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Microbiome Metabolic Engineering: Publications

McLeod, A., Wolf, P., Chapkin, R. S., Davidson, L. A., Ivanov, I., Berbaum, M., Williams, L. R., Gaskins, H. R., Ridlon, J., Sanchez-Flack, J., Blumstein, L., Schiffer, L., Hamm, A., Cares, K., Antonic, M., Bernabe, B. P., Fitzgibbon, M., & Tussing-Humphreys, L. (2023). Design of the Building Research in CRC prevention (BRIDGE-CRC) trial: a 6-month, parallel group Mediterranean diet and weight loss randomized controlled lifestyle intervention targeting the bile acid-gut microbiome axis to reduce colorectal cancer risk among African American/Black adults with obesity. Trials, 24(1), [113].

Fridman D'Alessandro, V., D'Alessandro-Gabazza, C. N., Yasuma, T., Toda, M., Takeshita, A., Tomaru, A., Tharavecharak, S., Lasisi, I. O., Hess, R. Y., Nishihama, K., Fujimoto, H., Kobayashi, T., Cann, I., & Gabazza, E. C. (2023). Inhibition of a Microbiota-Derived Peptide Ameliorates Established Acute Lung Injury. American Journal of Pathology, 193(6), 740-754.

Cannavale, C. N., Edwards, C. G., Liu, R., Keye, S. A., Iwinski, S. J., Holscher, H. D., Renzi-Hammond, L., & Khan, N. A. (2023). Macular pigment is inversely related to circulating C-reactive protein concentrations in school-aged children. Nutrition Research, 114, 13-19.

Bailey, M. A., Thompson, S. V., Mysonhimer, A. R., Bennett, J. N., Vanhie, J. J., De Lisio, M., Burd, N. A., Khan, N. A., & Holscher, H. D. (2023). Dietary fiber intake and fecal short chain fatty acid concentrations are associated with lower plasma lipopolysaccharide-binding protein and inflammation. American Journal of Physiology - Gastrointestinal and Liver Physiology, 324(5), G369-G377.

Finet, S., He, F., Utterback, P. L., Parsons, C. M., & de Godoy, M. R. C. (2023). Nutrient profile, amino acid digestibility, true metabolizable energy and indispensable amino acid scoring of whole hemp seeds for use in canine and feline diets. Journal of animal science, [skad106].

Hughes, R. L., Pindus, D. M., Khan, N. A., Burd, N. A., & Holscher, H. D. (2023). Associations between Accelerometer-Measured Physical Activity and Fecal Microbiota in Adults with Overweight and Obesity. Medicine and Science in Sports and Exercise, 55(4), 680-689.

Watson, K. M., Gardner, I. H., Anand, S., Siemens, K. N., Sharpton, T. J., Kasschau, K. D., Dewey, E. N., Martindale, R., Gaulke, C. A., & Tsikitis, V. L. (2023). Colonic Microbial Abundances Predict Adenoma Formers. Annals of Surgery, 277(4), E817-E824.

Chembazhi, U. V., Tung, W. S., Hwang, H., Wang, Y., Lalwani, A., Nguyen, K. L., Bangru, S., Yee, D., Chin, K., Yang, J., Kalsotra, A., & Mei, W. (2023). PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression. Nucleic acids research, 51(5), 2397-2414. [gkad042].

Varadzinová, L., Varadzin, L., & Ambrose, S. H. (2023). New radiocarbon dates for postglacial reoccupation of the Sudanese Nile. Quaternary Science Reviews, 303, [107953].

Hutchinson, N. T., Wang, S. S., Dokhanchi, J., Johnson, R. W., Buford, T. W., Allen, J. M., & Woods, J. A. (2023). Effects of Broad-spectrum Antibiotic Treatment or Germ-free Status on Endurance Performance and Exercise Adaptations in Mice. Medicine and Science in Sports and Exercise, 55(2), 225-234.

Yukawa, T., Bamba, T., Matsuda, M., Yoshida, T., Inokuma, K., Kim, J., Won Lee, J., Jin, Y. S., Kondo, A., & Hasunuma, T. (2023). Enhanced production of 3,4-dihydroxybutyrate from xylose by engineered yeast via xylonate re-assimilation under alkaline condition. Biotechnology and bioengineering, 120(2), 511-523.

Splichal, I., Donovan, S. M., Kindlova, Z., Stranak, Z., Neuzil Bunesova, V., Sinkora, M., Polakova, K., Valaskova, B., & Splichalova, A. (2023). Release of HMGB1 and Toll-like Receptors 2, 4, and 9 Signaling Are Modulated by Bifidobacterium animalis subsp. lactis BB-12 and Salmonella Typhimurium in a Gnotobiotic Piglet Model of Preterm Infants. International journal of molecular sciences, 24(3), [2329].

Varadzin, L., Varadzinová, L., Abdallah, A., Abdallah, B. A., Abdalla Mohammed, M., Ambrose, S. H., Burgert, P., Černý, M., DˊErcole, G., Fuller, D. Q., Garcea, E. A. A., Hošek, J., Hošková, K., Jones, M. B., Kapustka, K., Madani Ahmed, I., McCool, J-P., Mohamed Hamdeen, H., Novák, J., ... Unger, J. (2023). The Shaqadud Archaeological Project (Sudan): exploring prehistoric cultural adaptations in the Sahelian hinterlands. Antiquity, 97(391), [e2].

Zhou, Y., Mirts, E. N., Yook, S., Waugh, M., Martini, R., Jin, Y. S., & Lu, Y. (2023). Reshaping the 2-Pyrone Synthase Active Site for Chemoselective Biosynthesis of Polyketides. Angewandte Chemie - International Edition, 62(5), [e202212440].

Shinn, L. M., Mansharamani, A., Baer, D. J., Novotny, J. A., Charron, C. S., Khan, N. A., Zhu, R., & Holscher, H. D. (2023). Fecal Metabolites as Biomarkers for Predicting Food Intake by Healthy Adults. The Journal of nutrition, 152(12), 2956-2965. [nxac195].

Holthaus, T. A., Kashi, M., Cannavale, C. N., Edwards, C. G., Aguiñaga, S., Walk, A. D. M., Burd, N. A., Holscher, H. D., & Khan, N. A. (2023). MIND Dietary Pattern Adherence Is Selectively Associated with Cognitive Processing Speed in Middle-Aged Adults. The Journal of nutrition, 152(12), 2941-2949. [nxac203].

Rigaud, S., Queffelec, A., Le Bourdonnec, F. X., Alisher Kyzy, S., Ambrose, S. H., Ledevin, R., Kurbanov, R., Buzhilova, A., Berezina, N., Ziganshin, R. H., & Shnaider, S. (2023). Exploring Hypotheses on Early Holocene Caspian Seafaring Through Personal Ornaments: A Study of Changing Styles and Symbols in Western Central Asia. Open Archaeology, 9(1), [20220289].

Lee, J. W., Bhagwat, S. S., Kuanyshev, N., Cho, Y. B., Sun, L., Lee, Y. G., Cortés-Peña, Y. R., Li, Y., Rao, C. V., Guest, J. S., & Jin, Y. S. (2023). Rewiring yeast metabolism for producing 2,3-butanediol and two downstream applications: Techno-economic analysis and life cycle assessment of methyl ethyl ketone (MEK) and agricultural biostimulant production. Chemical Engineering Journal, 451, [138886].

Deshavath, N. N., Dien, B. S., Slininger, P. J., Jin, Y-S., & Singh, V. (2023). A Chemical-Free Pretreatment for Biosynthesis of Bioethanol and Lipids from Lignocellulosic Biomass: An Industrially Relevant 2G Biorefinery Approach. Fermentation, 9(1), [5].

McMath, A. L., Iwinski, S., Shen, S., Bost, K. F., Donovan, S. M., & Khan, N. A. (2023). Adherence to screen time and physical activity guidelines is associated with executive function in US toddlers participating in the STRONG Kids 2 birth cohort study. The Journal of Pediatrics, 252, 22-30.e6.

Abdulla, S. Z., Kim, K., Azam, M. S., Golubeva, Y. A., Cakar, F., Slauch, J. M., & Vanderpool, C. K. (2023). Small RNAs Activate Salmonella Pathogenicity Island 1 by Modulating mRNA Stability through the hilD mRNA 39 Untranslated Region. Journal of bacteriology, 205(1).

Cannavale, C. N., Mysonhimer, A. R., Bailey, M. A., Cohen, N. J., Holscher, H. D., & Khan, N. A. (2023). Consumption of a fermented dairy beverage improves hippocampal-dependent relational memory in a randomized, controlled cross-over trial. Nutritional Neuroscience, 26(3), 265-274.

Vinderola, G., Cotter, P. D., Freitas, M., Gueimonde, M., Holscher, H. D., Ruas-Madiedo, P., Salminen, S., Swanson, K. S., Sanders, M. E., & Cifelli, C. J. (2023). Fermented foods: a perspective on their role in delivering biotics. Frontiers in Microbiology, 14, [1196239].

Lee, S. H., Yun, E. J., Han, N. R., Jung, I., Pelton, J. G., Lee, J-E., Kang, N. J., Jin, Y-S., & Kim, K. H. (2023). Production of Ethyl-agarobioside, a Novel Skin Moisturizer, by Mimicking the Alcoholysis from the Japanese Sake-Brewing Process. Marine Drugs, 21(6).

Mysonhimer, A. R., & Holscher, H. D. (2022). Gastrointestinal Effects and Tolerance of Nondigestible Carbohydrate Consumption. Advances in Nutrition, 13(6), 2237-2276. [nmac094].

Holscher, H. D., Chumpitazi, B. P., Dahl, W. J., Fahey, G. C., Liska, D. J., Slavin, J. L., & Verbeke, K. (2022). Perspective: Assessing Tolerance to Nondigestible Carbohydrate Consumption. Advances in Nutrition, 13(6), 2084-2097. [nmac091].

Hwang, H., Yun, S., Arcanjo, R. B., Divyanshi, Chen, S., Mei, W., Nowak, R. A., Kwon, T., & Yang, J. (2022). Regulation of RNA localization during oocyte maturation by dynamic RNA-ER association and remodeling of the ER. Cell Reports, 41(11), [111802].

Cheong, Y. E., Kim, J., Jin, Y. S., & Kim, K. H. (2022). Elucidation of the fucose metabolism of probiotic Lactobacillus rhamnosus GG by metabolomic and flux balance analyses. Journal of Biotechnology, 360, 110-116.

Lee, Y. G., Ju, Y., Sun, L., Park, S., Jin, Y. S., & Kim, S. R. (2022). Acetate-rich Cellulosic Hydrolysates and Their Bioconversion Using Yeasts. Biotechnology and Bioprocess Engineering, 27(6), 890-899.

Davis, E. W., Wong, C. P., Arnold, H. K., Kasschau, K., Gaulke, C. A., Sharpton, T. J., & Ho, E. (2022). Age and micronutrient effects on the microbiome in a mouse model of zinc depletion and supplementation. PloS one, 17(12 December), [e0275352].

Bailey, R. L., Stang, J. S., Davis, T. A., Naimi, T. S., Schneeman, B. O., Dewey, K. G., Donovan, S. M., Novotny, R., Kleinman, R. E., Taveras, E. M., Bazzano, L., Snetselaar, L. G., de Jesus, J., Casavale, K. O., Stoody, E. E., Goldman, J. D., Moshfegh, A. J., Rhodes, D. G., Herrick, K. A., ... Pannucci, T. R. (2022). Dietary and Complementary Feeding Practices of US Infants, 6 to 12 Months: A Narrative Review of the Federal Nutrition Monitoring Data. Journal of the Academy of Nutrition and Dietetics, 122(12), 2337-2345.e1.

Watson, K. M., Siemens, K. N., Anand, S., Gardner, I. H., Sharpton, T. J., Dewey, E. N., Martindale, R., Gaulke, C. A., & Tsikitis, V. L. (2022). Dietary and lifestyle associations with microbiome diversity. Gut Pathogens, 14(1), [49].

Wolf, P. G., Cowley, E. S., Breister, A., Matatov, S., Lucio, L., Polak, P., Ridlon, J. M., Gaskins, H. R., & Anantharaman, K. (2022). Diversity and distribution of sulfur metabolic genes in the human gut microbiome and their association with colorectal cancer. Microbiome, 10(1), [64].

Brown, M. D., Shinn, L. M., Reeser, G., Browning, M., Schwingel, A., Khan, N. A., & Holscher, H. D. (2022). Fecal and soil microbiota composition of gardening and non-gardening families. Scientific reports, 12(1), [1595].

D’Alessandro-Gabazza, C. N., Yasuma, T., Kobayashi, T., Toda, M., Abdel-Hamid, A. M., Fujimoto, H., Hataji, O., Nakahara, H., Takeshita, A., Nishihama, K., Okano, T., Saiki, H., Okano, Y., Tomaru, A., Fridman D’Alessandro, V., Shiraishi, M., Mizoguchi, A., Ono, R., Ohtsuka, J., ... Gabazza, E. C. (2022). Inhibition of lung microbiota-derived proapoptotic peptides ameliorates acute exacerbation of pulmonary fibrosis. Nature communications, 13(1), [1558].

Kim, J., Cheong, Y. E., Yu, S., Jin, Y. S., & Kim, K. H. (2022). Strain engineering and metabolic flux analysis of a probiotic yeast Saccharomyces boulardii for metabolizing l-fucose, a mammalian mucin component. Microbial cell factories, 21(1), [204].

Pei, S., Liu, P., Parker, D. A., Mackie, R. I., & Rao, C. V. (2022). Systems analysis of the effect of hydrogen sulfide on the growth of Methylococcus capsulatus Bath. Applied Microbiology and Biotechnology, 106(23), 7879-7890.

Gupta, V. K., Bakshi, U., Chang, D., Lee, A. R., Davis, J. M., Chandrasekaran, S., Jin, Y. S., Freeman, M. F., & Sung, J. (2022). TaxiBGC: a Taxonomy-Guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes. mSystems, 7(6).

Dodd, D., & Cann, I. (2022). Tutorial: Microbiome studies in drug metabolism. Clinical and Translational Science, 15(12), 2812-2837.

Sommer, K. M., Jespersen, J. C., Sutkus, L. T., Lee, Y., Donovan, S. M., & Dilger, R. N. (2022). Oral gamma-cyclodextrin-encapsulated tributyrin supplementation in young pigs with experimentally induced colitis. Journal of animal science, 100(11), [skac314].

Kim, M., Miller, M. J., & Stasiewicz, M. J. (2022). Perspective: Challenges with product testing in powdered infant formula. Journal of Dairy Science, 105(11), 8591-8593.

Han, N. R., Yu, S., Yun, E. J., Jin, Y. S., & Kim, K. H. (2022). Production of colanic acid hydrolysate and its use in the production of fucosylated oligosaccharides by engineered Saccharomyces cerevisiae. Process Biochemistry, 122, 332-340.

Fairfield, W. D., Minton, D. M., Elliehausen, C. J., Nichol, A. D., Cook, T. L., Rathmacher, J. A., Pitchford, L. M., Paluska, S. A., Kuchnia, A. J., Allen, J. M., & Konopka, A. R. (2022). Small-Scale Randomized Controlled Trial to Explore the Impact of β-Hydroxy-β-Methylbutyrate Plus Vitamin D3 on Skeletal Muscle Health in Middle Aged Women. Nutrients, 14(21), [4674].

Erickson, M. L., Allen, J. M., Beavers, D. P., Collins, L. M., Davidson, K. W., Erickson, K. I., Esser, K. A., Hesselink, M. K. C., Moreau, K. L., Laber, E. B., Peterson, C. A., Peterson, C. M., Reusch, J. E., Thyfault, J. P., Youngstedt, S. D., Zierath, J. R., Goodpaster, B. H., LeBrasseur, N. K., Buford, T. W., & Sparks, L. M. (2022). Understanding heterogeneity of responses to, and optimizing clinical efficacy of, exercise training in older adults: NIH NIA Workshop summary. GeroScience, 45(1), 569-589.

Kuehn, D., Zeisel, S. H., Orenstein, D. F., German, J. B., Field, C. J., Teerdhala, S., Knezevic, A., Patil, S., Donovan, S. M., & Lönnerdal, B. (2022). Effects of a Novel High-Quality Protein Infant Formula on Energetic Efficiency and Tolerance: A Randomized Trial. Journal of Pediatric Gastroenterology and Nutrition, 75(4), 521-528.

Lee, Y. G., Kim, C., Kuanyshev, N., Kang, N. K., Fatma, Z., Wu, Z. Y., Cheng, M. H., Singh, V., Yoshikuni, Y., Zhao, H., & Jin, Y. S. (2022). Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates. Journal of Agricultural and Food Chemistry, 70(38), 12085-12094.

Subramanian, S., Geng, H., Du, C., Chou, P. M., Bu, H. F., Wang, X., Swaminathan, S., Tan, S. C., Ridlon, J. M., De Plaen, I. G., & Tan, X. D. (2022). Feeding mode influences dynamic gut microbiota signatures and affects susceptibility to anti-CD3 mAb-induced intestinal injury in neonatal mice. American Journal of Physiology - Gastrointestinal and Liver Physiology, 323(3), G205-G218.

Deewan, A., Liu, J. J., Jagtap, S. S., Yun, E. J., Walukiewicz, H., Jin, Y. S., & Rao, C. V. (2022). System analysis of Lipomyces starkeyi during growth on various plant-based sugars. Applied Microbiology and Biotechnology, 106(17), 5629-5642.

Aguilar-Lopez, M., Wetzel, C., MacDonald, A., Ho, T. T. B., & Donovan, S. M. (2022). Metagenomic profile of the fecal microbiome of preterm infants consuming mother’s own milk with bovine milk–based fortifier or infant formula: a cross-sectional study. American Journal of Clinical Nutrition, 116(2), 435-445.

Liechty, J. M., Keck, A. S., Sloane, S., Donovan, S. M., & Fiese, B. H. (2022). Assessing Transdisciplinary Scholarly Development: A Longitudinal Mixed Method Graduate Program Evaluation. Innovative Higher Education, 47(4), 661-681.

Ishaq, S. L., Wissel, E. F., Wolf, P. G., Grieneisen, L., Eggleston, E. M., Mhuireach, G., Friedman, M., Lichtenwalner, A., Otero Machuca, J., Weatherford Darling, K., Pearson, A. L., Wertheim, F. S., Johnson, A. J., Hodges, L., Young, S. K., Nielsen, C. C., Kozyrskyj, A. L., MacRae, J. D., Myers, E. M., ... Hosler, S. (2022). Designing the Microbes and Social Equity Symposium: A Novel Interdisciplinary Virtual Research Conference Based on Achieving Group-Directed Outputs. Challenges, 13(2).

VanderHoek, Z. K., Browning, A. M., Washburn, Q., Kent, M. L., Sharpton, T. J., & Gaulke, C. A. (2022). Draft Genome Sequence of Plesiomonas shigelloides Strain zfcc0051 (Phylum Proteobacteria). Microbiology Resource Announcements, 11(7).

Luo, Y., Ren, W., Smidt, H., Wright, A. D. G., Yu, B., Schyns, G., McCormack, U. M., Cowieson, A. J., Yu, J., He, J., Yan, H., Wu, J., Mackie, R. I., & Chen, D. (2022). Dynamic Distribution of Gut Microbiota in Pigs at Different Growth Stages: Composition and Contribution. Microbiology Spectrum, 10(3).

Lee, Y. G., Kim, B. Y., Bae, J. M., Wang, Y., & Jin, Y. S. (2022). Genome-edited Saccharomyces cerevisiae strains for improving quality, safety, and flavor of fermented foods. Food Microbiology, 104, [103971].

Davis, E. C., Wang, M., & Donovan, S. M. (2022). Microbial Interrelationships across Sites of Breastfeeding Mothers and Infants at 6 Weeks Postpartum. Microorganisms, 10(6).

Bode, L., & Donovan, S. M. (2022). Fructooligosaccharides are not the same as Fucosylated Human Milk Oligosaccharides. Advances in Nutrition, 13(3), 972-973.

Cerqueira, F. M., Photenhauer, A. L., Doden, H. L., Brown, A. N., Abdel-Hamid, A. M., Moraïs, S., Bayer, E. A., Wawrzak, Z., Cann, I., Ridlon, J. M., Hopkins, J. B., & Koropatkin, N. M. (2022). Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome. Journal of Biological Chemistry, 298(5), [101896].

Yuan, F., Sharma, J., Nanjappa, S. G., Gaulke, C. A., & Fang, Y. (2022). Effect of Killed PRRSV Vaccine on Gut Microbiota Diversity in Pigs. Viruses, 14(5), [1081].

Agrawal, R. M., Miller, M. J., Singh, V., Stein, H. H., & Takhar, P. S. (2022). Enzymatic hydrolysis and fermentation of soy flour to produce ethanol and soy protein concentrate with increased polyphenols. JAOCS, Journal of the American Oil Chemists' Society, 99(5), 379-391.

Jagtap, S. S., Liu, J. J., Walukiewicz, H. E., Pangilinan, J., Lipzen, A., Ahrendt, S., Koriabine, M., Cobaugh, K., Salamov, A., Yoshinaga, Y., Ng, V., Daum, C., Grigoriev, I. V., Slininger, P. J., Dien, B. S., Jin, Y. S., & Rao, C. V. (2022). Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates. Microbiology Resource Announcements, 11(5).

Shin, J., Miller, M., & Wang, Y. C. (2022). Recent advances in CRISPR-based systems for the detection of foodborne pathogens. Comprehensive Reviews in Food Science and Food Safety, 21(3), 3010-3029.

Sutkus, L. T., Joung, S., Hirvonen, J., Jensen, H. M., Ouwehand, A. C., Mukherjea, R., Donovan, S. M., & Dilger, R. N. (2022). Influence of 2′-Fucosyllactose and Bifidobacterium longum Subspecies infantis Supplementation on Cognitive and Structural Brain Development in Young Pigs. Frontiers in Neuroscience, 16, [860368].

Iwazaki, E., Lee, A. H., Kruis, A. M., Phungviwatnikul, T., Valentine, H., Arend, L. S., Knox, R. V., De Godoy, M. R. C., & Swanson, K. S. (2022). Effects of a high-protein, high-fiber diet rich in antioxidants and l-carnitine on body weight, body composition, metabolic status, and physical activity levels of cats after spay surgery. Journal of animal science, 100(4), [skac104].

Finet, S., He, F., Clark, L. V., & De Godoy, M. R. C. (2022). Functional properties of miscanthus fiber and prebiotic blends in extruded canine diets. Journal of animal science, 100(4), [skac078].

Spencer, T. E., Wells, K. D., Lee, K., Telugu, B. P., Hansen, P. J., Bartol, F. F., Blomberg, L., Schook, L. B., Dawson, H., Lunney, J. K., Driver, J. P., Davis, T. A., Donovan, S. M., Dilger, R. N., Saif, L. J., Moeser, A., McGill, J. L., Smith, G., & Ireland, J. J. (2022). Future of biomedical, agricultural, and biological systems research using domesticated animals. Biology of reproduction, 106(4), 629-638.

Zhao, A., Jeffery, E. H., & Miller, M. J. (2022). Is Bitterness Only a Taste? The Expanding Area of Health Benefits of Brassica Vegetables and Potential for Bitter Taste Receptors to Support Health Benefits. Nutrients, 14(7), [1434].

Do, S., Koutsos, E. A., Mccomb, A., Phungviwatnikul, T., De Godoy, M. R. C., & Swanson, K. S. (2022). Palatability and apparent total tract macronutrient digestibility of retorted black soldier fly larvae-containing diets and their effects on the fecal characteristics of cats consuming them. Journal of animal science, 100(4), [skac068].

Kang, N. K., Kim, M., Baek, K., Chang, Y. K., Ort, D. R., & Jin, Y. S. (2022). Photoautotrophic organic acid production: Glycolic acid production by microalgal cultivation. Chemical Engineering Journal, 433, [133636].

Abdel-Hamid, A. M., D'Alessandro-Gabazza, C. N., Yasuma, T., Walden, K. K. O., Fields, C. J., Gabazza, E. C., & Cann, I. (2022). Complete Genome Sequences of Three Staphylococcus haemolyticus Strains Isolated from the Lung of a TGFb1 Transgenic Mouse with Lung Fibrosis. Microbiology Resource Announcements, 11(4).

Ibarra-Sánchez, L. A., Miller, M. J., & Holle, M. J. (2022). Recent Advances in Listeria Mitigation for Queso Fresco. ACS Food Science and Technology, 2(3), 425-434.

Lipson, M., Sawchuk, E. A., Thompson, J. C., Oppenheimer, J., Tryon, C. A., Ranhorn, K. L., de Luna, K. M., Sirak, K. A., Olalde, I., Ambrose, S. H., Arthur, J. W., Arthur, K. J. W., Ayodo, G., Bertacchi, A., Cerezo-Román, J. I., Culleton, B. J., Curtis, M. C., Davis, J., Gidna, A. O., ... Prendergast, M. E. (2022). Ancient DNA and deep population structure in sub-Saharan African foragers. Nature, 603(7900), 290-296.

Ellis, J. L., Wang, M., Fu, X., Fields, C. J., Donovan, S. M., & Booth, S. L. (2022). Feeding Practice and Delivery Mode Are Determinants of Vitamin K in the Infant Gut: An Exploratory Analysis. Current Developments in Nutrition, 6(3), [nzac019].

Moreno, L. A., Meyer, R., Donovan, S. M., Goulet, O., Haines, J., Kok, F. J., & Van't Veer, P. (2022). Perspective: Striking a Balance between Planetary and Human Health-Is There a Path Forward? Advances in Nutrition, 13(2), 355-375.

Hughes, R. L., Alvarado, D. A., Swanson, K. S., & Holscher, H. D. (2022). The Prebiotic Potential of Inulin-Type Fructans: A Systematic Review. Advances in Nutrition, 13(2), 492-529.

Kwak, S., Robinson, S. J., Lee, J. W., Lim, H., Wallace, C. L., & Jin, Y. S. (2022). Dissection and enhancement of prebiotic properties of yeast cell wall oligosaccharides through metabolic engineering. Biomaterials, 282, [121379].

Leahy, S. C., Janssen, P. H., Attwood, G. T., Mackie, R. I., McAllister, T. A., & Kelly, W. J. (2022). Electron flow: key to mitigating ruminant methanogenesis. Trends in Microbiology, 30(3), 209-212.

Kang, N. K., Lee, J. W., Ort, D. R., & Jin, Y. S. (2022). L-malic Acid Production from Xylose by Engineered Saccharomyces Cerevisiae. Biotechnology Journal, 17(3), [2000431].

Seo, S. O., & Jin, Y. S. (2022). Next-Generation Genetic and Fermentation Technologies for Safe and Sustainable Production of Food Ingredients: Colors and Flavorings. Annual Review of Food Science and Technology, 13, 463-488.

Ridlon, J. M. (Ed.) (2022). Microbial Impact on Cholesterol and Bile Acid Metabolism. Microorganisms, 10(2).

Ridlon, J. M. (2022). Special Issue: Microbial Impact on Cholesterol and Bile Acid Metabolism. Microorganisms, 10(2), [477].

Kelly, V. W., & Sirk, S. J. (2022). Short FcRn-Binding Peptides Enable Salvage and Transcytosis of scFv Antibody Fragments. ACS chemical biology, 17(2), 404-413.

Procópio, D. P., Kendrick, E., Goldbeck, R., Damasio, A. R. D. L., Franco, T. T., Leak, D. J., Jin, Y. S., & Basso, T. O. (2022). Xylo-Oligosaccharide Utilization by Engineered Saccharomyces cerevisiae to Produce Ethanol. Frontiers in Bioengineering and Biotechnology, 10, [825981].

Reilly, L. M., Hu, Y., Von Schaumburg, P. C., De Oliveira, M. R. D., He, F., Rodriguez-Zas, S. L., Southey, B. R., Parsons, C. M., Utterback, P., Lambrakis, L., Da Costa, D. V., Bertechini, A. G., Saad, F. M. O. B., & De Godoy, M. R. C. (2022). Chemical composition of selected insect meals and their effect on apparent total tract digestibility, fecal metabolites, and microbiota of adult cats fed insect-based retorted diets. Journal of animal science, 100(2), [skac024].

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