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Carl R. Woese Institute for Genomic Biology

Where Science Meets Society

Research Areas

Tapsin, S., Sun, M., Shen, Y., Zhang, H., Lim, X. N., Susanto, T. T., ... Wan, Y. (2018). Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes. Nature Communications, 9(1), [1289]. DOI: 10.1038/s41467-018-03675-1

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A., & Cunningham, B. T. (2018). Quantitative analysis of focal adhesion dynamics using photonic resonator outcoupler microscopy (PROM). Light: Science and Applications, 7(1), [7538]. DOI: 10.1038/s41377-018-0001-5

Hudson, G. A., & Mitchell, D. A. (2018). RiPP antibiotics: biosynthesis and engineering potential. Current Opinion in Microbiology, 45, 61-69. DOI: 10.1016/j.mib.2018.02.010

Bao, Z., HamediRad, M., Xue, P., Xiao, H., Tasan, I., Chao, R., ... Zhao, H. (2018). Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision. Nature biotechnology, 36(6), 505-508. DOI: 10.1038/nbt.4132

Gerlt, J. A. (2018). Special Issue: Current Topics in Mechanistic Enzymology. Biochemistry, 57(22), 3085-3086. DOI: 10.1021/acs.biochem.8b00585

Carter, M. S., Zhang, X., Huang, H., Bouvier, J. T., Francisco, B. S., Vetting, M. W., ... Gerlt, J. A. (Accepted/In press). Functional assignment of multiple catabolic pathways for d-apiose. Nature chemical biology, 1-10. DOI: 10.1038/s41589-018-0067-7

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L., & Cunningham, B. T. (2018). Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing. Chemosensors, 6(2), [13]. DOI: 10.3390/chemosensors6020013

Lian, J., Bao, Z., Hu, S., & Zhao, H. (2018). Engineered CRISPR/Cas9 system for multiplex genome engineering of polyploid industrial yeast strains. Biotechnology and bioengineering, 115(6), 1630-1635. DOI: 10.1002/bit.26569

HamediRad, M., Lian, J., Li, H., & Zhao, H. (2018). RNAi assisted genome evolution unveils yeast mutants with improved xylose utilization. Biotechnology and bioengineering, 115(6), 1552-1560. DOI: 10.1002/bit.26570

Checco, J. W., Zhang, G., Yuan, W. D., Yu, K., Yin, S. Y., Roberts-Galbraith, R. H., ... Sweedler, J. V. (2018). Molecular and Physiological Characterization of a Receptor for d -Amino Acid-Containing Neuropeptides. ACS chemical biology, 13(5), 1343-1352. DOI: 10.1021/acschembio.8b00167

Anapindi, K. D. B., Romanova, E. V., Southey, B. R., & Sweedler, J. V. (2018). Peptide identifications and false discovery rates using different mass spectrometry platforms. Talanta, 182, 456-463. DOI: 10.1016/j.talanta.2018.01.062

Hegemann, J. D., & Van Der Donk, W. A. (2018). Investigation of Substrate Recognition and Biosynthesis in Class IV Lanthipeptide Systems. Journal of the American Chemical Society, 140(17), 5743-5754. DOI: 10.1021/jacs.8b01323

Sweedler, J. V. (2018). A Resource for Our Reagents: ACS Reagent Chemicals. Analytical chemistry, 90(9). DOI: 10.1021/acs.analchem.8b01729

Li, L., Andrén, P. E., & Sweedler, J. V. (2018). Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS. Journal of the American Society for Mass Spectrometry, 29(5), 801-806. DOI: 10.1007/s13361-018-1939-5

Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., ... Sweedler, J. V. (2018). Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry. Journal of the American Society for Mass Spectrometry, 29(5), 923-934. DOI: 10.1007/s13361-018-1898-x

Hu, Z., Dong, H., Ma, J. C., Yu, Y., Li, K. H., Guo, Q. Q., ... Wang, H. (2018). Novel Xanthomonas campestris long-chain-specific 3-oxoacyl- acyl carrier protein reductase involved in diffusible signal factor synthesis. mBio, 9(3), [e00596-18]. DOI: 10.1128/mBio.00596-18

Dunham, S. J. B., Ellis, J. F., Baig, N. F., Morales-Soto, N., Cao, T., Shrout, J. D., ... Sweedler, J. V. (2018). Quantitative SIMS Imaging of Agar-Based Microbial Communities. Analytical chemistry, 90(9), 5654-5663. DOI: 10.1021/acs.analchem.7b05180

Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., ... Murphy, D. (2018). The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system. Neurobiology of Aging, 65, 178-191. DOI: 10.1016/j.neurobiolaging.2018.01.008

Hetrick, K. J., Walker, M. C., & Van Der Donk, W. A. (2018). Development and Application of Yeast and Phage Display of Diverse Lanthipeptides. ACS Central Science, 4(4), 458-467. DOI: 10.1021/acscentsci.7b00581

Parkinson, E. I., Tryon, J. H., Goering, A. W., Ju, K. S., McClure, R. A., Kemball, J. D., ... Metcalf, W. W. (2018). Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics. ACS chemical biology, 13(4), 1029-1037. DOI: 10.1021/acschembio.7b01089

Kakkar, N., Perez, J. G., Liu, W. R., Jewett, M. C., & Van Der Donk, W. A. (2018). Incorporation of Nonproteinogenic Amino Acids in Class i and II Lantibiotics. ACS chemical biology, 13(4), 951-957. DOI: 10.1021/acschembio.7b01024

Limsakul, P., Peng, Q., Wu, Y., Allen, M. E., Liang, J., Remacle, A. G., ... Wang, Y. (2018). Directed Evolution to Engineer Monobody for FRET Biosensor Assembly and Imaging at Live-Cell Surface. Cell Chemical Biology, 25(4), 370-379.e4. DOI: 10.1016/j.chembiol.2018.01.002

Petronikolou, N., Hollatz, A. J., Schuler, M. A., & Nair, S. K. (2018). Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside. ChemBioChem, 19(8), 784-788. DOI: 10.1002/cbic.201700679

Trobe, M., & Burke, M. D. (2018). The Molecular Industrial Revolution: Automated Synthesis of Small Molecules. Angewandte Chemie - International Edition, 57(16), 4192-4214. DOI: 10.1002/anie.201710482

Yang, N., Anapindi, K. D. B., Rubakhin, S. S., Wei, P., Yu, Q., Li, L., ... Sweedler, J. V. (2018). Neuropeptidomics of the Rat Habenular Nuclei. Journal of Proteome Research, 17(4), 1463-1473. DOI: 10.1021/acs.jproteome.7b00811

Yang, X., Lennard, K. R., He, C., Walker, M. C., Ball, A. T., Doigneaux, C., ... Van Der Donk, W. A. (2018). A lanthipeptide library used to identify a protein-protein interaction inhibitor article. Nature chemical biology, 14(4), 375-380. DOI: 10.1038/s41589-018-0008-5

Sun, H., Zhang, H., Ang, E. L., & Zhao, H. (2018). Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates. Bioorganic and Medicinal Chemistry, 26(7), 1275-1284. DOI: 10.1016/j.bmc.2017.06.043

Wei, Y., Ang, E. L., & Zhao, H. (2018). Recent developments in the application of P450 based biocatalysts. Current Opinion in Chemical Biology, 43, 1-7. DOI: 10.1016/j.cbpa.2017.08.006

Della Ripa, L. A., Petros, Z. A., Cioffi, A. G., Piehl, D. W., Courtney, J. M., Burke, M. D., & Rienstra, C. M. (2018). Solid-State NMR of highly 13C-enriched cholesterol in lipid bilayers. Methods, 138-139, 47-53. DOI: 10.1016/j.ymeth.2018.01.008

Morita, M., Hao, Y., Jokela, J., Sardar, D., Lin, Z., Sivonen, K., ... Schmidt, E. W. (Accepted/In press). Posttranslational Tyrosine Geranylation in Cyanobactin Biosynthesis. Unknown Journal. DOI: 10.1021/jacs.8b03137

Mahanta, N., Liu, A., Dong, S., Nair, S. K., & Mitchell, D. A. (2018). Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proceedings of the National Academy of Sciences of the United States of America, 115(12), 3030-3035. DOI: 10.1073/pnas.1722324115

Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., ... Kelleher, N. L. (2018). Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains. Analytical chemistry, 90(6), 3802-3810. DOI: 10.1021/acs.analchem.7b04108

Ulrich, E. C., Bougioukou, D. J., & Van Der Donk, W. A. (2018). Investigation of Amide Bond Formation during Dehydrophos Biosynthesis. ACS chemical biology, 13(3), 537-541. DOI: 10.1021/acschembio.7b00949

Sweedler, J. V. (2018). Who Are Your Coauthors? Make Sure to Follow Appropriate Practices. Analytical Chemistry, 90(5), 2977-2978. DOI: 10.1021/acs.analchem.8b00785

Wang, Y., Ren, H., & Zhao, H. (2018). Expanding the boundary of biocatalysis: design and optimization of in vitro tandem catalytic reactions for biochemical production. Critical Reviews in Biochemistry and Molecular Biology, 53(2), 115-129. DOI: 10.1080/10409238.2018.1431201

Sweedler, J. V. (2018). The ACS Measurement Journals, the Analytical Division, and Pittcon 2018: A Busy Four Days. Analytical Chemistry, 90(4). DOI: 10.1021/acs.analchem.8b00575

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., ... Wysocki, V. H. (2018). How many human proteoforms are there? Nature chemical biology, 14(3), 206-214. DOI: 10.1038/nchembio.2576

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., ... Sweedler, J. V. (Accepted/In press). A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms. Analytical chemistry. DOI: 10.1021/acs.analchem.8b00560

Wan, Y., Carlson, J. A., Al-Mulla, S. A., Peng, W., Long, K. D., Kesler, B. A., ... Cunningham, B. T. (2018). Integrated spectroscopic analysis system with low vertical height for measuring liquid or solid assays. Sensors and Actuators, B: Chemical, 255, 935-943. DOI: 10.1016/j.snb.2017.08.126

Besold, A. N., Gilston, B. A., Radin, J. N., Ramsoomair, C., Culbertson, E. M., Li, C. X., ... Culotta, V. C. (2018). Role of calprotectin in withholding zinc and copper from Candida albicans. Infection and Immunity, 86(2), [e00779-17]. DOI: 10.1128/IAI.00779-17

Shi, S., Ang, E. L., & Zhao, H. (Accepted/In press). In vivo biosensors: mechanisms, development, and applications. Journal of Industrial Microbiology and Biotechnology, 1-26. DOI: 10.1007/s10295-018-2004-x

Cao, X., Hong, Y., Zhu, L., Hu, Y., & Cronan, J. E. (2018). Development and retention of a primordial moonlighting pathway of protein modification in the absence of selection presents a puzzle. Proceedings of the National Academy of Sciences of the United States of America, 115(4), 647-655. DOI: 10.1073/pnas.1718653115

Qi, M., Philip, M. C., Yang, N., & Sweedler, J. V. (2018). Single Cell Neurometabolomics. ACS Chemical Neuroscience, 9(1), 40-50. DOI: 10.1021/acschemneuro.7b00304

Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., ... Bashir, R. (2018). Mobile biosensing using the sensing capabilities of smartphone cameras. In 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017 (Vol. 2018-January, pp. 1-3). Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/IMWS-AMP.2017.8247439

Manandhar, M., & Cronan, J. E. (2018). A canonical biotin synthesis enzyme, 8-amino-7- oxononanoate synthase (BioF), utilizes different acyl chain donors in Bacillus subtilis and Escherichia coli. Applied and Environmental Microbiology, 84(1), [e02084-17]. DOI: 10.1128/AEM.02084-17

Kelliher, J. L., Radin, J. N., Grim, K. P., Solórzano, P. K. P., Degnan, P. H., & Kehl-Fie, T. E. (2018). Acquisition of the phosphate transporter NptA enhances Staphylococcus aureus pathogenesis by improving phosphate uptake in divergent environments. Infection and Immunity, 86(1), [e00631-17]. DOI: 10.1128/IAI.00631-17

Lian, J., Hamedirad, M., & Zhao, H. (Accepted/In press). Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System. Biotechnology Journal. DOI: 10.1002/biot.201700601

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V., & Shen, M. (2018). A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes. Chemical Science, 9(22), 4937-4941. DOI: 10.1039/c8sc01131a

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L., & Sweedler, J. V. (2018). Bioinformatics for prohormone and neuropeptide discovery. In Methods in Molecular Biology (pp. 71-96). (Methods in Molecular Biology; Vol. 1719). Humana Press Inc.. DOI: 10.1007/978-1-4939-7537-2_5

Schultz, C., Lian, J., & Zhao, H. (Accepted/In press). Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion. Methods in enzymology. DOI: 10.1016/bs.mie.2018.04.010

Tai, H. C., Checco, J. W., & Sweedler, J. V. (2018). Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS. In Methods in Molecular Biology (pp. 107-118). (Methods in Molecular Biology; Vol. 1719). Humana Press Inc.. DOI: 10.1007/978-1-4939-7537-2_7

Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., ... Sweedler, J. V. (Accepted/In press). Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins. ChemPhysChem. DOI: 10.1002/cphc.201701364

Peh, J., Boudreau, M. W., Smith, H. M., & Hergenrother, P. J. (Accepted/In press). Overcoming Resistance to Targeted Anticancer Therapies through Small-Molecule-Mediated MEK Degradation. Cell Chemical Biology. DOI: 10.1016/j.chembiol.2018.05.008

Garcia-Ruiz, E., HamediRad, M., & Zhao, H. (2018). Pathway design, engineering, and optimization. In Advances in Biochemical Engineering/Biotechnology (Advances in Biochemical Engineering/Biotechnology; Vol. 162). Springer Science and Business Media Deutschland GmbH. DOI: 10.1007/10_2016_12

Goettge, M. N., Cioni, J. P., Ju, K. S., Pallitsch, K., & Metcalf, W. W. (2018). PcxL and HpxL are flavin-dependent, oxime-forming N-oxidases in phosphonocystoximic acid biosynthesis in Streptomyces. Journal of Biological Chemistry, 293(18), 6859-6868. DOI: 10.1074/jbc.RA118.001721

Cunningham, B. T., Liu, J. N., Huang, Q., Canady, T., Long, K. D., Li, N., ... Singamaneni, S. (2018). Photonic crystal resonant coupling to nanoantennas and applications for digital resolution biosensing. In Microscopy Histopathology and Analytics, MICROSCOPY 2018 (Vol. Part F89-MICROSCOPY 2018). OSA - The Optical Society. DOI: 10.1364/MICROSCOPY.2018.MW2A.3

Lian, J., Mishra, S., & Zhao, H. (Accepted/In press). Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications. Metabolic Engineering. DOI: 10.1016/j.ymben.2018.04.011

Zheng, X., Andruska, N., Lambrecht, M. J., He, S., Parissenti, A., Hergenrother, P. J., ... Shapiro, D. J. (2018). Targeting multidrug-resistant ovarian cancer through estrogen receptor a dependent ATP depletion caused by hyperactivation of the unfolded protein response. Oncotarget, 9(19), 14741-14753. DOI: 10.18632/oncotarget.10819

Gu, W., Dong, S. H., Sarkar, S., Nair, S. K., & Schmidt, E. W. (2018). The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis. In Marine Enzymes and Specialized Metabolism - Part A (pp. 113-163). (Methods in Enzymology; Vol. 604). Academic Press Inc.. DOI: 10.1016/bs.mie.2018.03.002

Bobeica, S. C., & van der Donk, W. A. (2018). The Enzymology of Prochlorosin Biosynthesis. In Marine Enzymes and Specialized Metabolism - Part A (pp. 165-203). (Methods in Enzymology; Vol. 604). Academic Press Inc.. DOI: 10.1016/bs.mie.2018.01.038

Lehmann, J. W., Blair, D. J., & Burke, M. D. (2018). Towards the generalized iterative synthesis of small molecules. Nature Reviews Chemistry, 2(2), [0115]. DOI: 10.1038/s41570-018-0115 

Zhang, Z., Mahanta, N., Hudson, G. A., Mitchell, D. A., & Van Der Donk, W. A. (2017). Mechanism of a Class C Radical S-Adenosyl- l -methionine Thiazole Methyl Transferase. Journal of the American Chemical Society, 139(51), 18623-18631. DOI: 10.1021/jacs.7b10203

Schwalen, C. J., Hudson, G. A., Kosol, S., Mahanta, N., Challis, G. L., & Mitchell, D. A. (2017). In Vitro Biosynthetic Studies of Bottromycin Expand the Enzymatic Capabilities of the YcaO Superfamily. Journal of the American Chemical Society, 139(50), 18154-18157. DOI: 10.1021/jacs.7b09899

Biswas, S., Garcia De Gonzalo, C. V., Repka, L. M., & Van Der Donk, W. A. (2017). Structure-Activity Relationships of the S-Linked Glycocin Sublancin. ACS Chemical Biology, 12(12), 2965-2969. DOI: 10.1021/acschembio.7b00819

Liu, J. N., Huang, Q., Liu, K. K., Singamaneni, S., & Cunningham, B. T. (2017). Nanoantenna-Microcavity Hybrids with Highly Cooperative Plasmonic-Photonic Coupling. Nano Letters, 17(12), 7569-7577. DOI: 10.1021/acs.nanolett.7b03519

Born, D. A., Ulrich, E. C., Ju, K. S., Peck, S. C., Van Der Donk, W. A., & Drennan, C. L. (2017). Structural basis for methylphosphonate biosynthesis. Science, 358(6368), 1336-1339. DOI: 10.1126/science.aao3435

Yang, N., Anapindi, K. D. B., Romanova, E. V., Rubakhin, S. S., & Sweedler, J. V. (2017). Improved identification and quantitation of mature endogenous peptides in the rodent hypothalamus using a rapid conductive sample heating system. Analyst, 142(23), 4476-4485. DOI: 10.1039/c7an01358b

Sweedler, J. V. (2017). 2018: The 90th Volume of Analytical Chemistry and Still Growing. Analytical Chemistry, 89(23). DOI: 10.1021/acs.analchem.7b04750

Cogan, D. P., Hudson, G. A., Zhang, Z., Pogorelov, T. V., Van Der Donk, W. A., Mitchell, D. A., & Nair, S. K. (2017). Structural insights into enzymatic [4+2] aza-cycloaddition in thiopeptide antibiotic biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 114(49), 12928-12933. DOI: 10.1073/pnas.1716035114

Ren, H., Wang, B., & Zhao, H. (2017). Breaking the silence: new strategies for discovering novel natural products. Current Opinion in Biotechnology, 48, 21-27. DOI: 10.1016/j.copbio.2017.02.008

Lian, J., Hamedirad, M., Hu, S., & Zhao, H. (2017). Combinatorial metabolic engineering using an orthogonal tri-functional CRISPR system. Nature Communications, 8(1), [1688]. DOI: 10.1038/s41467-017-01695-x

Shi, S., Choi, Y. W., Zhao, H., Tan, M. H., & Ang, E. L. (2017). Discovery and engineering of a 1-butanol biosensor in Saccharomyces cerevisiae. Bioresource Technology, 245, 1343-1351. DOI: 10.1016/j.biortech.2017.06.114

Cao, X., Zhu, L., Hu, Z., & Cronan, J. E. (2017). Expression and activity of the BioH esterase of biotin synthesis is independent of genome context. Scientific Reports, 7(1), [2141]. DOI: 10.1038/s41598-017-01490-0

Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., ... Bashir, R. (2017). Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care. Biomedical Microdevices, 19(4), [73]. DOI: 10.1007/s10544-017-0209-9

Inan, H., Wang, S., Inci, F., Baday, M., Zangar, R., Kesiraju, S., ... Demirci, U. (2017). Isolation, Detection, and Quantification of Cancer Biomarkers in HPV-Associated Malignancies. Scientific Reports, 7(1), [3322]. DOI: 10.1038/s41598-017-02672-6

Race, C. M., Kwon, L. E., Foreman, M. T., Huang, Q., Inan, H., Kesiraju, S., ... Cunningham, B. T. (2017). An Automated Microfluidic Assay for Photonic Crystal Enhanced Detection and Analysis of an Antiviral Antibody Cancer Biomarker in Serum. IEEE Sensors Journal. DOI: 10.1109/JSEN.2017.2777529

Patel, A. V., Kawai, T., Wang, L., Rubakhin, S. S., & Sweedler, J. V. (2017). Chiral Measurement of Aspartate and Glutamate in Single Neurons by Large-Volume Sample Stacking Capillary Electrophoresis. Analytical Chemistry, 89(22), 12375-12382. DOI: 10.1021/acs.analchem.7b03435

Shi, S., & Zhao, H. (2017). Metabolic engineering of oleaginous yeasts for production of fuels and chemicals. Frontiers in Microbiology, 8(NOV), [2185]. DOI: 10.3389/fmicb.2017.02185

Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., ... Rogers, J. A. (2017). Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots. Proceedings of the National Academy of Sciences of the United States of America, 114(45), E9455-E9464. DOI: 10.1073/pnas.1713805114

Wan, Y., Krueger, N. A., Ocier, C. R., Su, P., Braun, P. V., & Cunningham, B. T. (2017). Resonant Mode Engineering of Photonic Crystal Sensors Clad with Ultralow Refractive Index Porous Silicon Dioxide. Advanced Optical Materials, 5(21), [1700605]. DOI: 10.1002/adom.201700605

Doǧanay, S., Lee, M. Y., Baum, A., Peh, J., Hwang, S. Y., Yoo, J. Y., ... Ha, T. (2017). Single-cell analysis of early antiviral gene expression reveals a determinant of stochastic: IFNB1 expression. Integrative Biology (United Kingdom), 9(11), 857-867. DOI: 10.1039/c7ib00146k

See, G. G., Gao, A., Xu, L., Nuzzo, R., Gong, S., & Cunningham, B. T. (2017). Quantum dot emission modulation using piezoelectric photonic crystal MEMS resonators. Optics Express, 25(21), 25831-25841. DOI: 10.1364/OE.25.025831

Peng, H., Zhang, Y., Palmer, L. D., Kehl-Fie, T. E., Skaar, E. P., Trinidad, J. C., & Giedroc, D. P. (2017). Hydrogen Sulfide and Reactive Sulfur Species Impact Proteome S-Sulfhydration and Global Virulence Regulation in Staphylococcus aureus. ACS Infectious Diseases, 3(10), 744-755. DOI: 10.1021/acsinfecdis.7b00090

Mahanta, N., Hudson, G. A., & Mitchell, D. A. (2017). Radical S-Adenosylmethionine Enzymes Involved in RiPP Biosynthesis. Biochemistry, 56(40), 5229-5244. DOI: 10.1021/acs.biochem.7b00771

Sweedler, J. V. (2017). The Analytical Chemistry Award Winners. Analytical Chemistry, 89(19). DOI: 10.1021/acs.analchem.7b03730

Peterson, R. D., Wilund, K. R., Cunningham, B. T., & Andrade, J. E. (2017). Comparison of methods study between a photonic crystal biosensor and certified ELISA to measure biomarkers of iron deficiency in chronic kidney disease patients. Sensors (Switzerland), 17(10), [2203]. DOI: 10.3390/s17102203

Tasan, I., & Zhao, H. (2017). Targeting Specificity of the CRISPR/Cas9 System. ACS Synthetic Biology, 6(9), 1609-1613. DOI: 10.1021/acssynbio.7b00270

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., ... Nuzzo, R. G. (2017). 3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response. ACS Applied Materials and Interfaces, 9(36), 30318-30328. DOI: 10.1021/acsami.7b06742

Hu, X., Dong, S. H., Chen, J., Zhou, X. Z., Chen, R., Nair, S., ... Chen, L. F. (2017). Prolyl isomerase PIN1 regulates the stability, transcriptional activity and oncogenic potential of BRD4. Oncogene, 36(36), 5177-5188. DOI: 10.1038/onc.2017.137

Sweedler, J. V. (2017). From the Great to the Scam, Carefully Select Your Scientific Conferences. Analytical Chemistry, 89(17). DOI: 10.1021/acs.analchem.7b03170

Kang, S., Badea, A., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A., & Nuzzo, R. G. (2017). Quantitative Reflection Imaging for the Morphology and Dynamics of Live Aplysia californica Pedal Ganglion Neurons Cultured on Nanostructured Plasmonic Crystals. Langmuir, 33(35), 8640-8650. DOI: 10.1021/acs.langmuir.6b04454

Comi, T. J., Neumann, E. K., Do, T. D., & Sweedler, J. V. (2017). microMS: A Python Platform for Image-Guided Mass Spectrometry Profiling. Journal of the American Society for Mass Spectrometry, 28(9), 1919-1928. DOI: 10.1007/s13361-017-1704-1

Grim, K. P., San Francisco, B., Radin, J. N., Brazel, E. B., Kelliher, J. L., Párraga Solórzano, P. K., ... Kehl-Fie, T. E. (2017). The metallophore staphylopine enables staphylococcus aureus to compete with the host for zinc and overcome nutritional immunity. mBio, 8(5), [e01281-17]. DOI: 10.1128/mBio.01281-17

Gerlt, J. A. (2017). Genomic Enzymology: Web Tools for Leveraging Protein Family Sequence-Function Space and Genome Context to Discover Novel Functions. Biochemistry, 56(33), 4293-4308. DOI: 10.1021/acs.biochem.7b00614

Dong, S. H., Frane, N. D., Christensen, Q. H., Greenberg, E. P., Nagarajan, R., & Nair, S. K. (2017). Molecular basis for the substrate specificity of quorum signal synthases. Proceedings of the National Academy of Sciences of the United States of America, 114(34), 9092-9097. DOI: 10.1073/pnas.1705400114

Ren, H., Hu, P., & Zhao, H. (2017). A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae. Biotechnology and Bioengineering, 114(8), 1847-1854. DOI: 10.1002/bit.26309

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Sweedler, J. V. (2017). Making the Editor's Job Easier: Let Us Know about Prior Submissions and Related Manuscripts. Analytical Chemistry, 89(8), 4329. DOI: 10.1021/acs.analchem.7b01206

Wang, Y., Bartlett, M. J., Denard, C. A., Hartwig, J. F., & Zhao, H. (2017). Combining Rh-Catalyzed Diazocoupling and Enzymatic Reduction to Efficiently Synthesize Enantioenriched 2-Substituted Succinate Derivatives. ACS Catalysis, 7(4), 2548-2552. DOI: 10.1021/acscatal.7b00254

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Mahanta, N., Zhang, Z., Hudson, G. A., Van Der Donk, W. A., & Mitchell, D. A. (2017). Reconstitution and Substrate Specificity of the Radical S-Adenosyl-methionine Thiazole C-Methyltransferase in Thiomuracin Biosynthesis. Journal of the American Chemical Society, 139(12), 4310-4313. DOI: 10.1021/jacs.7b00693

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Garcia, Y. M., Barwinska-Sendra, A., Tarrant, E., Skaar, E. P., Waldron, K. J., & Kehl-Fie, T. E. (2017). A Superoxide Dismutase Capable of Functioning with Iron or Manganese Promotes the Resistance of Staphylococcus aureus to Calprotectin and Nutritional Immunity. PLoS Pathogens, 13(1), [e1006125]. DOI: 10.1371/journal.ppat.1006125

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Huo, L., Ökesli, A., Zhao, M., & van der Donk, W. A. (2017). Insights into the biosynthesis of duramycin. Applied and Environmental Microbiology, 83(3), [e02698-16]. DOI: 10.1128/AEM.02698-16

Dunham, S. J. B., Ellis, J. F., Li, B., & Sweedler, J. V. (2017). Mass spectrometry imaging of complex microbial communities. Accounts of Chemical Research, 50(1), 96-104. DOI: 10.1021/acs.accounts.6b00503

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Wu, Q., Chu, J. L., Rubakhin, S. S., Gillette, M. U., & Sweedler, J. V. (2017). Dopamine-modified TiO2 monolith-assisted LDI MS imaging for simultaneous localization of small metabolites and lipids in mouse brain tissue with enhanced detection selectivity and sensitivity. Chemical Science, 8(5), 3926-3938. DOI: 10.1039/c7sc00937b

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Clark, K. M., Tian, S., Van der Donk, W. A., & Lu, Y. (2017). Probing the role of the backbone carbonyl interaction with the CuA center in azurin by replacing the peptide bond with an ester linkage. Chemical Communications, 53(1), 224-227. DOI: 10.1039/c6cc07274g

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Li, B., Comi, T. J., Si, T., Dunham, S. J. B., & Sweedler, J. V. (2016). A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms. Journal of Mass Spectrometry, 51(11), 1030-1035. DOI: 10.1002/jms.3827

Garg, N., Goto, Y., Chen, T., & van der Donk, W. A. (2016). Characterization of the stereochemical configuration of lanthionines formed by the lanthipeptide synthetase GeoM. Biopolymers, 106(6), 834-842. DOI: 10.1002/bip.22876

Lian, J., Jin, R., & Zhao, H. (2016). Construction of plasmids with tunable copy numbers in Saccharomyces cerevisiae and their applications in pathway optimization and multiplex genome integration. Biotechnology and Bioengineering, 113(11), 2462-2473. DOI: 10.1002/bit.26004

Jin, Z., Schwend, T., Fu, J., Bao, Z., Liang, J., Zhao, H., ... Yang, J. (2016). Members of the rusc protein family interact with Sufu and inhibit vertebrate hedgehog signaling. Development (Cambridge), 143(21), 3944-3955. DOI: 10.1242/dev.138917

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A., & Cunningham, B. T. (2016). Quantitative imaging of cell membrane-associated effective mass density using Photonic Crystal Enhanced Microscopy (PCEM). Progress in Quantum Electronics, 50, 1-18. DOI: 10.1016/j.pquantelec.2016.10.001

Sweedler, J. V. (2016). The Midwest Universities Analytical Chemistry Conference: Still the Midwest's Secret Weapon? Analytical Chemistry, 88(21), 10337. DOI: 10.1021/acs.analchem.6b04076

Henke, S. K., & Cronan, J. E. (2016). The Staphylococcus aureus group II biotin protein ligase BirA is an effective regulator of biotin operon transcription and requires the DNA binding domain for full enzymatic activity. Molecular Microbiology, 102(3), 417-429. DOI: 10.1111/mmi.13470

Radin, J. N., Kelliher, J. L., Párraga Solórzano, P. K., & Kehl-Fie, T. E. (2016). The Two-Component System ArlRS and Alterations in Metabolism Enable Staphylococcus aureus to Resist Calprotectin-Induced Manganese Starvation. PLoS Pathogens, 12(11), [e1006040]. DOI: 10.1371/journal.ppat.1006040

Garcia, A., Drown, B. S., & Hergenrother, P. J. (2016). Access to a Structurally Complex Compound Collection via Ring Distortion of the Alkaloid Sinomenine. Organic Letters, 18(19), 4852-4855. DOI: 10.1021/acs.orglett.6b02333

Sweedler, J. V. (2016). Choosing an Important Project: Take Two. Analytical Chemistry, 88(19), 9327. DOI: 10.1021/acs.analchem.6b03694

Cuculis, L., Abil, Z., Zhao, H., & Schroeder, C. M. (2016). TALE proteins search DNA using a rotationally decoupled mechanism. Nature Chemical Biology, 12(10), 831-837. DOI: 10.1038/nchembio.2152

Jansson, E. T., Comi, T. J., Rubakhin, S. S., & Sweedler, J. V. (2016). Single Cell Peptide Heterogeneity of Rat Islets of Langerhans. ACS Chemical Biology, 11(9), 2588-2595. DOI: 10.1021/acschembio.6b00602

Tang, W., Thibodeaux, G. N., & Van Der Donk, W. A. (2016). The Enterococcal Cytolysin Synthetase Coevolves with Substrate for Stereoselective Lanthionine Synthesis. ACS Chemical Biology, 11(9), 2438-2446. DOI: 10.1021/acschembio.6b00397

Sweedler, J. V. (2016). Our evolving editorial team. Analytical Chemistry, 88(17), 8347. DOI: 10.1021/acs.analchem.6b03222

Liang, Y., Ang, E. L., & Zhao, H. (2016). A step through the looking glass. Science China Life Sciences, 59(9), 979-980. DOI: 10.1007/s11427-016-0170-6

Tasan, I., Jain, S., & Zhao, H. (2016). Use of genome-editing tools to treat sickle cell disease. Human Genetics, 135(9), 1011-1028. DOI: 10.1007/s00439-016-1688-0

Botham, R. C., Roth, H. S., Book, A. P., Roady, P. J., Fan, T. M., & Hergenrother, P. J. (2016). Small-molecule procaspase-3 activation sensitizes cancer to treatment with diverse chemotherapeutics. ACS Central Science, 2(8), 545-559. DOI: 10.1021/acscentsci.6b00165

Hu, C. K., Southey, B. R., Romanova, E. V., Maruska, K. P., Sweedler, J. V., & Fernald, R. D. (2016). Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni. BMC Genomics, 17(1), [660]. DOI: 10.1186/s12864-016-2914-9

Deane, C. D., Burkhart, B. J., Blair, P. M., Tietz, J. I., Lin, A., & Mitchell, D. A. (2016). In Vitro Biosynthesis and Substrate Tolerance of the Plantazolicin Family of Natural Products. ACS Chemical Biology, 11(8), 2232-2243. DOI: 10.1021/acschembio.6b00369

Thiaville, J. J., Flood, J., Yurgel, S., Prunetti, L., Elbadawi-Sidhu, M., Hutinet, G., ... De Crécy-Lagard, V. (2016). Members of a Novel Kinase Family (DUF1537) Can Recycle Toxic Intermediates into an Essential Metabolite. ACS chemical biology, 11(8), 2304-2311. DOI: 10.1021/acschembio.6b00279

Huang, Q., Peh, J., Hergenrother, P. J., & Cunningham, B. T. (2016). Porous photonic crystal external cavity laser biosensor. Applied Physics Letters, 109(7), [071103]. DOI: 10.1063/1.4961107

Sweedler, J. V. (2016). The Analytical Chemistry Advisory Boards. Analytical Chemistry, 88(15), 7435. DOI: 10.1021/acs.analchem.6b02639

Medema, M. H., & Zhao, H. (2016). Editorial: Synthetic biology and bioinformatics. Natural Product Reports, 33(8), 913-914. DOI: 10.1039/c6np90031c

Zhang, M. M., Wang, Y., Ang, E. L., & Zhao, H. (2016). Engineering microbial hosts for production of bacterial natural products. Natural Product Reports, 33(8), 963-987. DOI: 10.1039/c6np00017g

Price, N. P. J., Labeda, D. P., Naumann, T. A., Vermillion, K. E., Bowman, M. J., Berhow, M. A., ... Bischoff, K. M. (2016). Quinovosamycins: New tunicamycin-type antibiotics in which the α, β-1',11'-linked N-acetylglucosamine residue is replaced by N-acetylquinovosamine. Journal of Antibiotics, 69(8), 637-646. DOI: 10.1038/ja.2016.49

Zhao, H., & Medema, M. H. (2016). Standardization for natural product synthetic biology. Natural Product Reports, 33(8), 920-924. DOI: 10.1039/c6np00030d

Peh, J., Fan, T. M., Wycislo, K. L., Roth, H. S., & Hergenrother, P. J. (2016). The combination of vemurafenib and procaspase-3 activation is synergistic in mutant BRAF melanomas. Molecular Cancer Therapeutics, 15(8), 1859-1869. DOI: 10.1158/1535-7163.MCT-16-0025

Zhang, X., Carter, M. S., Vetting, M. W., Francisco, B. S., Zhao, S., Al-Obaidi, N. F., ... Gerlt, J. A. (2016). Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars. Proceedings of the National Academy of Sciences of the United States of America, 113(29), E4161-E4169. DOI: 10.1073/pnas.1605546113

Lian, J., & Zhao, H. (2016). Functional Reconstitution of a Pyruvate Dehydrogenase in the Cytosol of Saccharomyces cerevisiae through Lipoylation Machinery Engineering. ACS Synthetic Biology, 5(7), 689-697. DOI: 10.1021/acssynbio.6b00019

Liang, Y., Ang, E. L., & Zhao, H. (2016). Engineered minicellulosomes for consolidated bioprocessing. In Handbook of Carbohydrate-Modifying Biocatalysts (Vol. 2, pp. 965-992). Pan Stanford Publishing Pte. Ltd.. DOI: 10.4032/9789814669795

Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P., & Jin, Y. S. (2016). Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae. Journal of Biotechnology, 229, 13-21. DOI: 10.1016/j.jbiotec.2016.04.041

Wan, Y., Carlson, J. A., Kesler, B. A., Peng, W., Su, P., Al-Mulla, S. A., ... Cunningham, B. T. (2016). Compact characterization of liquid absorption and emission spectra using linear variable filters integrated with a CMOS imaging camera. Scientific Reports, 6, [29117]. DOI: 10.1038/srep29117

Sweedler, J. V. (2016). Analytical chemistry and our national science initiatives. Analytical Chemistry, 88(13), 6629. DOI: 10.1021/acs.analchem.6b02358

Chang, S., Fornasiero, P., Gunnoe, T. B., Jones, C. W., Linic, S., Ooi, T., ... Zhao, H. (2016). ACS Catalysis and the Scope of Papers Sought in Three Catalysis Subdisciplines: Biocatalysis and Enzymology, Molecular Catalysis for Organic Synthesis, and Heterogeneous Photocatalysis. ACS Catalysis, 6(7), 4782-4785. DOI: 10.1021/acscatal.6b01749

Wang, M., Yu, C., & Zhao, H. (2016). Identification of an important motif that controls the activity and specificity of sugar transporters. Biotechnology and Bioengineering, 113(7), 1460-1467. DOI: 10.1002/bit.25926

Wendt, K. E., Ungerer, J., Cobb, R. E., Zhao, H., & Pakrasi, H. B. (2016). CRISPR/Cas9 mediated targeted mutagenesis of the fast growing cyanobacterium Synechococcus elongatus UTEX 2973. Microbial Cell Factories, 15(1), [115]. DOI: 10.1186/s12934-016-0514-7

Wu, Q., Comi, T. J., Li, B., Rubakhin, S. S., & Sweedler, J. V. (2016). On-Tissue Derivatization via Electrospray Deposition for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging of Endogenous Fatty Acids in Rat Brain Tissues. Analytical Chemistry, 88(11), 5988-5995. DOI: 10.1021/acs.analchem.6b01021

Yu, H., Le, H. M., Kaale, E., Long, K. D., Layloff, T., Lumetta, S. S., & Cunningham, B. T. (2016). Characterization of drug authenticity using thin-layer chromatography imaging with a mobile phone. Journal of Pharmaceutical and Biomedical Analysis, 125, 85-93. DOI: 10.1016/j.jpba.2016.03.018

Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H., & Sweedler, J. V. (2016). Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging. Journal of Proteome Research, 15(6), 1955-1962. DOI: 10.1021/acs.jproteome.6b00127

Lee, C. Y., Fan, Y., Rubakhin, S. S., Yoon, S., & Sweedler, J. V. (2016). A neuron-in-capillary platform for facile collection and mass spectrometric characterization of a secreted neuropeptide. Scientific Reports, 6, [26940]. DOI: 10.1038/srep26940

Cronan, J. E. (2016). Assembly of lipoic acid on its cognate enzymes: An extraordinary and essential biosynthetic pathway. Microbiology and Molecular Biology Reviews, 80(2), 429-450. DOI: 10.1128/MMBR.00073-15

Dunham, S. J. B., Comi, T. J., Ko, K., Li, B., Baig, N. F., Morales-Soto, N., ... Sweedler, J. V. (2016). Metal-assisted polyatomic SIMS and laser desorption/ionization for enhanced small molecule imaging of bacterial biofilms. Biointerphases, 11(2), [02A325]. DOI: 10.1116/1.4942884

Labeda, D. P., Rong, X., Huang, Y., Doroghazi, J. R., Ju, K. S., & Metcalf, W. W. (2016). Taxonomic evaluation of species in the streptomyces hirsutus clade using multi-locus sequence analysis and proposals to reclassify several species in this clade. International Journal of Systematic and Evolutionary Microbiology, 66(6), 2444-2450. DOI: 10.1099/ijsem.0.001017

Tietz, J. I., & Mitchell, D. A. (2016). Using genomics for natural product structure elucidation. Current Topics in Medicinal Chemistry, 16(15), 1645-1694.

Thibodeaux, C. J., Wagoner, J., Yu, Y., & Van Der Donk, W. A. (2016). Leader Peptide Establishes Dehydration Order, Promotes Efficiency, and Ensures Fidelity during Lacticin 481 Biosynthesis. Journal of the American Chemical Society, 138(20), 6436-6444. DOI: 10.1021/jacs.6b00163

Shi, S., Zhang, H., Ang, E. L., & Zhao, H. (2016). High-throughput screening or selection methods for evolutionary enzyme engineering. In Understanding Enzymes: Function, Design, Engineering and Analysis (pp. 707-744). Pan Stanford Publishing Pte. Ltd.. DOI: 10.4032/9789814669337

Cunningham, B. T., Zhang, M., Zhuo, Y., Kwon, L., & Race, C. (2016). Recent Advances in Biosensing with Photonic Crystal Surfaces: A Review. IEEE Sensors Journal, 16(10), 3349-3366. [7101794]. DOI: 10.1109/JSEN.2015.2429738

Liang, Y., Zhang, M. M., Ang, E. L., & Zhao, H. (2016). Biocatalysis for Drug Discovery and Development. In Green Biocatalysis (pp. 421-455). wiley. DOI: 10.1002/9781118828083.ch16

Shi, S., Si, T., Liu, Z., Zhang, H., Ang, E. L., & Zhao, H. (2016). Metabolic engineering of a synergistic pathway for n-butanol production in Saccharomyces cerevisiae. Scientific Reports, 6, [25675]. DOI: 10.1038/srep25675

Sweedler, J. V. (2016). A Universal Identification Number for Authors? Go Ahead, Try It. Analytical Chemistry, 88(9), 4583. DOI: 10.1021/acs.analchem.6b01390

Metcalf, W. W. (2016). Classic spotlight: Electron bifurcation, a unifying concept for energy conservation in anaerobes. Journal of Bacteriology, 198(9), 1358. DOI: 10.1128/JB.00185-16

Wang, M., & Zhao, H. (2016). Combined and iterative use of computational design and directed evolution for protein-ligand binding design. In Methods in Molecular Biology (Vol. 1414, pp. 139-153). (Methods in Molecular Biology; Vol. 1414). Humana Press Inc.. DOI: 10.1007/978-1-4939-3569-7_8

Wu, H. Y., Liu, L., Lu, M., & Cunningham, B. T. (2016). Lasing Emission from Plasmonic Nanodome Arrays. Advanced Optical Materials, 4(5), 708-714. DOI: 10.1002/adom.201500669

Kwon, L., Long, K. D., Wan, Y., Yu, H., & Cunningham, B. T. (2016). Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing. Biotechnology Advances, 34(3), 291-304. DOI: 10.1016/j.biotechadv.2016.02.010

Huo, L., & Van Der Donk, W. A. (2016). Discovery and Characterization of Bicereucin, an Unusual d -Amino Acid-Containing Mixed Two-Component Lantibiotic. Journal of the American Chemical Society, 138(16), 5254-5257. DOI: 10.1021/jacs.6b02513

See, G. G., Naughton, M. S., Xu, L., Nuzzo, R. G., Kenis, P. J. A., & Cunningham, B. T. (2016). Enhanced emission of quantum dots embedded within the high-index dielectric regions of photonic crystal slabs. Applied Physics Letters, 108(17), [171108]. DOI: 10.1063/1.4948379

Huang, H., Carter, M. S., Vetting, M. W., Al-Obaidi, N., Patskovsky, Y., Almo, S. C., & Gerlt, J. A. (2016). Correction to "a General Strategy for the Discovery of Metabolic Pathways: D -Threitol, l -Threitol, and Erythritol Utilization in Mycobacterium smegmatis" (J. Am. Chem. Soc. (2015) 137 (14570-14573) 10.1021/jacs.5b08968). Journal of the American Chemical Society, 138(12). DOI: 10.1021/jacs.6b01906

Zhang, H., Li, X., Su, X., Ang, E. L., Zhang, Y., & Zhao, H. (2016). Production of Adipic Acid from Sugar Beet Residue by Combined Biological and Chemical Catalysis. ChemCatChem, 8(8), 1500-1506. DOI: 10.1002/cctc.201600069

Ong, T. H., Romanova, E. V., Roberts-Galbraith, R. H., Yang, N., Zimmerman, T. A., Collins, J. J., ... Sweedler, J. V. (2016). Mass spectrometry imaging and identification of peptides associated with cephalic ganglia regeneration in Schmidtea mediterranea. Journal of Biological Chemistry, 291(15), 8109-8120. DOI: 10.1074/jbc.M115.709196

Sweedler, J. V. (2016). Choosing an Important Project: The First Stage to Getting Research Published. Analytical Chemistry, 88(7), 3421. DOI: 10.1021/acs.analchem.6b01036

Tawfik, D. S., & van der Donk, W. A. (2016). Editorial overview: Biocatalysis and Biotransformation: Esoteric, Niche Enzymology. Current Opinion in Chemical Biology, 31, v-vii. DOI: 10.1016/j.cbpa.2016.03.002

Sweedler, J. V. (2016). Please Welcome John Yates, III as Editor of the Journal of Proteome Research. Journal of Proteome Research, 15(4), 1115. DOI: 10.1021/acs.jproteome.6b00195

Ding, W., Liu, W. Q., Jia, Y., Li, Y., Van Der Donk, W. A., & Zhang, Q. (2016). Biosynthetic investigation of phomopsins reveals a widespread pathway for ribosomal natural products in Ascomycetes. Proceedings of the National Academy of Sciences of the United States of America, 113(13), 3521-3526. DOI: 10.1073/pnas.1522907113

Ortega, M. A., Hao, Y., Walker, M. C., Donadio, S., Sosio, M., Nair, S. K., & van der Donk, W. (2016). Structure and tRNA Specificity of MibB, a Lantibiotic Dehydratase from Actinobacteria Involved in NAI-107 Biosynthesis. Cell Chemical Biology, 23(3), 370-380. DOI: 10.1016/j.chembiol.2015.11.017

Tan, Y., Halsey, J. F., Tang, T., Wetering, S. V., Taine, E., Cleve, M. V., & Cunningham, B. T. (2016). Application of photonic crystal enhanced fluorescence to detection of low serum concentrations of human IgE antibodies specific for a purified cat allergen (Fel D1). Biosensors and Bioelectronics, 77, 194-201. DOI: 10.1016/j.bios.2015.08.071

Molohon, K. J., Blair, P. M., Park, S., Doroghazi, J. R., Maxson, T., Hershfield, J. R., ... Mitchell, D. A. (2016). Plantazolicin Is an Ultranarrow-Spectrum Antibiotic That Targets the Bacillus anthracis Membrane. ACS Infectious Diseases, 2(3), 207-220. DOI: 10.1021/acsinfecdis.5b00115

Sweedler, J. V. (2016). Career Advice for Graduate Students and Postdoctoral Fellows. Analytical Chemistry, 88(5), 2513-2514. DOI: 10.1021/acs.analchem.6b00532

Wang, M., Yu, C., & Zhao, H. (2016). Directed evolution of xylose specific transporters to facilitate glucose-xylose co-utilization. Biotechnology and Bioengineering, 113(3), 484-491. DOI: 10.1002/bit.25724

Cronan, J. E. (2016). PBR322 vectors having tetracycline-dependent replication. Plasmid, 84-85, 20-26. DOI: 10.1016/j.plasmid.2016.02.004

Walker, M. C., & van der Donk, W. A. (2016). The many roles of glutamate in metabolism. Journal of Industrial Microbiology and Biotechnology, 43(2-3), 419-430. DOI: 10.1007/s10295-015-1665-y

Goering, A. W., McClure, R. A., Doroghazi, J. R., Albright, J. C., Haverland, N. A., Zhang, Y., ... Kelleher, N. L. (2016). Metabologenomics: Correlation of microbial gene clusters with metabolites drives discovery of a nonribosomal peptide with an unusual amino acid monomer. ACS Central Science, 2(2), 99-108. DOI: 10.1021/acscentsci.5b00331

Zhao, X., & Van Der Donk, W. A. (2016). Structural Characterization and Bioactivity Analysis of the Two-Component Lantibiotic Flv System from a Ruminant Bacterium. Cell Chemical Biology, 23(2), 246-256. DOI: 10.1016/j.chembiol.2015.11.014

Bi, H., Zhu, L., Jia, J., & Cronan, J. E. (2016). A Biotin Biosynthesis Gene Restricted to Helicobacter. Scientific Reports, 6, [21162]. DOI: 10.1038/srep21162

Freestone, T. S., & Zhao, H. (2016). Combinatorial pathway engineering for optimized production of the anti-malarial FR900098. Biotechnology and Bioengineering, 113(2), 384-392. DOI: 10.1002/bit.25719

Guo, W., Sheng, J., Zhao, H., & Feng, X. (2016). Metabolic engineering of Saccharomyces cerevisiae to produce 1-hexadecanol from xylose. Microbial Cell Factories, 15(1), [24]. DOI: 10.1186/s12934-016-0423-9

Luo, Y., Enghiad, B., & Zhao, H. (2016). New tools for reconstruction and heterologous expression of natural product biosynthetic gene clusters. Natural Product Reports, 33(2), 174-182. DOI: 10.1039/c5np00085h

Ortega, M. A., & Van Der Donk, W. A. (2016). New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products. Cell Chemical Biology, 23(1), 31-44. DOI: 10.1016/j.chembiol.2015.11.012

Yuan, Y., Andersen, E., & Zhao, H. (2016). Flexible and Versatile Strategy for the Construction of Large Biochemical Pathways. ACS Synthetic Biology, 5(1), 46-52. DOI: 10.1021/acssynbio.5b00117

Bao, Z., Cobb, R. E., & Zhao, H. (2016). Accelerated genome engineering through multiplexing. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 8(1), 5-21. DOI: 10.1002/wsbm.1319

Livnat, I., Tai, H. C., Jansson, E. T., Bai, L., Romanova, E. V., Chen, T. T., ... Sweedler, J. V. (2016). A D-amino acid-containing neuropeptide discovery funnel. Analytical Chemistry, 88(23), 11868-11876. DOI: 10.1021/acs.analchem.6b03658

Shi, S., Liang, Y., Zhang, M. M., Ang, E. L., & Zhao, H. (2016). A highly efficient single-step, markerless strategy for multi-copy chromosomal integration of large biochemical pathways in Saccharomyces cerevisiae. Metabolic Engineering, 33, 19-27. DOI: 10.1016/j.ymben.2015.10.011

Li, B., Dunham, S. J. B., Dong, Y., Yoon, S., Zeng, M., & Sweedler, J. V. (2016). Analytical capabilities of mass spectrometry imaging and its potential applications in food science. Trends in Food Science and Technology, 47, 50-63. DOI: 10.1016/j.tifs.2015.10.018

Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., ... Jing, J. (2016). Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide. PLoS ONE, 11(1), [e0147335]. DOI: 10.1371/journal.pone.0147335

Luu, L. M., Nguyen, L., Peng, S., Lee, J. Y., Lee, H. Y., Wong, C. H., ... Zimmerman, S. C. (2016). A Potent Inhibitor of Protein Sequestration by Expanded Triplet (CUG) Repeats that Shows Phenotypic Improvements in a Drosophila Model of Myotonic Dystrophy. ChemMedChem, 11(13), 1428-1435. DOI: 10.1002/cmdc.201600081

Metcalf, W. W. (2016). Classic spotlight: What's on (in) your plate today? Journal of Bacteriology, 198(21), 2897-2898. DOI: 10.1128/JB.00609-16

Metcalf, W. W. (2016). Classic spotlight: Metabolic flux-which way to go? Journal of Bacteriology, 198(24), 3248-3249. DOI: 10.1128/JB.00731-16

Kelliher, J. L., & Kehl-Fie, T. E. (2016). Competition for Manganese at the Host–Pathogen Interface. In Host-Microbe Interactions, 2016 (Vol. 142, pp. 1-25). (Progress in Molecular Biology and Translational Science; Vol. 142). Elsevier B.V.. DOI: 10.1016/bs.pmbts.2016.05.002

Blodgett, J. A., Zhang, J. K., Yu, X., & Metcalf, W. W. (2016). Conserved biosynthetic pathways for phosalacine, bialaphos and newly discovered phosphonic acid natural products. Journal of Antibiotics, 69(1), 15-25. DOI: 10.1038/ja.2015.77

Roth, H. S., & Hergenrother, P. J. (2016). Derivatives of procaspase-activating compound 1 (PAC-1) and their anticancer activities. Current Medicinal Chemistry, 23(3), 201-241.

Wang, M., Li, S., & Zhao, H. (2016). Design and engineering of intracellular-metabolite-sensing/regulation gene circuits in Saccharomyces cerevisiae. Biotechnology and Bioengineering, 113(1), 206-215. DOI: 10.1002/bit.25676

Sun, H., Yeo, W. L., Lim, Y. H., Chew, X., Smith, D. J., Xue, B., ... Ang, E. L. (2016). Directed Evolution of a Fluorinase for Improved Fluorination Efficiency with a Non-native Substrate. Angewandte Chemie - International Edition, 55(46), 14277-14280. DOI: 10.1002/anie.201606722

Patel, A. V., Kawai, T., Rubakhin, S. S., & Sweedler, J. V. (2016). Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function. In D-Amino Acids: Physiology, Metabolism, and Application (pp. 173-197). Springer Japan. DOI: 10.1007/978-4-431-56077-7_12

Wang, Y., Cobb, R. E., & Zhao, H. (2016). High-Efficiency Genome Editing of Streptomyces Species by an Engineered CRISPR/Cas System. In Methods in Enzymology (pp. 271-284). (Methods in Enzymology; Vol. 575). Academic Press Inc.. DOI: 10.1016/bs.mie.2016.03.014

Shi, S., Ang, E. L., Tan, M. H., & Zhao, H. (2016). Identification and engineering of n-butanol biosensors by transcriptome analysis in yeast. In Metabolic Engineering 11 (pp. 458-459). AIChE.

Vetting, M. W., Bouvier, J. T., Gerlt, J. A., & Almo, S. C. (2016). Purification, crystallization and structural elucidation of d-galactaro-1,4-lactone cycloisomerase from Agrobacterium tumefaciens involved in pectin degradation. Acta Crystallographica Section:F Structural Biology Communications, 72, 36-41. DOI: 10.1107/S2053230X15023286

Si, T., & Zhao, H. (2016). RNAi-assisted genome evolution (RAGE) in Saccharomyces cerevisiae. Methods in Molecular Biology, 1470, 183-198. DOI: 10.1007/978-1-4939-6337-9_15

Yadava, U., Vetting, M. W., Al Obaidi, N., Carter, M. S., Gerlt, J. A., & Almo, S. C. (2016). Structure of an ABC transporter solute-binding protein specific for the amino sugars glucosamine and galactosamine. Acta Crystallographica Section:F Structural Biology Communications, 72, 467-472. DOI: 10.1107/S2053230X16007500

Maxson, T., & Mitchell, D. A. (2016). Targeted treatment for bacterial infections: prospects for pathogen-specific antibiotics coupled with rapid diagnostics. Tetrahedron, 72(25), 3609-3624. DOI: 10.1016/j.tet.2015.09.069

Molloy, E. M., Tietz, J. I., Blair, P. M., & Mitchell, D. A. (2016). Biological characterization of the hygrobafilomycin antibiotic JBIR-100 and bioinformatic insights into the hygrolide family of natural products. Bioorganic and Medicinal Chemistry, 24(24), S1-S16. DOI: 10.1016/j.bmc.2016.05.021

Baig, N., Polisetti, S., Morales-Soto, N., Dunham, S. J. B., Sweedler, J. V., Shrout, J. D., & Bohn, P. W. (2016). Label-free molecular imaging of bacterial communities of the opportunistic pathogen Pseudomonas aeruginosa. In Biosensing and Nanomedicine IX (Vol. 9930). [993004] SPIE. DOI: 10.1117/12.2236695

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Huang, Z., Wang, K. K. A., & Van Der Donk, W. A. (2016). New insights into the biosynthesis of fosfazinomycin. Chemical Science, 7(8), 5219-5223. DOI: 10.1039/c6sc01389a

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