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Research Areas

Mining Microbioal Genomes: Publications

Xu, W., Klumbys, E., Ang, E. L., & Zhao, H. (2020). Emerging molecular biology tools and strategies for engineering natural product biosynthesis. Metabolic Engineering Communications, 10, [e00108].

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., ... Freemont, P. S. (2019). Author Correction: Building a global alliance of biofoundries (Nature Communications, (2019), 10, 1, (2040), 10.1038/s41467-019-10079-2). Nature communications, 10(1), [3132].

Lehmann, J. W., Crouch, I. T., Blair, D. J., Trobe, M., Wang, P., Li, J., & Burke, M. (2019). Axial shielding of Pd(II) complexes enables perfect stereoretention in Suzuki-Miyaura cross-coupling of Csp 3 boronic acids Nature communications, 10(1), [1263].

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., ... Freemont, P. S. (2019). Building a global alliance of biofoundries. Nature communications, 10(1), [2040].

Janin, M., Ortiz-Barahona, V., de Moura, M. C., Martínez-Cardús, A., Llinàs-Arias, P., Soler, M., ... Esteller, M. (2019). Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program. Acta Neuropathologica, 138(6), 1053-1074.

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A., & Rodriguez-Zas, S. L. (2019). Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens. Molecular Neurobiology, 56(12), 7929-7949.

Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., ... Pradhan, A. A. (2019). PACAP and Other Neuropeptide Targets Link Chronic Migraine and Opioid-induced Hyperalgesia in Mouse Models. Molecular & cellular proteomics : MCP, 18(12), 2447-2458.

Xing, M., Wei, Y., Zhou, Y., Zhang, J., Lin, L., Hu, Y., ... Zhang, Y. (2019). Radical-mediated C-S bond cleavage in C2 sulfonate degradation by anaerobic bacteria. Nature communications, 10(1), [1609].

Thirawatananond, P., McPherson, R. L., Malhi, J., Nathan, S., Lambrecht, M. J., Brichacek, M., ... Gabelli, S. B. (2019). Structural analyses of NudT16–ADP-ribose complexes direct rational design of mutants with improved processing of poly(ADP-ribosyl)ated proteins. Scientific reports, 9(1), [5940].

Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., ... Maranas, C. D. (2019). A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data. Metabolic Engineering Communications, 9, [e00101].

Chekan, J. R., Ongpipattanakul, C., & Nair, S. K. (2019). Steric complementarity directs sequence promiscuous leader binding in RiPP biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 116(48), 24049-24055.

Duan, Y., Llorente, C., Lang, S., Brandl, K., Chu, H., Jiang, L., ... Schnabl, B. (2019). Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. Nature, 575(7783), 505-511.

Mand, T. D., & Metcalf, W. W. (2019). Energy Conservation and Hydrogenase Function in Methanogenic Archaea, in Particular the Genus Methanosarcina. Microbiology and molecular biology reviews : MMBR, 83(4).

Parker, E. N., Drown, B. S., Geddes, E. J., Lee, H. Y., Ismail, N., Lau, G. W., & Hergenrother, P. J. (2019). Implementation of permeation rules leads to a FabI inhibitor with activity against Gram-negative pathogens. Nature Microbiology.

Boudreau, M. W., Peh, J., & Hergenrother, P. J. (2019). Procaspase-3 Overexpression in Cancer: A Paradoxical Observation with Therapeutic Potential. ACS chemical biology, 14(11), 2335-2348.

HamediRad, M., Chao, R., Weisberg, S., Lian, J., Sinha, S., & Zhao, H. (2019). Towards a fully automated algorithm driven platform for biosystems design. Nature communications, 10(1), [5150].

Zeng, Z., Liu, X. L., Farley, K. R., Wei, J. H., Metcalf, W. W., Summons, R. E., & Welander, P. V. (2019). GDGT cyclization proteins identify the dominant archaeal sources of tetraether lipids in the ocean. Proceedings of the National Academy of Sciences of the United States of America, 116(45), 22505-22511.

Sweedler, J. V. (2019). Welcome JASMS to the ACS Measurement Science Family. Analytical chemistry, 91(21).

Fasan, R., Jennifer Kan, S. B., & Zhao, H. (2019). A continuing career in biocatalysis: Frances H. Arnold. ACS Catalysis, 9(11), 9775-9788.

Parkinson, E. I., Erb, A., Eliot, A. C., Ju, K. S., & Metcalf, W. W. (2019). Fosmidomycin biosynthesis diverges from related phosphonate natural products. Nature chemical biology, 15(11), 1049-1056.

Park, H. M., Satta, R., Davis, R. G., Goo, Y. A., Leduc, R. D., Fellers, R. T., ... Lasek, A. W. (2019). Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol. Journal of Proteome Research, 18(11), 3999-4012.

Howe, G. W., & Van Der Donk, W. A. (2019). Temperature-Independent Kinetic Isotope Effects as Evidence for a Marcus-like Model of Hydride Tunneling in Phosphite Dehydrogenase. Biochemistry, 58(41), 4260-4268.

Zallot, R., Oberg, N., & Gerlt, J. A. (2019). The EFI Web Resource for Genomic Enzymology Tools: Leveraging Protein, Genome, and Metagenome Databases to Discover Novel Enzymes and Metabolic Pathways. Biochemistry, 58(41), 4169-4182.

Farley, K. R., & Metcalf, W. W. (2019). The streptothricin acetyltransferase (sat) gene as a positive selectable marker for methanogenic archaea. FEMS microbiology letters, 366(17), [fnz216].

Canady, T. D., Li, N., Smith, L. D., Lu, Y., Kohli, M., Smith, A. M., & Cunningham, B. T. (2019). Digital-resolution detection of microRNA with singlebase selectivity by photonic resonator absorption microscopy. Proceedings of the National Academy of Sciences of the United States of America, 116(39), 19362-19367.

Precord, T. W., Mahanta, N., & Mitchell, D. A. (2019). Reconstitution and Substrate Specificity of the Thioether-Forming Radical S-Adenosylmethionine Enzyme in Freyrasin Biosynthesis. ACS chemical biology, 14(9), 1981-1989.

Yuan, Y., Zallot, R., Grove, T. L., Payan, D. J., Martin-Verstraete, I., Šepić, S., ... de Crécy-Lagard, V. (2019). Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens. Proceedings of the National Academy of Sciences of the United States of America, 116(38), 19126-19135.

Sweedler, J. V. (2019). What Does Your Future Academic Productivity Depend On? Analytical chemistry, 91(17).

Bothwell, I. R., Cogan, D. P., Kim, T., Reinhardt, C. J., van der Donk, W. A., & Nair, S. K. (2019). Characterization of glutamyl-tRNA–dependent dehydratases using nonreactive substrate mimics. Proceedings of the National Academy of Sciences of the United States of America, 116(35), 17245-17250.

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., ... Zhang, Y. (2019). A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium. Biochemical Journal, 476(15), 2271-2279.

Huang, Q., & Cunningham, B. T. (2019). Microcavity-Mediated Spectrally Tunable Amplification of Absorption in Plasmonic Nanoantennas. Nano letters, 19(8), 5297-5303.

Sweedler, J. V. (2019). Avoiding a Retraction: Some Simple Guidelines on What NOT to Do. Analytical chemistry, 91(15), 9331-9332.

Kondakova, T., Kumar, S., & Cronan, J. E. (2019). A novel synthesis of trans-unsaturated fatty acids by the Gram-positive commensal bacterium Enterococcus faecalis FA2-2. Chemistry and Physics of Lipids, 222, 23-35.

Schultz, J. C., Cao, M., & Zhao, H. (2019). Development of a CRISPR/Cas9 system for high efficiency multiplexed gene deletion in Rhodosporidium toruloides. Biotechnology and bioengineering, 116(8), 2103-2109.

Aguirre, M. Á., Long, K. D., & Cunningham, B. T. (2019). Spectrometric Smartphone-Based System for Ibuprofen Quantification in Commercial Dosage Tablets. Journal of Pharmaceutical Sciences, 108(8), 2593-2598.

Ting, C. P., Funk, M. A., Halaby, S. L., Zhang, Z., Gonen, T., & van der Donk, W. A. (2019). Use of a scaffold peptide in the biosynthesis of amino acid-derived natural products. Science, 365(6450), 280-284.

Neumann, E. K., Do, T. D., Comi, T. J., & Sweedler, J. V. (2019). Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures. Angewandte Chemie - International Edition, 58(28), 9348-9364.

Sweedler, J. V. (2019). Reproducibility and Replicability. Analytical chemistry, 91(13), 7971-7972.

Srinivas, S., & Cronan, J. E. (2019). Coping with inadvertent lysis of Escherichia coli cultures: Strains resistant to lysogeny and infection by the stealthy lysogenic phage Φ80. Biotechnology and bioengineering, 116(7), 1820-1826.

Radin, J. N., Kelliher, J. L., Solórzano, P. K. P., Grim, K. P., Ramezanifard, R., Slauch, J. M., & Kehl-Fie, T. E. (2019). Metal-independent variants of phosphoglycerate mutase promote resistance to nutritional immunity and retention of glycolysis during infection. PLoS pathogens, 15(7), [e1007971].

Tran, V. G., Cao, M., Fatma, Z., Song, X., & Zhao, H. (2019). Development of a CRISPR/Cas9-Based Tool for Gene Deletion in Issatchenkia orientalis. mSphere, 4(3).

Jo, Y. I., Burke, M. D., & Cheon, C. H. (2019). Modular Syntheses of Phenanthroindolizidine Natural Products. Organic Letters, 21(11), 4201-4204.

Hegemann, J. D., Shi, L., Gross, M. L., & van der Donk, W. A. (2019). Mechanistic Studies of the Kinase Domains of Class IV Lanthipeptide Synthetases. ACS chemical biology, 14(7), 1583-1592.

Llabani, E., Hicklin, R. W., Lee, H. Y., Motika, S. E., Crawford, L. A., Weerapana, E., & Hergenrother, P. (2019). Diverse compounds from pleuromutilin lead to a thioredoxin inhibitor and inducer of ferroptosis. Nature Chemistry, 11(6), 521-532.

Hudson, G. A., & Mitchell, D. A. (2019). Corrigendum to “RiPP antibiotics: biosynthesis and engineering potential” [Curr Opin Microbiol 45 (2018) 61-69](S1369527417300826)(10.1016/j.mib.2018.02.010). Current Opinion in Microbiology, 49.

Aye, Y., & Hergenrother, P. (2019). Editorial overview: From the iceman to modern medicine. Current Opinion in Chemical Biology, 50, A1-A2.

Alim, F. Z. D., Romanova, E. V., Tay, Y. L., Rahman, A. Y. B. A., Chan, K. G., Hong, K. W., ... Hindmarch, C. C. T. (2019). Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel. PloS one, 14(6), [e0216679].

Hudson, G. A., Burkhart, B. J., DiCaprio, A. J., Schwalen, C. J., Kille, B., Pogorelov, T. V., & Mitchell, D. A. (2019). Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides. Journal of the American Chemical Society, 141(20), 8228-8238.

Dong, S. H., Liu, A., Mahanta, N., Mitchell, D. A., & Nair, S. K. (2019). Mechanistic Basis for Ribosomal Peptide Backbone Modifications. ACS Central Science, 5(5), 842-851.

Hegemann, J. D., Bobeica, S. C., Walker, M. C., Bothwell, I. R., & van der Donk, W. A. (2019). Assessing the Flexibility of the Prochlorosin 2.8 Scaffold for Bioengineering Applications. ACS synthetic biology, 8(5), 1204-1214.

Hamedirad, M., Weisberg, S., Chao, R., Lian, J., & Zhao, H. (2019). Highly Efficient Single-Pot Scarless Golden Gate Assembly. ACS synthetic biology, 8(5), 1047-1054.

Sweedler, J. V. (2019). The Periodic Table of Elements at 150. Analytical chemistry, 91(9).

Zhu, L., Zou, Q., Cao, X., & Cronan, J. E. (2019). Enterococcus faecalis encodes an atypical auxiliary acyl carrier protein required for efficient regulation of fatty acid synthesis by exogenous fatty acids. mBio, 10(3), [e00577-19].

Srinivas, S., Hu, Z., & Cronan, J. E. (2019). Escherichia coli vectors having stringently repressible replication origins allow a streamlining of Crispr/Cas9 gene editing. Plasmid, 103, 53-62.

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T., & Sweedler, J. V. (2019). Investigating brain d-serine: Advocacy for good practices. Acta Physiologica, 226(1), [e13257].

Kondakova, T., & Cronan, J. E. (2019). Transcriptional regulation of fatty acid cis–trans isomerization in the solvent-tolerant soil bacterium, Pseudomonas putida F1. Environmental Microbiology, 21(5), 1659-1676.

Neumann, E. K., Comi, T. J., Rubakhin, S., & Sweedler, J. V. (2019). Lipid Heterogeneity between Astrocytes and Neurons Revealed by Single-Cell MALDI-MS Combined with Immunocytochemical Classification. Angewandte Chemie - International Edition, 58(18), 5910-5914.

Petronikolou, N., Ortega, M. A., Borisova, S. A., Nair, S. K., & Metcalf, W. W. (2019). Molecular Basis of Bacillus subtilis ATCC 6633 Self-Resistance to the Phosphono-oligopeptide Antibiotic Rhizocticin. ACS chemical biology, 14(4), 742-750.

Sweedler, J. V. (2019). Advancing the Fields of Measurement Science with Partnerships and Awards. Analytical chemistry, 91(7).

Shields, R. C., & Jensen, P. A. (2019). The bare necessities: Uncovering essential and condition-critical genes with transposon sequencing. Molecular Oral Microbiology, 34(2), 39-50.

Tang, W., Bobeica, S. C., Wang, L., & van der Donk, W. A. (2019). CylA is a sequence-specific protease involved in toxin biosynthesis. Journal of Industrial Microbiology and Biotechnology, 46(3-4), 537-549.

Muraglia, K. A., Chorghade, R. S., Kim, B. R., Tang, X. X., Shah, V. S., Grillo, A. S., ... Burke, M. D. (2019). Small-molecule ion channels increase host defences in cystic fibrosis airway epithelia. Nature, 567(7748), 405-408.

Wu, C., Biswas, S., Garcia De Gonzalo, C. V., & van der Donk, W. A. (2019). Investigations into the Mechanism of Action of Sublancin. ACS Infectious Diseases, 5(3), 454-459.

Sweedler, J. V. (2019). Salami Publications and Duplicate Submissions: Put Them on Your List of Things to Avoid. Analytical chemistry, 91(5), 3177-3178.

Zukher, I., Pavlov, M., Tsibulskaya, D., Kulikovsky, A., Zyubko, T., Bikmetov, D., ... Severinova, K. (2019). Reiterative synthesis by the ribosome and recognition of the N-terminal formyl group by biosynthetic machinery contribute to evolutionary conservation of the length of antibiotic microcin c peptide precursor. mBio, 10(2), [e00768-19].

Sweedler, J. V. (2019). The Evolving World of Scientific Publications: From Unethical Behaviors to New Mandates from Funding Agencies. Analytical chemistry, 91(3), 1673-1674.

Wang, B., Guo, F., Dong, S. H., & Zhao, H. (2019). Activation of silent biosynthetic gene clusters using transcription factor decoys. Nature chemical biology, 15(2), 111-114.

Aguirre, M. Á., Long, K. D., Canals, A., & Cunningham, B. T. (2019). Point-of-use detection of ascorbic acid using a spectrometric smartphone-based system. Food chemistry, 272, 141-147.

Woodburn, E. V., Long, K. D., & Cunningham, B. T. (2019). Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer. IEEE Sensors Journal, 19(2), 508-514. [8494768].

Bobeica, S. C., Dong, S. H., Huo, L., Mazo, N., McLaughlin, M. I., Jiménez-Osés, G., ... van der Donk, W. A. (2019). Insights into AMS/PCAT transporters from biochemical and structural characterization of a double Glycine motif protease. eLife, 8.

Bingham, T. W., Hernandez, L. W., Olson, D. G., Svec, R. L., Hergenrother, P., & Sarlah, D. (2019). Enantioselective Synthesis of Isocarbostyril Alkaloids and Analogs Using Catalytic Dearomative Functionalization of Benzene. Journal of the American Chemical Society, 141(1), 657-670.

Dicaprio, A. J., Firouzbakht, A., Hudson, G. A., & Mitchell, D. A. (2019). Enzymatic Reconstitution and Biosynthetic Investigation of the Lasso Peptide Fusilassin. Journal of the American Chemical Society, 141(1), 290-297.

Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., ... Medema, M. H. (Accepted/In press). A computational framework to explore large-scale biosynthetic diversity. Nature chemical biology.

Che, C., Li, N., Long, K. D., Aguirre, M. Á., Canady, T. D., Huang, Q., ... Cunningham, B. T. (2019). Activate capture and digital counting (AC + DC) assay for protein biomarker detection integrated with a self-powered microfluidic cartridge. Lab on a chip, 19(23), 3943-3953.

Yin, J., Wei, Y., Liu, D., Hu, Y., Lu, Q., Lui Ang, E., ... Zhang, Y. (2019). An extended bacterial reductive pyrimidine degradation pathway that enables nitrogen release from β-alanine. Journal of Biological Chemistry, 294(43), 15662-15671.

Tong, Y., Wei, Y., Hu, Y., Ang, E. L., Zhao, H., & Zhang, Y. (2019). A pathway for isethionate dissimilation in Bacillus krulwichiae. Applied and environmental microbiology, 85(15), [e00793-19].

Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V., & Newmark, P. A. (2019). A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host. PLoS biology, 17(10), [e3000485].

Zhou, Y., Wei, Y., Lin, L., Xu, T., Ang, E. L., Zhao, H., ... Zhang, Y. (2019). Biochemical and structural investigation of sulfoacetaldehyde reductase from Klebsiella oxytoca. Biochemical Journal, 476(4), 733-746.

Li, M., Wei, Y., Yin, J., Lin, L., Zhou, Y., Hua, G., ... Zhang, Y. (2019). Biochemical and structural investigation of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense. Biochemical Journal, 476(11), 1605-1619.

Fu, H., Goettge, M. N., & Metcalf, W. W. (2019). Biochemical characterization of the methylmercaptopropionate: Cob(I)alamin Methyltransferase from Methanosarcina acetivorans. Journal of bacteriology, 201(12), [e00130-19].

Mahanta, N., Szantai-Kis, D. M., Petersson, E. J., & Mitchell, D. A. (2019). Biosynthesis and Chemical Applications of Thioamides. ACS chemical biology.

Dong, S. H., Kulikovsky, A., Zukher, I., Estrada, P., Dubiley, S., Severinov, K., & Nair, S. K. (2019). Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by the N-formyl of the peptide precursor. Chemical Science, 10(8), 2391-2395.

Wang, Y., Yu, X., & Zhao, H. (2019). Biosystems design by directed evolution. AIChE Journal, [e16716].

Huo, L., Zhao, X., Acedo, J. Z., Estrada, P., Nair, S. K., & van der Donk, W. A. (Accepted/In press). Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae. ChemBioChem.

Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Lim, Y. H., Hoon, S., ... Wong, F. T. (2019). Characterization of Cas proteins for CRISPR-Cas editing in streptomycetes. Biotechnology and bioengineering, 116(9), 2330-2338.

Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H., & Nair, S. K. (2019). Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098. Organic and Biomolecular Chemistry, 17(6), 1506-1518.

Wen, F., Smith, M. R., & Zhao, H. (2019). Construction and Screening of an Antigen-Derived Peptide Library Displayed on Yeast Cell Surface for CD4+ T Cell Epitope Identification. In Methods in Molecular Biology (pp. 213-234). (Methods in Molecular Biology; Vol. 2024). Humana Press Inc..

Shi, S., Liang, Y., Ang, E. L., & Zhao, H. (2019). Delta integration CRISPR-Cas (Di-CRISPR) in saccharomyces cerevisiae. In Methods in Molecular Biology (pp. 73-91). (Methods in Molecular Biology; Vol. 1927). Humana Press Inc..

Sabri, L., Huang, Q., Liu, J. N., & Cunningham, B. T. (2019). Design of anapole mode electromagnetic field enhancement structures for biosensing applications. Optics Express, 27(5), 7196-7212.

Párraga Solórzano, P. K., Yao, J., Rock, C. O., & Kehl-Fie, T. (2019). Disruption of glycolysis by nutritional immunity activates a two-component system that coordinates a metabolic and antihost response by staphylococcus aureus. mBio, 10(4), [e01321-19].

Zhou, Y., Wei, Y., Nanjaraj Urs, A. N., Lin, L., Xu, T., Hu, Y., ... Zhang, Y. (2019). Identification and characterization of a new sulfoacetaldehyde reductase from the human gut bacterium Bifidobacterium kashiwanohense. Bioscience Reports, 39(6), [Y].

Wei, Y., Tan, Y. L., Ang, E. L., & Zhao, H. (Accepted/In press). Identification and Characterization of Citrus Peel Uronic Acid Oxidase. ChemBioChem.

Schlein, L. J., Fadl-Alla, B., Pondenis, H. C., Lezmi, S., Eberhart, C. G., LeBlanc, A. K., ... Fan, T. M. (2019). Immunohistochemical characterization of procaspase-3 overexpression as a druggable target with PAC-1, a procaspase-3 activator, in canine and human brain cancers. Frontiers in Oncology, 9(FEB), [96].

Sweedler, J. V. (Accepted/In press). Is the Power List a Representative List? Analytical chemistry.

Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S., & Sweedler, J. V. (2019). Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry. Analytical chemistry.

Jijakli, K., & Jensen, P. A. (2019). Metabolic modeling of Streptococcus mutans reveals complex nutrient requirements of an oral pathogen. mSystems, 4(5), [e00529].

Nayak, D. D., & Metcalf, W. W. (2019). Methylamine-specific methyltransferase paralogs in Methanosarcina are functionally distinct despite frequent gene conversion. ISME Journal.

Chekan, J. R., Ongpipattanakul, C., Wright, T. R., Zhang, B., Martin Bollinger, J., Rajakovich, L. J., ... Nair, S. K. (2019). Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants. Proceedings of the National Academy of Sciences of the United States of America, 116(27), 13299-13304.

Xie, F., Anapindi, K. D. B., Romanova, E. V., & Sweedler, J. V. (2019). Neuropeptidomics of the mammalian brain. In Neuromethods (pp. 161-177). (Neuromethods; Vol. 146). Humana Press Inc..

Bouvier, J. T., Sernova, N. V., Ghasempur, S., Rodionova, I. A., Vetting, M. W., Al-Obaidi, N. F., ... Rodionov, D. A. (2019). Novel metabolic pathways and regulons for hexuronate utilization in Proteobacteria. Journal of bacteriology, 201(2), [e00431-18].

Acedo, J. Z., Bothwell, I. R., An, L., Trouth, A., Frazier, C., & Van Der Donk, W. A. (2019). O-Methyltransferase-Mediated Incorporation of a β-Amino Acid in Lanthipeptides. Journal of the American Chemical Society, 141(42), 16790-16801.

Cao, T., Morales-Soto, N., Jia, J., Baig, N. F., Dunham, S. J. B., Ellis, J., ... Bohn, P. W. (2019). Spatiotemporal dynamics of molecular messaging in bacterial co-cultures studied by multimodal chemical imaging. In T. Dai, J. Popp, & M. X. Wu (Eds.), Photonic Diagnosis and Treatment of Infections and Inflammatory Diseases II [108630A] (Proceedings of SPIE - The International Society for Optical Engineering; Vol. 10863). SPIE.

Radin, J. N., Zhu, J., Brazel, E. B., McDevitt, C. A., & Kehl-Fiea, T. E. (2019). Synergy between nutritional immunity and independent host defenses contributes to the importance of the MntABC manganese transporter during staphylococcus aureus infection. Infection and immunity, 87(1), [e00642].

Richter, M. F., & Hergenrother, P. J. (2019). The challenge of converting gram-positive-only compounds into broad-spectrum antibiotics. Annals of the New York Academy of Sciences, 1435(1), 18-38.

Bougioukou, D. J., Ting, C. P., Peck, S. C., Mukherjee, S., & van der Donk, W. A. (2019). Use of the dehydrophos biosynthetic enzymes to prepare antimicrobial analogs of alaphosphin. Organic and Biomolecular Chemistry, 17(4), 822-829.

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., ... Erdman, J. W. (2019). 13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study. Nutrition Research, 61, 102-108.

Howe, G. W., & van der Donk, W. A. (2018). 18 O Kinetic Isotope Effects Reveal an Associative Transition State for Phosphite Dehydrogenase Catalyzed Phosphoryl Transfer Journal of the American Chemical Society, 140(51), 17820-17824.

Rack, J. G. M., Ariza, A., Drown, B. S., Henfrey, C., Bartlett, E., Shirai, T., ... Ahel, I. (2018). (ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition. Cell chemical biology, 25(12), 1533-1546.e12.

Drown, B. S., Shirai, T., Rack, J. G. M., Ahel, I., & Hergenrother, P. (2018). Monitoring Poly(ADP-ribosyl)glycohydrolase Activity with a Continuous Fluorescent Substrate. Cell chemical biology, 25(12), 1562-1570.e19.

Reyes, A. C., Plache, D. C., Koudelka, A. P., Amyes, T. L., Gerlt, J. A., & Richard, J. P. (2018). Enzyme Architecture: Breaking Down the Catalytic Cage that Activates Orotidine 5′-Monophosphate Decarboxylase for Catalysis. Journal of the American Chemical Society, 140(50), 17580-17590.

Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., ... Rodriguez-Zas, S. L. (2018). Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia. Frontiers in Systems Neuroscience, 12, [63].

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