, 9(1), [13484]. https://doi.org/10.1038/s41598-019-49996-z

Wang, M., Radlowski, E. C., Li, M., Monaco, M. H., & Donovan, S. M. (2019). Feeding Mode, but Not Prebiotics, Affects Colonic Microbiota Composition and Volatile Fatty Acid Concentrations in Sow-Reared, Formula-Fed, and Combination-Fed Piglets. The Journal of nutrition, 149(12), 2156-2163. https://doi.org/10.1093/jn/nxz183

Liu, J. J., Zhang, G. C., Kwak, S., Oh, E. J., Yun, E. J., Chomvong, K., ... Jin, Y-S. (2019). Overcoming the thermodynamic equilibrium of an isomerization reaction through oxidoreductive reactions for biotransformation. Nature communications, 10(1), [1356]. https://doi.org/10.1038/s41467-019-09288-6

Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., ... Maranas, C. D. (2019). A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data. Metabolic Engineering Communications, 9, [e00101]. https://doi.org/10.1016/j.mec.2019.e00101

Cheng, H., Cheng, D., Mao, J., Lu, T., & Hong, P. Y. (2019). Identification and characterization of core sludge and biofilm microbiota in anaerobic membrane bioreactors. Environment International, 133, [105165]. https://doi.org/10.1016/j.envint.2019.105165

Chekan, J. R., Ongpipattanakul, C., & Nair, S. K. (2019). Steric complementarity directs sequence promiscuous leader binding in RiPP biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 116(48), 24049-24055. https://doi.org/10.1073/pnas.1908364116

Mei, R., & Liu, W. T. (2019). Quantifying the contribution of microbial immigration in engineered water systems. Microbiome, 7(1), [144]. https://doi.org/10.1186/s40168-019-0760-0

De Souza Nogueira, J. P., He, F., Mangian, H. F., Oba, P. M., & De Godoy, M. R. C. (2019). Dietary supplementation of a fiber-prebiotic and saccharin-eugenol blend in extruded diets fed to dogs. Journal of animal science, 97(11), 4519-4531. https://doi.org/10.1093/jas/skz293

Jagtap, S. S., Bedekar, A. A., Liu, J. J., Jin, Y. S., & Rao, C. V. (2019). Production of galactitol from galactose by the oleaginous yeast Rhodosporidium toruloides IFO0880. Biotechnology for Biofuels, 12(1), [250]. https://doi.org/10.1186/s13068-019-1586-5

Kim, J. W., Lee, Y. G., Kim, S. J., Jin, Y-S., & Seo, J. H. (2019). Deletion of glycerol-3-phosphate dehydrogenase genes improved 2,3-butanediol production by reducing glycerol production in pyruvate decarboxylase-deficient Saccharomyces cerevisiae. Journal of Biotechnology, 304, 31-37. https://doi.org/10.1016/j.jbiotec.2019.08.009

Xu, H., Liu, J. J., Liu, Z., Li, Y., Jin, Y. S., & Zhang, J. (2019). Synchronization of stochastic expressions drives the clustering of functionally related genes. Science Advances, 5(10), [aax6525]. https://doi.org/10.1126/sciadv.aax6525

Kim, H. J., Lee, W. H., Turner, T. L., Kwak, S., & Jin, Y. S. (2019). An extra copy of the β-glucosidase gene improved the cellobiose fermentation capability of an engineered Saccharomyces cerevisiae strain. 3 Biotech, 9(10), [367]. https://doi.org/10.1007/s13205-019-1899-x

Bianco, C. M., Fröhlich, K. S., & Vanderpool, C. (2019). Bacterial Cyclopropane Fatty Acid Synthase mRNA Is Targeted by Activating and Repressing Small RNAs. Journal of bacteriology, 201(19). https://doi.org/10.1128/JB.00461-19

Bobrovskyy, M., Azam, M. S., Frandsen, J. K., Zhang, J., Poddar, A., Ma, X., ... Vanderpool, C. K. (2019). Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS. Molecular Microbiology, 112(4), 1199-1218. https://doi.org/10.1111/mmi.14355

Greening, C., Geier, R., Wang, C., Woods, L. C., Morales, S. E., McDonald, M. J., ... Mackie, R. I. (2019). Diverse hydrogen production and consumption pathways influence methane production in ruminants. ISME Journal, 13(10), 2617-2632. https://doi.org/10.1038/s41396-019-0464-2

Kim, K., Palmer, A. D., Vanderpool, C., & Slauch, J. M. (2019). The small RNA pint contributes to phop-mediated regulation of the salmonella pathogenicity island 1 type III secretion system in salmonella enterica serovar typhimurium. Journal of bacteriology, 201(19), [e00312-19]. https://doi.org/10.1128/JB.00312-19

Sun, L., Kwak, S., & Jin, Y. S. (2019). Vitamin A Production by Engineered Saccharomyces cerevisiae from Xylose via Two-Phase in Situ Extraction. ACS synthetic biology, 8(9), 2131-2140. https://doi.org/10.1021/acssynbio.9b00217

Zhang, Y., Lane, S., Chen, J. M., Hammer, S. K., Luttinger, J., Yang, L., ... Avalos, J. L. (2019). Xylose utilization stimulates mitochondrial production of isobutanol and 2-methyl-1-butanol in Saccharomyces cerevisiae. Biotechnology for Biofuels, 12(1), [223]. https://doi.org/10.1186/s13068-019-1560-2

Rattan, S., Beers, H. K., Kannan, A., Ramakrishnan, A., Brehm, E., Bagchi, I. C., ... Flaws, J. A. (2019). Prenatal and ancestral exposure to di(2-ethylhexyl) phthalate alters gene expression and DNA methylation in mouse ovaries. Toxicology and Applied Pharmacology, 379, [114629]. https://doi.org/10.1016/j.taap.2019.114629

Hamed, S., Wang, X., Shawky, R. M., Emara, M., Aldridge, P. D., & Rao, C. V. (2019). Synergistic action of SPI-1 gene expression in Salmonella enterica serovar typhimurium through transcriptional crosstalk with the flagellar system. BMC microbiology, 19(1). https://doi.org/10.1186/s12866-019-1583-7

Donovan, S. M., & Goulet, O. (2019). Introduction to the Sixth Global Summit on the Health Effects of Yogurt: Yogurt, More than the Sum of Its Parts. Advances in Nutrition, 10(5), 913S-916S. https://doi.org/10.1093/advances/nmz017

Kern, S., & Laurent, H. K. (2019). Childhood abuse predicts affective symptoms via HPA reactivity during mother-infant stress. Psychoneuroendocrinology, 107, 19-25. https://doi.org/10.1016/j.psyneuen.2019.04.023

Oosterkamp, M. J., Bauer, S., Ibáñez, A. B., Méndez-García, C., Hong, P. Y., Cann, I., & Mackie, R. I. (2019). Identification of methanogenesis and syntrophy as important microbial metabolic processes for optimal thermophilic anaerobic digestion of energy cane thin stillage. Bioresource Technology Reports, 7, [100254]. https://doi.org/10.1016/j.biteb.2019.100254

Bothwell, I. R., Cogan, D. P., Kim, T., Reinhardt, C. J., van der Donk, W. A., & Nair, S. K. (2019). Characterization of glutamyl-tRNA–dependent dehydratases using nonreactive substrate mimics. Proceedings of the National Academy of Sciences of the United States of America, 116(35), 17245-17250. https://doi.org/10.1073/pnas.1905240116

Turner, T. L., Lane, S., Jayakody, L. N., Zhang, G. C., Kim, H., Cho, W., & Jin, Y. S. (2019). Deletion of JEN1 and ADY2 reduces lactic acid yield from an engineered Saccharomyces cerevisiae, in xylose medium, expressing a heterologous lactate dehydrogenase. FEMS yeast research, 19(6), [foz050]. https://doi.org/10.1093/femsyr/foz050

Knight, L. C., Wang, M., Donovan, S. M., & Dilger, R. N. (2019). Early-Life Iron Deficiency and Subsequent Repletion Alters Development of the Colonic Microbiota in the Pig. Frontiers in Nutrition, 6, [120]. https://doi.org/10.3389/fnut.2019.00120

Feng, Y., Ibarra-Sánchez, L. A., Luu, L., Miller, M. J., & Lee, Y. (2019). Co-assembly of nisin and zein in microfluidics for enhanced antilisterial activity in Queso Fresco. LWT, 111, 355-362. https://doi.org/10.1016/j.lwt.2019.05.059

Splichal, I., Donovan, S. M., Splichalova, Z., Bunesova, V. N., Vlkova, E., Jenistova, V., ... Splichalova, A. (2019). Colonization of germ-free piglets with commensal lactobacillus amylovorus, lactobacillus mucosae, and probiotic e. Coli nissle 1917 and their interference with salmonella typhimurium. Microorganisms, 7(8), [273]. https://doi.org/10.3390/microorganisms7080273

Hull, N. M., Ling, F., Pinto, A. J., Albertsen, M., Jang, H. G., Hong, P. Y., ... Liu, W-T. (2019). Drinking Water Microbiome Project: Is it Time? Trends in Microbiology, 27(8), 670-677. https://doi.org/10.1016/j.tim.2019.03.011

Prendergast, M. E., Lipson, M., Sawchuk, E. A., Olalde, I., Ogola, C. A., Rohland, N., ... Reich, D. (2019). Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa. Science, 365(6448), [eaaw6275]. https://doi.org/10.1126/science.aaw6275

Shin, M., Kim, J. W., Ye, S., Kim, S., Jeong, D., Lee, D. Y., ... Kim, S. R. (2019). Comparative global metabolite profiling of xylose-fermenting Saccharomyces cerevisiae SR8 and Scheffersomyces stipitis. Applied Microbiology and Biotechnology, 103(13), 5435-5446. https://doi.org/10.1007/s00253-019-09829-5

Gan, L., Narisetty, N. N., & Liang, F. (2019). Bayesian Regularization for Graphical Models With Unequal Shrinkage. Journal of the American Statistical Association, 114(527), 1218-1231. https://doi.org/10.1080/01621459.2018.1482755

Narisetty, N., Shen, J., & He, X. (2019). Skinny Gibbs: A Consistent and Scalable Gibbs Sampler for Model Selection. Journal of the American Statistical Association, 114(527), 1205-1217. https://doi.org/10.1080/01621459.2018.1482754

Zhang, Y., & Liu, W-T. (2019). The application of molecular tools to study the drinking water microbiome–Current understanding and future needs. Critical Reviews in Environmental Science and Technology, 49(13), 1188-1235. https://doi.org/10.1080/10643389.2019.1571351

Zhang, L., Holle, M. J., Kim, J. S., Daum, M. A., & Miller, M. J. (2019). Nisin incorporation enhances the inactivation of lactic acid bacteria during the acid wash step of bioethanol production from sugarcane juice. Letters in Applied Microbiology, 69(1), 50-56. https://doi.org/10.1111/lam.13165

Tang, L., Zhong, L., Xue, K., Wang, S., Xu, Z., Lin, Q., ... Wang, Y. (2019). Warming counteracts grazing effects on the functional structure of the soil microbial community in a Tibetan grassland. Soil Biology and Biochemistry, 134, 113-121. https://doi.org/10.1016/j.soilbio.2019.02.018

Mohamed, E. T., Mundhada, H., Landberg, J., Cann, I., MacKie, R. I., Nielsen, A. T., ... Feist, A. M. (2019). Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution. Microbial cell factories, 18(1), [116]. https://doi.org/10.1186/s12934-019-1165-2

Wright, D. K., Maceachern, S., Ambrose, S. H., Choi, J., Choi, J., Lang, C., & Wang, H. (2019). Iron Age landscape changes in the Benoué River Valley, Cameroon. Quaternary Research, 1-17. https://doi.org/10.1017/qua.2019.25

Lundquist, A., McBride, B. A., Donovan, S. M., & Kieffer, A. (2019). An Exploratory Look at the Role of Childcare Providers as a Support and Resource for Breastfeeding Mothers. Breastfeeding Medicine, 14(5), 313-319. https://doi.org/10.1089/bfm.2018.0091

Han, S. O., Inui, M., & Jin, Y. S. (2019). Bioenergy and Biorefinery. Biotechnology Journal, 14(6), [1900160]. https://doi.org/10.1002/biot.201900160

Dong, S. H., Liu, A., Mahanta, N., Mitchell, D. A., & Nair, S. K. (2019). Mechanistic Basis for Ribosomal Peptide Backbone Modifications. ACS Central Science, 5(5), 842-851. https://doi.org/10.1021/acscentsci.9b00124

Gao, H., Mao, Y., Zhao, X., Liu, W. T., Zhang, T., & Wells, G. (2019). Genome-centric metagenomics resolves microbial diversity and prevalent truncated denitrification pathways in a denitrifying PAO-enriched bioprocess. Water Research, 155, 275-287. https://doi.org/10.1016/j.watres.2019.02.020

Robinson, K. N., Rowitz, B. M., Oliphant, U. J., Donovan, S. M., & Teran-Garcia, M. D. L. (2019). Larger omental adipocytes correlate with greater Fetuin-A reduction following sleeve gastrectomy. BMC Obesity, 6(1), [15]. https://doi.org/10.1186/s40608-019-0238-4

Schilling, B., Basisty, N., Christensen, D. G., Sorensen, D., Orr, J. S., Wolfe, A. J., & Rao, C. V. (2019). Global lysine acetylation in Escherichia coli results from growth conditions that favor acetate fermentation. Journal of bacteriology, 201(9), [e00768-18]. https://doi.org/10.1128/JB.00768-18

Barakat, R., Seymore, T., Lin, P. C. P., Park, C. J., & Ko, C. (2019). Prenatal exposure to an environmentally relevant phthalate mixture disrupts testicular steroidogenesis in adult male mice. Environmental Research, 172, 194-201. https://doi.org/10.1016/j.envres.2019.02.017

Narisetty, N., Mukherjee, B., Chen, Y. H., Gonzalez, R., & Meeker, J. D. (2019). Selection of nonlinear interactions by a forward stepwise algorithm: Application to identifying environmental chemical mixtures affecting health outcomes. Statistics in Medicine, 38(9), 1582-1600. https://doi.org/10.1002/sim.8059

Petronikolou, N., Ortega, M. A., Borisova, S. A., Nair, S. K., & Metcalf, W. W. (2019). Molecular Basis of Bacillus subtilis ATCC 6633 Self-Resistance to the Phosphono-oligopeptide Antibiotic Rhizocticin. ACS chemical biology, 14(4), 742-750. https://doi.org/10.1021/acschembio.9b00030

Mei, R., Kim, J., Wilson, F. P., Bocher, B. T. W., & Liu, W-T. (2019). Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process. Microbiome, 7(1), [65]. https://doi.org/10.1186/s40168-019-0682-x

Laurent, H. (2019). Challenges in Characterizing the “Mommy Brain”. Parenting, 19(1-2), 94-96. https://doi.org/10.1080/15295192.2019.1556007

Lin, C. Y., Alexander, C., Steelman, A. J., Warzecha, C. M., De Godoy, M. R. C., & Swanson, K. S. (2019). Effects of a Saccharomyces cerevisiae fermentation product on fecal characteristics, nutrient digestibility, fecal fermentative end-products, fecal microbial populations, immune function, and diet palatability in adult dogs. Journal of animal science, 97(4), 1586-1599. https://doi.org/10.1093/jas/skz064

Cannavale, C. N., Hassevoort, K. M., Edwards, C. G., Thompson, S. V., Burd, N. A., Holscher, H. D., ... Khan, N. A. (2019). Serum lutein is related to relational memory performance. Nutrients, 11(4), [768]. https://doi.org/10.3390/nu11040768

Devendran, S., Shrestha, R., Alves, J. M. P., Wolf, P. G., Ly, L., Hernandez, A. G., ... Ridlon, J. M. (2019). Clostridium scindens ATCC 35704: Integration of nutritional requirements, the complete genome sequence, and global transcriptional responses to bile acids. Applied and environmental microbiology, 85(7), [e00052-19]. https://doi.org/10.1128/AEM.00052-19

Kim, D. H., Park, H. J., Park, H. S., Lee, J. U., Ko, C. M., Gye, M. C., & Choi, J. M. (2019). Estrogen receptor α in T cells suppresses follicular helper T cell responses and prevents autoimmunity. Experimental and Molecular Medicine, 51(4), [41]. https://doi.org/10.1038/s12276-019-0237-z

Liu, J. J., Lee, J. W., Yun, E. J., Jung, S. M., Seo, J. H., & Jin, Y-S. (2019). L-Fucose production by engineered Escherichia coli. Biotechnology and bioengineering, 116(4), 904-911. https://doi.org/10.1002/bit.26907

Oba, P. M., Utterback, P. L., Parsons, C. M., De Godoy, M. R. C., & Swanson, K. S. (2019). Chemical composition, true nutrient digestibility, and true metabolizable energy of chicken-based ingredients differing by processing method using the precision-fed cecectomized rooster assay. Journal of animal science, 97(3), 998-1009. https://doi.org/10.1093/jas/sky461

Detweiler, K. B., He, F., Mangian, H. F., Davenport, G. M., & De Godoy, M. R. C. (2019). Effects of high inclusion of soybean hulls on apparent total tract macronutrient digestibility, fecal quality, and fecal fermentative end-product concentrations in extruded diets of adult dogs. Journal of animal science, 97(3), 1027-1035. https://doi.org/10.1093/jas/skz015

Detweiler, K. B., He, F., Mangian, H. F., Davenport, G. M., & De Godoy, M. R. C. (2019). Extruded feline diets formulated with high inclusion of soybean hulls: Effects on apparent total tract macronutrient digestibility, and fecal quality and metabolites. Journal of animal science, 97(3), 1042-1051. https://doi.org/10.1093/jas/skz014

Kwak, S., Jo, J. H., Yun, E. J., Jin, Y-S., & Seo, J. H. (2019). Production of biofuels and chemicals from xylose using native and engineered yeast strains. Biotechnology Advances, 37(2), 271-283. https://doi.org/10.1016/j.biotechadv.2018.12.003

Zukher, I., Pavlov, M., Tsibulskaya, D., Kulikovsky, A., Zyubko, T., Bikmetov, D., ... Severinova, K. (2019). Reiterative synthesis by the ribosome and recognition of the N-terminal formyl group by biosynthetic machinery contribute to evolutionary conservation of the length of antibiotic microcin c peptide precursor. mBio, 10(2), [e00768-19]. https://doi.org/10.1128/mBio.00768-19

Juneja, A., Zhang, G., Jin, Y-S., & Singh, V. (2019). Bioprocessing and technoeconomic feasibility analysis of simultaneous production of D-psicose and ethanol using engineered yeast strain KAM-2GD. Bioresource Technology, 275, 27-34. https://doi.org/10.1016/j.biortech.2018.12.025

Kim, K., Golubeva, Y. A., Vanderpool, C., & Slauch, J. M. (2019). Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium. Molecular Microbiology, 111(3), 570-587. https://doi.org/10.1111/mmi.14174

Park, C. J., Barakat, R., Ulanov, A., Li, Z., Lin, P. C., Chiu, K., ... Ko, C. M. J. (2019). Sanitary pads and diapers contain higher phthalate contents than those in common commercial plastic products. Reproductive Toxicology, 84, 114-121. https://doi.org/10.1016/j.reprotox.2019.01.005

Oh, E. J., Wei, N., Kwak, S., Kim, H., & Jin, Y-S. (2019). Overexpression of RCK1 improves acetic acid tolerance in Saccharomyces cerevisiae. Journal of Biotechnology, 292, 1-4. https://doi.org/10.1016/j.jbiotec.2018.12.013

Yun, E. J., Liu, J. J., Lee, J. W., Kwak, S., Yu, S., Kim, K. H., & Jin, Y. S. (2019). Biosynthetic Routes for Producing Various Fucosyl-Oligosaccharides. ACS synthetic biology, 8(2), 415-424. https://doi.org/10.1021/acssynbio.8b00436

Larmon, J. T., Mcdonald, H. G., Ambrose, S., Desantis, L. R. G., & Lucero, L. J. (2019). A year in the life of a giant ground sloth during the Last Glacial Maximum in Belize. Science Advances, 5(2), [eaau1200]. https://doi.org/10.1126/sciadv.aau1200

Hannon, B. A., Thompson, S. V., Edwards, C. G., Skinner, S. K., Niemiro, G. M., Burd, N. A., ... Khan, N. A. (2019). Dietary fiber is independently related to blood triglycerides among adults with overweight and obesity. Current Developments in Nutrition, 3(2), [nzy094].

Kim, J. H., Shin, J. C., & Donovan, S. M. (2019). Effectiveness of Workplace Lactation Interventions on Breastfeeding Outcomes in the United States: An Updated Systematic Review. Journal of Human Lactation, 35(1), 100-113. https://doi.org/10.1177/0890334418765464

Siegel, M. H., Gurung, R. B., & Donovan, S. M. (2019). Safety evaluation of 3′-siallylactose sodium salt supplementation on growth and clinical parameters in neonatal piglets. Regulatory Toxicology and Pharmacology, 101, 57-64. https://doi.org/10.1016/j.yrtph.2018.11.008

Zhang, S., Jagtap, S. S., Deewan, A., & Rao, C. V. (2019). pH selectively regulates citric acid and lipid production in Yarrowia lipolytica W29 during nitrogen-limited growth on glucose. Journal of Biotechnology, 290, 10-15. https://doi.org/10.1016/j.jbiotec.2018.10.012

Bobeica, S. C., Dong, S. H., Huo, L., Mazo, N., McLaughlin, M. I., Jiménez-Osés, G., ... van der Donk, W. A. (2019). Insights into AMS/PCAT transporters from biochemical and structural characterization of a double Glycine motif protease. eLife, 8. https://doi.org/10.7554/eLife.42305

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., ... Baldeón, M. E. (Accepted/In press). Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador. Gut Microbes. https://doi.org/10.1080/19490976.2019.1662260

Khan, F., & Laurent, H. K. (2019). Assessing the Impact of Mindfulness and Life Stress on Maternal Well-Being. Mindfulness, 10(1), 26-35. https://doi.org/10.1007/s12671-018-0943-y

Taylor, A. M., Thompson, S. V., Edwards, C. G., Musaad, S. M. A., Khan, N. A., & Holscher, H. D. (2019). Associations among diet, the gastrointestinal microbiota, and negative emotional states in adults. Nutritional Neuroscience. https://doi.org/10.1080/1028415X.2019.1582578

Narisetty, N. N. (Accepted/In press). Bayesian model selection for high-dimensional data. Handbook of Statistics. https://doi.org/10.1016/bs.host.2019.08.001

Dong, S. H., Kulikovsky, A., Zukher, I., Estrada, P., Dubiley, S., Severinov, K., & Nair, S. K. (2019). Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by the N-formyl of the peptide precursor. Chemical Science, 10(8), 2391-2395. https://doi.org/10.1039/C8SC03173H

Huo, L., Zhao, X., Acedo, J. Z., Estrada, P., Nair, S. K., & van der Donk, W. A. (Accepted/In press). Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae. ChemBioChem. https://doi.org/10.1002/cbic.201900483

Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H., & Nair, S. K. (2019). Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098. Organic and Biomolecular Chemistry, 17(6), 1506-1518. https://doi.org/10.1039/c8ob02840k

Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H., & Rao, C. V. (Accepted/In press). Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-019-10243-0

Neff, A. M., Blanco, S. C., Flaws, J. A., Bagchi, I. C., & Bagchi, M. K. (2019). Chronic Exposure of Mice to Bisphenol-A Alters Uterine Fibroblast Growth Factor Signaling and Leads to Aberrant Epithelial Proliferation. Endocrinology, 160(5), 1234-1246. https://doi.org/10.1210/en.2018-00872

Li, Y., Li, Y., Jin, W., Sharpton, T. J., Mackie, R. I., Cann, I., ... Zhu, W. (2019). Combined genomic, transcriptomic, proteomic, and physiological characterization of the growth of Pecoramyces sp. F1 in Monoculture and Co-culture with a Syntrophic Methanogen. Frontiers in Microbiology, 10(MAR), [435]. https://doi.org/10.3389/fmicb.2019.00435

Edwards, C. G., Walk, A. M., Cannavale, C. N., Flemming, I. R., Thompson, S. V., Reeser, G. R., ... Khan, N. A. (2019). Dietary choline is related to neural efficiency during a selective attention task among middle-aged adults with overweight and obesity. Nutritional Neuroscience. https://doi.org/10.1080/1028415X.2019.1623456

Orr, J. S., Christensen, D. G., Wolfe, A. J., & Rao, C. V. (2019). Extracellular acidic pH inhibits acetate consumption by decreasing gene transcription of the tricarboxylic acid cycle and the glyoxylate shunt. Journal of bacteriology, 201(2), [e00410-18]. https://doi.org/10.1128/JB.00410-18

Madak-Erdogan, Z., Band, S., Zhao, Y. C., Smith, B. P., Kulkoyluoglu-Cotul, E., Zuo, Q., ... Flaws, J. A. (2019). Free fatty acids rewire cancer metabolism in obesity-associated breast cancer via estrogen receptor and mTOR signaling. Cancer Research, 79(10), 2494-2510. https://doi.org/10.1158/0008-5472.CAN-18-2849

the STRONG Kids Research Team, Donovan, S. M., & Teran-Garcia, M. D. L. (2019). Genetic risk scores demonstrate the cumulative association of single nucleotide polymorphisms in gut microbiome-related genes with obesity phenotypes in preschool age children. Pediatric Obesity, 14(9), [e12530]. https://doi.org/10.1111/ijpo.12530

Donovan, S. M., & Rao, G. (2019). Health benefits of yogurt among infants and toddlers aged 4 to 24 months: A systematic review. Nutrition reviews, 77(7), 478-486. https://doi.org/10.1093/nutrit/nuz009

Donovan, S. M. (2019). Human Milk Proteins: Composition and Physiological Significance. Nestle Nutrition Institute Workshop Series, 90, 93-101. https://doi.org/10.1159/000490298

Edwards, C. G., Walk, A. M., Cannavale, C. N., Thompson, S. V., Reeser, G. E., Holscher, H. D., & Khan, N. A. (2019). Macular Xanthophylls and Event-Related Brain Potentials among Overweight Adults and Those with Obesity. Molecular Nutrition and Food Research, 63(15), [1801059]. https://doi.org/10.1002/mnfr.201801059

Nelson, B. W., Wright, D. B., Allen, N. B., & Laurent, H. K. (2019). Maternal stress and social support prospectively predict infant inflammation. Brain, Behavior, and Immunity. https://doi.org/10.1016/j.bbi.2019.05.010

Chekan, J. R., Ongpipattanakul, C., Wright, T. R., Zhang, B., Martin Bollinger, J., Rajakovich, L. J., ... Nair, S. K. (2019). Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants. Proceedings of the National Academy of Sciences of the United States of America, 116(27), 13299-13304. https://doi.org/10.1073/pnas.1900711116

Zealand, A. M., Mei, R., Roskilly, A. P., Liu, W. T., & Graham, D. W. (2019). Molecular microbial ecology of stable versus failing rice straw anaerobic digesters. Microbial Biotechnology, 12(5), 879-891. https://doi.org/10.1111/1751-7915.13438

Yuan, H., Mei, R., Liao, J., & Liu, W. T. (2019). Nexus of stochastic and deterministic processes on microbial community assembly in biological systems. Frontiers in Microbiology, 10(JULY), [1536]. https://doi.org/10.3389/fmicb.2019.01536

Duffy, D. M., Ko, C., Jo, M., Brannstrom, M., & Curry, T. E. (2019). Ovulation: Parallels with inflammatory processes. Endocrine reviews, 40(2), 369-416. https://doi.org/10.1210/er.2018-00075

Yang, X. D., Li, W., Zhang, S., Wu, D., Jiang, X., Tan, R., ... Su, B. (Accepted/In press). PLK4 deubiquitination by Spata2-CYLD suppresses NEK7-mediated NLRP3 inflammasome activation at the centrosome. EMBO Journal, [e102201]. https://doi.org/10.15252/embj.2019102201

Donovan, S. M., German, J. B., Lönnerdal, B., & Lucas, A. (2019). Preface. Nestle Nutrition Institute Workshop Series, 90, VII-IX. https://doi.org/10.1159/000490600

Kwak, S., Yun, E. J., Lane, S., Oh, E. J., Kim, K. H., & Jin, Y. S. (Accepted/In press). Redirection of the Glycolytic Flux Enhances Isoprenoid Production in Saccharomyces cerevisiae. Biotechnology Journal, [1900173]. https://doi.org/10.1002/biot.201900173

King, A. M., Vanderpool, C. K., & Degnan, P. H. (2019). sRNA target prediction organizing tool (SPOT) integrates computational and experimental data to facilitate functional characterization of bacterial small RNAs. mSphere, 4(1), [e00561-18]. https://doi.org/10.1128/mSphere.00561-18

Doden, H. L., Pollet, R. M., Mythen, S. M., Wawrzak, Z., Devendran, S., Cann, I., ... Ridlon, J. M. (2019). Structural and biochemical characterization of 20-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32. Journal of Biological Chemistry, 294(32), 12040-12053. https://doi.org/10.1074/jbc.RA119.009390

Donovan, S. M. (2019). Summary on Clinical Aspects of Human Milk on Infant Health Outcomes. Nestle Nutrition Institute Workshop Series, 90, 175-178. https://doi.org/10.1159/000490485

Dawson, D. N., Volpe, V. V., & Laurent, H. K. (2019). Synergistic Effects of Psychological Intimate Partner Violence Exposure and Gender Discrimination on Postnatal Mental Health Trajectories. Journal of interpersonal violence. https://doi.org/10.1177/0886260519844274

Lu, T., Liu, F., Mao, J., & Hua, Q. (2019). Synthetic, Context-Dependent Microbial Consortium of Predator and Prey. ACS synthetic biology. https://doi.org/10.1021/acssynbio.9b00110

Ridlon, J. M., Devendran, S., Alves, J. M., Doden, H., Wolf, P. G., Pereira, G. V., ... Gaskins, H. R. (2019). The ‘in vivo lifestyle’ of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice. Gut Microbes. https://doi.org/10.1080/19490976.2019.1618173

Nelson, B. W., Bernstein, R., Allen, N. B., & Laurent, H. K. (Accepted/In press). The quality of early infant-caregiver relational attachment and longitudinal changes in infant inflammation across 6 months. Developmental psychobiology. https://doi.org/10.1002/dev.21940

Lane, S., Zhang, Y., Yun, E. J., Ziolkowski, L., Zhang, G., Jin, Y. S., & Avalos, J. L. (Accepted/In press). Xylose assimilation enhances the production of isobutanol in engineered Saccharomyces cerevisiae. Biotechnology and bioengineering. https://doi.org/10.1002/bit.27202

Kaczmarek, J. L., Liu, X., Charron, C. S., Novotny, J. A., Jeffery, E. H., Seifried, H. E., ... Holscher, H. D. (2019). Broccoli consumption affects the human gastrointestinal microbiota. Journal of Nutritional Biochemistry, 63, 27-34. https://doi.org/10.1016/j.jnutbio.2018.09.015

Jones, A. R., Robbs, C. M., Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., ... Khan, N. A. (2018). Retinal morphometric markers of crystallized and fluid intelligence among adults with overweight and obesity. Frontiers in Psychology, 9(DEC), [2650]. https://doi.org/10.3389/fpsyg.2018.02650

Mei, R., Nobu, M. K., Narihiro, T., Yu, J., Sathyagal, A., Willman, E., & Liu, W-T. (2018). Novel Geobacter species and diverse methanogens contribute to enhanced methane production in media-added methanogenic reactors. Water Research, 147, 403-412. https://doi.org/10.1016/j.watres.2018.10.026

Surya, A., Liu, X., & Miller, M. J. (2018). Glutathione Utilization in Lactobacillus fermentum CECT 5716. Journal of Agricultural and Food Chemistry, 66(48), 12651-12656. https://doi.org/10.1021/acs.jafc.8b06136

Albanna, A., Sim, M., Hoskisson, P. A., Gillespie, C., Rao, C. V., & Aldridge, P. D. (2018). Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences. Scientific reports, 8(1), [16705]. https://doi.org/10.1038/s41598-018-35005-2

Shen, Y., Huang, P. C., Huang, C., Sun, P., Monroy, G. L., Wu, W., ... Nguyen, T. H. (2018). Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms. npj Biofilms and Microbiomes, 4(1), [15]. https://doi.org/10.1038/s41522-018-0058-1

Hernandez, J., Volland, A., Leyshon, B. J., Juda, M., Ridlon, J. M., Johnson, R. W., & Steelman, A. J. (2018). Effect of imidacloprid ingestion on immune responses to porcine reproductive and respiratory syndrome virus. Scientific reports, 8(1), [11615]. https://doi.org/10.1038/s41598-018-30093-6

Lane, S., Xu, H., Oh, E. J., Kim, H., Lesmana, A., Jeong, D., ... Kim, S. R. (2018). Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae. Scientific reports, 8(1), [2613]. https://doi.org/10.1038/s41598-018-20804-4

Ammar, E. M., Wang, X., & Rao, C. V. (2018). Regulation of metabolism in Escherichia coli during growth on mixtures of the non-glucose sugars: Arabinose, lactose, and xylose. Scientific reports, 8(1), [609]. https://doi.org/10.1038/s41598-017-18704-0

Xia, P. F., Li, Q., Tan, L. R., Liu, M. M., Jin, Y-S., & Wang, S. G. (2018). Synthetic Whole-Cell Biodevices for Targeted Degradation of Antibiotics. Scientific reports, 8(1), [2906]. https://doi.org/10.1038/s41598-018-21350-9

Shiraishi, M., Ishino, S., Heffernan, M., Cann, I., & Ishino, Y. (2018). The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG. Scientific reports, 8(1), [15791]. https://doi.org/10.1038/s41598-018-34000-x

Neu, L., Bänziger, C., Proctor, C. R., Zhang, Y., Liu, W. T., & Hammes, F. (2018). Ugly ducklings - The dark side of plastic materials in contact with potable water. npj Biofilms and Microbiomes, 4(1), [7]. https://doi.org/10.1038/s41522-018-0050-9

Klurfeld, D. M., Davis, C. D., Karp, R. W., Allen-Vercoe, E., Chang, E. B., Chassaing, B., ... Lynch, C. J. (2018). Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome. American Journal of Physiology - Endocrinology and Metabolism, 315(6), E1087-E1097. https://doi.org/10.1152/ajpendo.00058.2018

Narihiro, T., Nobu, M. K., Bocher, B. T. W., Mei, R., & Liu, W-T. (2018). Co-occurrence network analysis reveals thermodynamics-driven microbial interactions in methanogenic bioreactors. Environmental Microbiology Reports, 10(6), 673-685. https://doi.org/10.1111/1758-2229.12689

Jayakody, L. N., Liu, J. J., Yun, E. J., Turner, T. L., Oh, E. J., & Jin, Y-S. (2018). Direct conversion of cellulose into ethanol and ethyl-β-d-glucoside via engineered Saccharomyces cerevisiae. Biotechnology and bioengineering, 115(12), 2859-2868. https://doi.org/10.1002/bit.26799

Edwards, C. G., Walk, A. M., Thompson, S. V., Mullen, S. P., Holscher, H. D., & Khan, N. A. (2018). Disordered eating attitudes and behavioral and neuroelectric indices of cognitive flexibility in individuals with overweight and obesity. Nutrients, 10(12), [1902]. https://doi.org/10.3390/nu10121902

Hidalgo-Ahumada, C. A. P., Nobu, M. K., Narihiro, T., Tamaki, H., Liu, W. T., Kamagata, Y., ... Sousa, D. Z. (2018). Novel energy conservation strategies and behaviour of Pelotomaculum schinkii driving syntrophic propionate catabolism. Environmental Microbiology, 20(12), 4503-4511. https://doi.org/10.1111/1462-2920.14388

Ozgen, V. C., Kong, W., Blanchard, A. E., Liu, F., & Lu, T. (2018). Spatial interference scale as a determinant of microbial range expansion. Science Advances, 4(11), [eaau0695]. https://doi.org/10.1126/sciadv.aau0695

Liu, J. J., Kwak, S., Pathanibul, P., Lee, J. W., Yu, S., Yun, E. J., ... Jin, Y-S. (2018). Biosynthesis of a Functional Human Milk Oligosaccharide, 2′-Fucosyllactose, and l -Fucose Using Engineered Saccharomyces cerevisiae. ACS synthetic biology, 7(11), 2529-2536. https://doi.org/10.1021/acssynbio.8b00134

Harris, S. C., Devendran, S., Méndez- García, C., Mythen, S. M., Wright, C. L., Fields, C. J., ... Ridlon, J. M. (2018). Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243 T Gut Microbes, 9(6), 523-539. https://doi.org/10.1080/19490976.2018.1458180

Sutter, C., Fiese, B., Lundquist, A., Davis, E. C., McBride, B. A., & Donovan, S. M. (2018). Sources of information and support for breastfeeding: Alignment with centers for disease control and prevention strategies. Breastfeeding Medicine, 13(9), 598-606. https://doi.org/10.1089/bfm.2018.0056

An, R., Guan, C., Ji, M., & Donovan, S. M. (2018). State laws governing competitive foods and beverages sold in schools and childhood obesity among children with special healthcare needs, 2007-2016. American journal of health behavior, 42(6), 124-133. https://doi.org/10.5993/AJHB.42.6.12

Hale, V. L., Jeraldo, P., Chen, J., Mundy, M., Yao, J., Priya, S., ... Chia, N. (2018). Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers. Genome medicine, 10(1). https://doi.org/10.1186/s13073-018-0586-6

Ongpipattanakul, C., & Nair, S. K. (2018). Molecular Basis for Autocatalytic Backbone N-Methylation in RiPP Natural Product Biosynthesis. ACS chemical biology, 13(10), 2989-2999. https://doi.org/10.1021/acschembio.8b00668

Donovan, S. M. (2018). 90th Anniversary Commentary: Prebiotics in Infancy for Allergy Prevention: Promising Findings, but No Consensus. Journal of Nutrition, 148(10), 1691-1692. https://doi.org/10.1093/jn/nxy196

Raina, M., King, A., Bianco, C., & Vanderpool, C. K. (2018). Dual-function RNAs. Microbiology Spectrum, 6(5), [RWR-0032-2018]. https://doi.org/10.1128/microbiolspec.RWR-0032-2018

Zealand, A. M., Mei, R., Papachristodoulou, P., Roskilly, A. P., Liu, W. T., & Graham, D. W. (2018). Microbial community composition and diversity in rice straw digestion bioreactors with and without dairy manure. Applied Microbiology and Biotechnology, 102(19), 8599-8612. https://doi.org/10.1007/s00253-018-9243-7

An, L., Cogan, D. P., Navo, C. D., Jiménez-Osés, G., Nair, S. K., & van der Donk, W. A. (2018). Substrate-assisted enzymatic formation of lysinoalanine in duramycin. Nature chemical biology, 14(10), 928-933. https://doi.org/10.1038/s41589-018-0122-4

Park, J. H., Yoon, J. J., Kumar, G., Jin, Y-S., & Kim, S. H. (2018). Effects of acclimation and pH on ammonia inhibition for mesophilic methanogenic microflora. Waste Management, 80, 218-223. https://doi.org/10.1016/j.wasman.2018.09.016

Madden, G., Arnold, E. R., Karsten, J., & Ambrose, S. H. (2018). Evaluating competition and conflict among western Ukraine Neolithic farmers with stable isotope analyses of human teeth. Journal of Archaeological Science: Reports, 21, 897-903. https://doi.org/10.1016/j.jasrep.2018.08.031

Kim, D. H., Kim, I. J., Yun, E. J., Kwak, S., Jin, Y-S., & Kim, K. H. (2018). Metabolic engineering of Saccharomyces cerevisiae by using the CRISPR-Cas9 system for enhanced fatty acid production. Process Biochemistry, 73, 23-28. https://doi.org/10.1016/j.procbio.2018.07.011

Niemiro, G. M., Skinner, S. K., Walk, A. M., Edwards, C. G., De Lisio, M., Holscher, H. D., ... Khan, N. A. (2018). Oral Glucose Tolerance is Associated with Neuroelectric Indices of Attention Among Adults with Overweight and Obesity. Obesity, 26(10), 1550-1557. https://doi.org/10.1002/oby.22276

Marshall, F., Reid, R. E. B., Goldstein, S., Storozum, M., Wreschnig, A., Hu, L., ... Ambrose, S. H. (2018). Ancient herders enriched and restructured African grasslands. Nature, 561(7723), 387-390. https://doi.org/10.1038/s41586-018-0456-9

O'Reilly, M. C., Dong, S. H., Rossi, F. M., Karlen, K. M., Kumar, R. S., Nair, S. K., & Blackwell, H. E. (2018). Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop “Out” Conformation for LasR. Cell chemical biology, 25(9), 1128-1139.e3. https://doi.org/10.1016/j.chembiol.2018.06.007

Kapoor, I., & Nair, S. K. (2018). Structure-Guided Analyses of a Key Enzyme Involved in the Biosynthesis of an Antivitamin. Biochemistry, 57(36), 5282-5288. https://doi.org/10.1021/acs.biochem.8b00576

Algya, K. M., Cross, T. W. L., Leuck, K. N., Kastner, M. E., Baba, T., Lye, L., ... Swanson, K. S. (2018). Apparent total-tract macronutrient digestibility, serum chemistry, urinalysis, and fecal characteristics, metabolites and microbiota of adult dogs fed extruded, mildly cooked, and raw diets. Journal of animal science, 96(9), 3670-3683. https://doi.org/10.1093/jas/sky235

Zhao, X. L., Chen, J. J., SI, S. Y., Chen, L-F., & Wang, Z. (2018). T63 inhibits osteoclast differentiation through regulating MAPKs and Akt signaling pathways. European Journal of Pharmacology, 834, 30-35. https://doi.org/10.1016/j.ejphar.2018.07.009

Khatun, M. A., Hoque, M. A., Zhang, Y., Lu, T., Cui, L., Zhou, N. Y., & Feng, Y. (2018). Bacterial Consortium-Based Sensing System for Detecting Organophosphorus Pesticides. Analytical chemistry, 90(17), 10577-10584. https://doi.org/10.1021/acs.analchem.8b02709

Alexander, C., Cross, T. W. L., Devendran, S., Neumer, F., Theis, S., Ridlon, J. M., ... Swanson, K. S. (2018). Effects of prebiotic inulin-Type fructans on blood metabolite and hormone concentrations and faecal microbiota and metabolites in overweight dogs. Clay Minerals, 120(6), 711-720. https://doi.org/10.1017/S0007114518001952

Jayakody, L. N., Turner, T. L., Yun, E. J., Kong, I. I., Liu, J. J., & Jin, Y-S. (2018). Expression of Gre2p improves tolerance of engineered xylose-fermenting Saccharomyces cerevisiae to glycolaldehyde under xylose metabolism. Applied Microbiology and Biotechnology, 102(18), 8121-8133. https://doi.org/10.1007/s00253-018-9216-x

Perry, E., Cross, T. W. L., Francis, J. M., Holscher, H. D., Clark, S. D., & Swanson, K. S. (2018). Effect of Road Transport on the Equine Cecal Microbiota. Journal of Equine Veterinary Science, 68, 12-20. https://doi.org/10.1016/j.jevs.2018.04.004

Holle, M. J., Ibarra-Sánchez, L. A., Liu, X., Stasiewicz, M. J., & Miller, M. J. (2018). Microbial analysis of commercially available US Queso Fresco. Journal of Dairy Science, 101(9), 7736-7745. https://doi.org/10.3168/jds.2017-14037

D'Alessandro-Gabazza, C. N., Méndez-García, C., Hataji, O., Westergaard, S., Watanabe, F., Yasuma, T., ... Gabazza, E. C. (2018). Identification of halophilic microbes in lung fibrotic tissue by oligotyping. Frontiers in Microbiology, 9(AUG), [1892]. https://doi.org/10.3389/fmicb.2018.01892

Barakat, R., Lin, P. C., Park, C. J., Best-Popescu, C., Bakry, H. H., Abosalem, M. E., ... Ko, C. M. (2018). Corrigendum to "Prenatal Exposure to DEHP Induces Neuronal Degeneration and Neurobehavioral Abnormalities in Adult Male Mice". Toxicological sciences : an official journal of the Society of Toxicology, 164(2). https://doi.org/10.1093/toxsci/kfy165

Kong, W., Meldgin, D. R., Collins, J. J., & Lu, T. (2018). Designing microbial consortia with defined social interactions. Nature chemical biology, 14(8), 821-829. https://doi.org/10.1038/s41589-018-0091-7

de Godoy, M. R. C. (2018). Pancosma Comparative Gut Physiology Symposium: All About Appetite Regulation: Effects of diet and gonadal steroids on appetite regulation and food intake of companion animals. Journal of animal science, 96(8), 3526-3536. https://doi.org/10.1093/jas/sky146

the STRONG Kids Team (2018). Home feeding environment and picky eating behavior in preschool-aged children: A prospective analysis. Eating Behaviors, 30, 76-82. https://doi.org/10.1016/j.eatbeh.2018.06.003

Tang, Q., Lu, T., & Liu, S. J. (2018). Developing a Synthetic Biology Toolkit for Comamonas testosteroni, an Emerging Cellular Chassis for Bioremediation. ACS synthetic biology, 7(7), 1753-1762. https://doi.org/10.1021/acssynbio.7b00430

Niemiro, G. M., Allen, J. M., Mailing, L. J., Khan, N. A., Holscher, H. D., Woods, J. A., & De Lisio, M. (2018). Effects of endurance exercise training on inflammatory circulating progenitor cell content in lean and obese adults. Journal of Physiology, 596(14), 2811-2822. https://doi.org/10.1113/JP276023

The Genome Standards Consortium (2018). Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (Nature Biotechnology (2017) 35 (725-731) DOI: 10.1038/nbt.3893). Nature Biotechnology, 36(7). https://doi.org/10.1038/nbt0718-660d

Petronikolou, N., & Nair, S. K. (2018). Structural and Biochemical Studies of a Biocatalyst for the Enzymatic Production of Wax Esters. ACS Catalysis, 8(7), 6334-6344. https://doi.org/10.1021/acscatal.8b00787

Estrada, P., Morita, M., Hao, Y., Schmidt, E. W., & Nair, S. K. (2018). A Single Amino Acid Switch Alters the Isoprene Donor Specificity in Ribosomally Synthesized and Post-Translationally Modified Peptide Prenyltransferases. Journal of the American Chemical Society, 140(26), 8124-8127. https://doi.org/10.1021/jacs.8b05187

He, F., Posselt, D. J., Narisetty, N., Zarzycki, C. M., & Nair, V. N. (2018). Application of multivariate sensitivity analysis techniques to AGCM-simulated tropical cyclones. Monthly Weather Review, 146(7), 2065-2088. https://doi.org/10.1175/MWR-D-17-0265.1

Liu, G., Zhang, Y., van der Mark, E., Magic-Knezev, A., Pinto, A., van den Bogert, B., ... Medema, G. (2018). Assessing the origin of bacteria in tap water and distribution system in an unchlorinated drinking water system by SourceTracker using microbial community fingerprints. Water Research, 138, 86-96. https://doi.org/10.1016/j.watres.2018.03.043

Lipscomb, S. T., Becker, D. R., Laurent, H. K., Neiderhiser, J. M., Shaw, D. S., Natsuaki, M. N., ... Leve, L. D. (2018). Examining morning HPA axis activity as a moderator of hostile, over-reactive parenting on children's skills for success in school. Infant and Child Development, 27(4), [e2083]. https://doi.org/10.1002/icd.2083

Wei, L. J., Kwak, S., Liu, J. J., Lane, S., Hua, Q., Kweon, D. H., & Jin, Y-S. (2018). Improved squalene production through increasing lipid contents in Saccharomyces cerevisiae. Biotechnology and bioengineering, 115(7), 1793-1800. https://doi.org/10.1002/bit.26595

Yu, S., Liu, J. J., Yun, E. J., Kwak, S., Kim, K. H., & Jin, Y-S. (2018). Production of a human milk oligosaccharide 2'-fucosyllactose by metabolically engineered Saccharomyces cerevisiae. Microbial cell factories, 17(1), [101]. https://doi.org/10.1186/s12934-018-0947-2

Karig, D., Michael Martini, K., Lu, T., DeLateur, N. A., Goldenfeld, N., & Weiss, R. (2018). Stochastic Turing patterns in a synthetic bacterial population. Proceedings of the National Academy of Sciences of the United States of America, 115(26), 6572-6577. https://doi.org/10.1073/pnas.1720770115

Ongpipattanakul, C., & Nair, S. K. (2018). Biosynthetic Proteases That Catalyze the Macrocyclization of Ribosomally Synthesized Linear Peptides. Biochemistry, 57(23), 3201-3209. https://doi.org/10.1021/acs.biochem.8b00114

Kim, H., Oh, E. J., Lane, S. T., Lee, W. H., Cate, J. H. D., & Jin, Y-S. (2018). Enhanced cellobiose fermentation by engineered Saccharomyces cerevisiae expressing a mutant cellodextrin facilitator and cellobiose phosphorylase. Journal of Biotechnology, 275, 53-59. https://doi.org/10.1016/j.jbiotec.2018.04.008

Wang, Y., Jeffery, E. H., Miller, M. J., Wallig, M. A., & Wu, Y. (2018). Lightly cooked broccoli is as effective as raw broccoli in mitigating dextran sulfate sodium-induced colitis in mice. Nutrients, 10(6), [748]. https://doi.org/10.3390/nu10060748

Ling, F., Whitaker, R., LeChevallier, M. W., & Liu, W. T. (2018). Drinking water microbiome assembly induced by water stagnation. ISME Journal, 12(6), 1520-1531. https://doi.org/10.1038/s41396-018-0101-5

Holscher, H. D., Guetterman, H. M., Swanson, K. S., An, R., Matthan, N. R., Lichtenstein, A. H., ... Baer, D. J. (2018). Walnut consumption alters the gastrointestinal microbiota, microbially derived secondary bile acids, and health markers in healthy adults: A randomized controlled trial. Journal of Nutrition, 148(6), 861-867. https://doi.org/10.1093/jn/nxy004

Ibarra-Sánchez, L. A., Van Tassell, M. L., & Miller, M. J. (2018). Antimicrobial behavior of phage endolysin PlyP100 and its synergy with nisin to control Listeria monocytogenes in Queso Fresco. Food Microbiology, 72, 128-134. https://doi.org/10.1016/j.fm.2017.11.013

Berding, K., Holscher, H. D., Parker, A. A., & Donovan, S. M. (2018). Fecal microbiome composition and stability in 4- to 8-year old children is associated with dietary patterns and nutrient intake. Journal of Nutritional Biochemistry, 56, 165-174. https://doi.org/10.1016/j.jnutbio.2018.01.002

Hylemon, P. B., Harris, S. C., & Ridlon, J. M. (2018). Metabolism of hydrogen gases and bile acids in the gut microbiome. FEBS Letters, 592(12), 2070-2082. https://doi.org/10.1002/1873-3468.13064

Kim, J. S., Daum, M. A., Jin, Y-S., & Miller, M. J. (2018). Yeast derived lysA2 can control bacterial contamination in ethanol fermentation. Viruses, 10(6), [281]. https://doi.org/10.3390/v10060281

Morita, M., Hao, Y., Jokela, J. K., Sardar, D., Lin, Z., Sivonen, K., ... Schmidt, E. W. (2018). Post-Translational Tyrosine Geranylation in Cyanobactin Biosynthesis. Journal of the American Chemical Society, 140(19), 6044-6048. https://doi.org/10.1021/jacs.8b03137

Tang, Q., Lu, T., & Liu, S. J. (2018). Engineering the bacterium Comamonas testosteroni CNB-1: Plasmid curing and genetic manipulation. Biochemical Engineering Journal, 133, 74-82. https://doi.org/10.1016/j.bej.2018.01.030

Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., ... Jin, Y. S. (2018). Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass. Biotechnology for Biofuels, 11(1), [140]. https://doi.org/10.1186/s13068-018-1135-7

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H., & Jin, Y. S. (2018). A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii. Applied and environmental microbiology, 84(10), [e02858-17]. https://doi.org/10.1128/AEM.02858-17

Li, Q., Lawrence, C. R., Nowak, R. A., Flaws, J. A., Bagchi, M. K., & Bagchi, I. C. (2018). Bisphenol A and phthalates modulate peritoneal macrophage function in female mice involving SYMD2-H3K36 dimethylation. Endocrinology, 159(5), 2216-2228. https://doi.org/10.1210/en.2017-03000

Lee-Thacker, S., Choi, Y., Taniuchi, I., Takarada, T., Yoneda, Y., Ko, C., & Jo, M. (2018). Core binding factor b expression in ovarian granulosa cells is essential for female fertility. Endocrinology, 159(5), 2094-2109. https://doi.org/10.1210/en.2018-00011

Doden, H., Sallam, L. A., Devendran, S., Ly, L., Doden, G., Daniel, S. L., ... Ridlon, J. M. (2018). Metabolism of oxo-bile acids and characterization of recombinant 12α- hydroxysteroid dehydrogenases from bile acid 7α-dehydroxylating human gut bacteria. Applied and environmental microbiology, 84(10), [e00235-18]. https://doi.org/10.1128/AEM.00235-18

Bailey, M. A., & Holscher, H. D. (2018). Microbiome-mediated effects of the Mediterranean diet on inflammation. Advances in Nutrition, 9(3), 93-206. https://doi.org/10.1093/advances/nmy013

Nishihama, K., Yasuma, T., Yano, Y., D' Alessandro-Gabazza, C. N., Toda, M., Hinneh, J. A., ... Gabazza, E. C. (2018). Anti-apoptotic activity of human matrix metalloproteinase-2 attenuates diabetes mellitus. Metabolism: Clinical and Experimental, 82, 88-99. https://doi.org/10.1016/j.metabol.2018.01.016

Luo, J., Han, L., Liu, L., Gao, L., Xue, B., Wang, Y., ... Peng, X. (2018). Catechin supplemented in a FOS diet induces weight loss by altering cecal microbiota and gene expression of colonic epithelial cells. Food and Function, 9(5), 2962-2969. https://doi.org/10.1039/c8fo00035b

Laurent, H., Goodman, S. H., Stowe, Z. N., Halperin, M., Khan, F., Wright, D., ... Knight, B. (2018). Course of ante-and postnatal depressive symptoms related to mothers' HPA axis regulation. Journal of abnormal psychology, 127(4), 404-416. https://doi.org/10.1037/abn0000348

Yun, E. J., Lee, J., Kim, D. H., Kim, J., Kim, S., Jin, Y-S., & Kim, K. H. (2018). Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica. Journal of Biotechnology, 272-273, 7-13. https://doi.org/10.1016/j.jbiotec.2018.02.011

Petronikolou, N., Hollatz, A. J., Schuler, M. A., & Nair, S. K. (2018). Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside. ChemBioChem, 19(8), 784-788. https://doi.org/10.1002/cbic.201700679

Yang, X., Narisetty, N., & He, X. (2018). A New Approach to Censored Quantile Regression Estimation. Journal of Computational and Graphical Statistics, 27(2), 417-425. https://doi.org/10.1080/10618600.2017.1385469

Beloshapka, A. N., Cattai de Godoy, M. R., Carter, R. A., Fascetti, A. J., Yu, Z., McIntosh, B. J., ... Buff, P. R. (2018). Longitudinal changes in blood metabolites, amino acid profile, and oxidative stress markers in american foxhounds fed a nutrient-fortified diet. Journal of animal science, 96(3), 930-940. https://doi.org/10.1093/jas/skx070

Reznikov, E. A., Comstock, S. S., Hoeflinger, J. L., Wang, M., Miller, M. J., & Donovan, S. M. (2018). Dietary bovine Lactoferrin reduces Staphylococcus aureus in the tissues and modulates the immune response in piglets systemically infected with S. aureus. Current Developments in Nutrition, 2(4), [nzy001].

Allen, J. M., Mailing, L. J., Niemiro, G. M., Moore, R., Cook, M. D., White, B. A., ... Woods, J. A. (2018). Exercise Alters Gut Microbiota Composition and Function in Lean and Obese Humans. Medicine and Science in Sports and Exercise, 50(4), 747-757. https://doi.org/10.1249/MSS.0000000000001495

Mythen, S. M., Devendran, S., Méndez-García, C., Cann, I., & Ridlon, J. M. (2018). Targeted synthesis and characterization of a gene cluster encoding NAD(P)H-dependent 3α-, 3β-, and 12α-hydroxysteroid dehydrogenases from Eggerthella CAG:298, a gut metagenomic sequence. Applied and environmental microbiology, 84(7), [e02475-17]. https://doi.org/10.1128/AEM.02475-17

the STRONG Kids Team (2018). Child body mass index, genotype and parenting in the prediction of restrictive feeding. Pediatric Obesity, 13(4), 239-246. https://doi.org/10.1111/ijpo.12219

Richardson, K. A., Hannon, P. R., Johnson-Walker, Y. J., Myint, M. S., Flaws, J. A., & Nowak, R. A. (2018). Di (2-ethylhexyl) phthalate (DEHP) alters proliferation and uterine gland numbers in the uteri of adult exposed mice. Reproductive Toxicology, 77, 70-79. https://doi.org/10.1016/j.reprotox.2018.01.006

Fleming, S. A., Chichlowski, M., Berg, B. M., Donovan, S. M., & Dilger, R. N. (2018). Dietary sialyllactose does not influence measures of recognition memory or diurnal activity in the young pig. Nutrients, 10(4), [395]. https://doi.org/10.3390/nu10040395

Khan, N. A., Walk, A. M., Edwards, C. G., Jones, A. R., Cannavale, C. N., Thompson, S. V., ... Holscher, H. D. (2018). Macular xanthophylls are related to intellectual ability among adults with overweight and obesity. Nutrients, 10(4), [396]. https://doi.org/10.3390/nu10040396

Laurent, H. K., Wright, D., & Finnegan, M. (2018). Mindfulness-related differences in neural response to own infant negative versus positive emotion contexts. Developmental Cognitive Neuroscience, 30, 70-76. https://doi.org/10.1016/j.dcn.2018.01.002

Mahanta, N., Liu, A., Dong, S., Nair, S. K., & Mitchell, D. A. (2018). Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proceedings of the National Academy of Sciences of the United States of America, 115(12), 3030-3035. https://doi.org/10.1073/pnas.1722324115

Li, Y., Liu, M., Chen, L-F., & Chen, R. (2018). P-TEFb: Finding its ways to release promoter-proximally paused RNA polymerase II. Transcription, 9(2), 88-94. https://doi.org/10.1080/21541264.2017.1281864

STRONG Kids Team (2018). Predictors and Outcomes of Mealtime Emotional Climate in Families with Preschoolers. Journal of Pediatric Psychology, 43(2), 195-206. https://doi.org/10.1093/jpepsy/jsx109

Harris, S. C., Devendran, S., Alves, J. M. P., Mythen, S. M., Hylemon, P. B., & Ridlon, J. M. (2018). Identification of a gene encoding a flavoprotein involved in bile acid metabolism by the human gut bacterium Clostridium scindens ATCC 35704. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1863(3), 276-283. https://doi.org/10.1016/j.bbalip.2017.12.001

Baumgartner, N. W., Walk, A. M., Edwards, C. G., Covello, A. R., Chojnacki, M. R., Reeser, G. E., ... Khan, N. A. (2018). Relationship Between Physical Activity, Adiposity, and Attentional Inhibition. Journal of physical activity & health, 15(3), 191-196. https://doi.org/10.1123/jpah.2017-0181

Blanchard, A. E., Liao, C., & Lu, T. (2018). Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch. Biophysical journal, 114(3), 737-746. https://doi.org/10.1016/j.bpj.2017.12.010

Dong, X., Hu, X., Chen, J., Hu, D., & Chen, L-F. (2018). BRD4 regulates cellular senescence in gastric cancer cells via E2F/miR-106b/p21 axis. Cell Death and Disease, 9(2), [203]. https://doi.org/10.1038/s41419-017-0181-6

Fang, T., Cui, Q., Huang, Y., Dong, P., Wang, H., Liu, W-T., & Ye, Q. (2018). Distribution comparison and risk assessment of free-floating and particle-attached bacterial pathogens in urban recreational water: Implications for water quality management. Science of the Total Environment, 613-614, 428-438. https://doi.org/10.1016/j.scitotenv.2017.09.008

Mackie, R. I., & Cann, I. (2018). Let them eat fruit. Nature Microbiology, 3(2), 127-129. https://doi.org/10.1038/s41564-018-0108-8

Delker, B. C., Bernstein, R. E., & Laurent, H. K. (2018). Out of harm's way: Secure versus insecure-disorganized attachment predicts less adolescent risk taking related to childhood poverty. Development and Psychopathology, 30(1), 283-296. https://doi.org/10.1017/S0954579417000621

Holscher, H. D., Taylor, A. M., Swanson, K. S., Novotny, J. A., & Baer, D. J. (2018). Almond consumption and processing affects the composition of the gastrointestinal microbiota of healthy adult men and women: A randomized controlled trial. Nutrients, 10(2), [126]. https://doi.org/10.3390/nu10020126

Pallotto, M. R., Cattai de Godoy, M. R., Holscher, H. D., Buff, P. R., & Swanson, K. S. (2018). Effects of weight loss with a moderate-protein, high-fiber diet on body composition, voluntary physical activity, and fecal microbiota of obese cats. American journal of veterinary research, 79(2), 181-190. https://doi.org/10.2460/ajvr.79.2.181

Nelson, B. W., Allen, N. B., & Laurent, H. K. (2018). Infant HPA axis as a potential mechanism linking maternal mental health and infant telomere length. Psychoneuroendocrinology, 88, 38-46. https://doi.org/10.1016/j.psyneuen.2017.11.008

Rao, C. V. (2018). Sparsity of Linear Discrete-Time Optimal Control Problems with $l-1$ Objectives. IEEE Transactions on Automatic Control, 63(2), 513-517. [7993042]. https://doi.org/10.1109/TAC.2017.2732286

Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., ... Sohn, J. H. (2018). Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus. Journal of Biotechnology, 266, 27-33. https://doi.org/10.1016/j.jbiotec.2017.12.001

Seo, S. O., Lu, T., Jin, Y-S., & Blaschek, H-P. M. (2018). Development of an oxygen-independent flavin mononucleotide-based fluorescent reporter system in Clostridium beijerinckii and its potential applications. Journal of Biotechnology, 265, 119-126. https://doi.org/10.1016/j.jbiotec.2017.11.003

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y-S., Blaschek, H-P. M., & Wang, Y. (2018). Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example. In Methods in Molecular Biology (pp. 297-325). (Methods in Molecular Biology; Vol. 1772). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7795-6_17

Naas, A. E., Solden, L. M., Norbeck, A. D., Brewer, H., Hagen, L. H., Heggenes, I. M., ... Pope, P. B. (2018). "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system. Microbiome, 6(1), [44]. https://doi.org/10.1186/s40168-018-0421-8

Sirk, S. (2018). Directed evolution of targeted recombinases for genome engineering. In Methods in Molecular Biology (pp. 89-102). (Methods in Molecular Biology; Vol. 1867). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-8799-3_7

Eckstrum, K. S., Edwards, W., Banerjee, A., Wang, W., Flaws, J. A., Katzenellenbogen, J. A., ... Raetzman, L. T. (2018). Effects of exposure to the endocrine-Disrupting chemical bisphenol a during critical windows of murine pituitary development. Endocrinology, 159(1), 119-131. https://doi.org/10.1210/en.2017-00565

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C., & Jin, Y-S. (2018). Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals. In Advances in Biochemical Engineering/Biotechnology (pp. 175-215). (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/10_2016_22

Monaco, M. H., Wang, M., Pan, X., Li, Q., Richards, J. D., Chichlowski, M., ... Donovan, S. M. (2018). Evaluation of sialyllactose supplementation of a prebiotic-containing formula on growth, intestinal development, and bacterial colonization in the neonatal piglet. Current Developments in Nutrition, 2(11), [nzy067]. https://doi.org/10.1093/cdn/nzy067

Donovan, S. M., & Hutkins, R. (2018). Introduction to the fifth global summit on the health effects of yogurt. Nutrition reviews, 76, 1-3. https://doi.org/10.1093/nutrit/nuy054

Walukiewicz, H. E., Ordal, G. W., & Rao, C. V. (2018). In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway. In Methods in Molecular Biology (pp. 95-105). (Methods in Molecular Biology; Vol. 1729). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-7577-8_10

Brooks, A. S., Yellen, J. E., Potts, R., Behrensmeyer, A. K., Deino, A. L., Leslie, D. E., ... Clark, J. B. (2018). Long-distance stone transport and pigment use in the earliest Middle Stone Age. Science, 360(6384), 90-94. https://doi.org/10.1126/science.aao2646

Oh, S., Hammes, F., & Liu, W-T. (2018). Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant. Water Research, 128, 278-285. https://doi.org/10.1016/j.watres.2017.10.054

Jagtap, S. S., & Rao, C. V. (Accepted/In press). Microbial conversion of xylose into useful bioproducts. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-018-9294-9

Kong, I. I., Turner, T. L., Kim, H., Kim, S. R., & Jin, Y. S. (2018). Phenotypic evaluation and characterization of 21 industrial Saccharomyces cerevisiae yeast strains. FEMS yeast research, 18(1). https://doi.org/10.1093/femsyr/foy001

Park, C. J., Kim, H., Jin, J., Barakat, R., Lin, P. C., Choi, J. M., & Ko, C. M. J. (2018). Porcine intestinal lymphoid tissues synthesize estradiol. Journal of Veterinary Science, 19(4), 477-482. https://doi.org/10.4142/jvs.2018.19.4.477

Barakat, R., Lin, P. C., Park, C. J., Best, C., Bakry, H. H., Abosalem, M. E., ... Ko, C. (2018). Prenatal exposure to DEHP induces neuronal degeneration and neurobehavioral abnormalities in adult male mice. Toxicological Sciences, 164(2), 439-452. https://doi.org/10.1093/toxsci/kfy103

Jagtap, S. S., & Rao, C. V. (2018). Production of d-arabitol from d-xylose by the oleaginous yeast Rhodosporidium toruloides IFO0880. Applied Microbiology and Biotechnology, 102(1), 143-151. https://doi.org/10.1007/s00253-017-8581-1

Cogan, D. P., Baraquet, C., Harwood, C. S., & Nair, S. K. (2018). Structural basis of transcriptional regulation by cour, a repressor of coumarate catabolism, in rhodopseudomonas palustris. Journal of Biological Chemistry, 293(30), 11727-11735. https://doi.org/10.1074/jbc.RA118.003561

Gu, W., Dong, S. H., Sarkar, S., Nair, S. K., & Schmidt, E. W. (2018). The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis. In B. S. Moore (Ed.), Methods in Enzymology (pp. 113-163). (Methods in Enzymology; Vol. 604). Academic Press Inc.. https://doi.org/10.1016/bs.mie.2018.03.002

Devendran, S., Mythen, S. M., & Ridlon, J. M. (2018). The desA and desB genes from Clostridium scindens ATCC 35704 encode steroid-17,20-desmolase. Journal of Lipid Research, 59(6), 1005-1014. https://doi.org/10.1194/jlr.M083949

Lee, D. G., Jeon, J. M., Yang, Y. H., Jin, Y-S., & Yoon, J. J. (Accepted/In press). The pH-stat Butyric Acid Feeding Strategy Coupled with Gas-Stripping for n-Butanol Production by Clostridium beijerinckii. Waste and Biomass Valorization. https://doi.org/10.1007/s12649-018-0461-0

Azam, M. S., & Vanderpool, C. K. (2018). Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism. Nucleic acids research, 46(5), 2585-2599. https://doi.org/10.1093/nar/gkx1286

Lane, S., Dong, J., & Jin, Y-S. (Accepted/In press). Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae. Bioresource Technology. https://doi.org/10.1016/j.biortech.2018.04.013

Dent, S. C., Hutchinson, D. L., Hedman, K. M., Fort, M. A., & Ambrose, S. H. (2018). Purification of dental calculus organic and carbonate biofractions improves correlations with bone stable isotope ratios. 65. Abstract from 2018 Annual Meeting of the American Association of Physical Anthropologists, Austin, United States. https://doi.org/10.1002/ajpa.23489