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Carl R. Woese Institute for Genomic Biology

Where Science Meets Society

Research Areas

Chen, K. L. A., Liu, X., Zhao, Y. C., Hieronymi, K., Rossi, G., Auvil, L. S., ... Madak-Erdogan, Z. (2018). Long-Term Administration of Conjugated Estrogen and Bazedoxifene Decreased Murine Fecal β-Glucuronidase Activity Without Impacting Overall Microbiome Community. Scientific Reports, 8(1), [8166]. DOI: 10.1038/s41598-018-26506-1

Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., ... Bashir, R. (2018). Pixelated spatial gene expression analysis from tissue. Nature Communications, 9(1), [202]. DOI: 10.1038/s41467-017-02623-9

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A., & Cunningham, B. T. (2018). Quantitative analysis of focal adhesion dynamics using photonic resonator outcoupler microscopy (PROM). Light: Science and Applications, 7(1), [7538]. DOI: 10.1038/s41377-018-0001-5

Zahid, M. U., Ma, L., Lim, S. J., & Smith, A. M. (2018). Single quantum dot tracking reveals the impact of nanoparticle surface on intracellular state. Nature Communications, 9(1), [1830]. DOI: 10.1038/s41467-018-04185-w

Bhandari, P., Novikova, G., Goergen, C. J., & Irudayaraj, J. (2018). Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy. Scientific Reports, 8(1), [3112]. DOI: 10.1038/s41598-018-20363-8

Puleo, G. J., & Milenkovic, O. (2018). Correlation Clustering and Biclustering with Locally Bounded Errors. IEEE Transactions on Information Theory, 64(6), 4105-4119. DOI: 10.1109/TIT.2018.2819696

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L., & Cunningham, B. T. (2018). Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing. Chemosensors, 6(2), [13]. DOI: 10.3390/chemosensors6020013

Phillips, H., Maxwell, E. A., Schaeffer, D. J., & Fan, T. M. (2018). Simulation of spatial diffusion of platinum from carboplatin-impregnated calcium sulfate hemihydrate beads by use of an agarose gelatin tissue phantom. American journal of veterinary research, 79(6), 592-599. DOI: 10.2460/ajvr.79.6.592

Yin, Q., Tang, L., Cai, K., Yang, X., Yin, L., Zhang, Y., ... Cheng, J. (2018). Albumin as a "trojan Horse" for polymeric nanoconjugate transendothelial transport across tumor vasculatures for improved cancer targeting. Biomaterials Science, 6(5), 1189-1200. DOI: 10.1039/c8bm00149a

Chen, K. L., & Madak-Erdogan, Z. (2018). Estrogens and female liver health. Steroids, 133, 38-43. DOI: 10.1016/j.steroids.2017.10.015

Milenkovic, O., Gabrys, R., Kiah, H. M., & Yazdi, S. M. H. T. (2018). Exabytes in a Test Tube: With the right coding, DNA could archive our entire civilization. IEEE Spectrum, 55(5), 40-45. DOI: 10.1109/MSPEC.2018.8352574

Dau, H., Duursma, I., Kiah, H. M., & Milenkovic, O. (Accepted/In press). Repairing Reed-Solomon Codes With Multiple Erasures. IEEE Transactions on Information Theory. DOI: 10.1109/TIT.2018.2827942

Gabrys, R., Yaakobi, E., & Milenkovic, O. (2018). Codes in the Damerau Distance for Deletion and Adjacent Transposition Correction. IEEE Transactions on Information Theory, 64(4), 2550-2570. DOI: 10.1109/TIT.2017.2778143

Smith, B. P., & Madak-Erdogan, Z. (2018). Urban Neighborhood and Residential Factors Associated with Breast Cancer in African American Women: a Systematic Review. Hormones and Cancer, 9(2), 71-81. DOI: 10.1007/s12672-018-0325-x

Satyavolu, N. S. R., Pishevaresfahani, N., Tan, L. H., & Lu, Y. (Accepted/In press). DNA-encoded morphological evolution of bimetallic Pd@Au core-shell nanoparticles from a high-indexed core. Nano Research, 1-13. DOI: 10.1007/s12274-018-2035-7

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., ... Cheng, G. J. (2018). Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity. Small, 14(12), [1703346]. DOI: 10.1002/smll.201703346

Ravanmehr, V., Kim, M., Wang, Z., & Milenkovic, O. (2018). ChIPWig: A random access-enabling lossless and lossy compression method for ChIP-seq data. Bioinformatics, 34(6), 911-919. DOI: 10.1093/bioinformatics/btx685

Cepeda-Plaza, M., McGhee, C. E., & Lu, Y. (2018). Evidence of a General Acid-Base Catalysis Mechanism in the 8-17 DNAzyme. Biochemistry, 57(9), 1517-1522. DOI: 10.1021/acs.biochem.7b01096

Saba, C. F., Vickery, K. R., Clifford, C. A., Burgess, K. E., Phillips, B., Vail, D. M., ... Thamm, D. H. (2018). Rabacfosadine for relapsed canine B-cell lymphoma: Efficacy and adverse event profiles of 2 different doses. Veterinary and Comparative Oncology, 16(1), E76-E82. DOI: 10.1111/vco.12337

Ouyang, L., Wang, Y., Zhu, L., Irudayaraj, J., & Tang, H. (2018). Filtration-Assisted Fabrication of Large-Area Uniform and Long-Term Stable Graphene Isolated Nano-Ag Array Membrane as Surface Enhanced Raman Scattering Substrate. Advanced Materials Interfaces, 5(4), [1701221]. DOI: 10.1002/admi.201701221

Wan, Y., Carlson, J. A., Al-Mulla, S. A., Peng, W., Long, K. D., Kesler, B. A., ... Cunningham, B. T. (2018). Integrated spectroscopic analysis system with low vertical height for measuring liquid or solid assays. Sensors and Actuators, B: Chemical, 255, 935-943. DOI: 10.1016/j.snb.2017.08.126

Maxwell, E. A., Phillips, H., Schaeffer, D. J., & Fan, T. M. (2018). In vitro chemosensitivity of feline injection site-associated sarcoma cell lines to carboplatin. Veterinary Surgery, 47(2), 219-226. DOI: 10.1111/vsu.12709

Zhao, J., Gao, J., Xue, W., Di, Z., Xing, H., Lu, Y., & Li, L. (2018). Upconversion Luminescence-Activated DNA Nanodevice for ATP Sensing in Living Cells. Journal of the American Chemical Society, 140(2), 578-581. DOI: 10.1021/jacs.7b11161

Yazdi, S. M. H. T., Kiah, H. M., Gabrys, R., & Milenkovic, O. (Accepted/In press). Mutually Uncorrelated Primers for DNA-Based Data Storage. IEEE Transactions on Information Theory. DOI: 10.1109/TIT.2018.2792488

Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., ... Bashir, R. (2018). Mobile biosensing using the sensing capabilities of smartphone cameras. In 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017 (Vol. 2018-January, pp. 1-3). Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/IMWS-AMP.2017.8247439

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., ... Bashir, R. (2018). A microfluidic biochip platform for electrical quantification of proteins. Lab on a Chip, 18(10), 1461-1470. DOI: 10.1039/c8lc00033f

Wang, R., Vega, P., Xu, Y., Chen, C. Y., & Irudayaraj, J. (Accepted/In press). Exploring the anti-quorum sensing activity of a d-limonene nanoemulsion for Escherichia coli O157: H7. Journal of Biomedical Materials Research - Part A. DOI: 10.1002/jbm.a.36404

Hassan, U., Zhu, R., & Bashir, R. (2018). Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis. Lab on a Chip, 18(8), 1231-1240. DOI: 10.1039/c8lc00108a

Cunningham, B. T., Liu, J. N., Huang, Q., Canady, T., Long, K. D., Li, N., ... Singamaneni, S. (2018). Photonic crystal resonant coupling to nanoantennas and applications for digital resolution biosensing. In Microscopy Histopathology and Analytics, MICROSCOPY 2018 (Vol. Part F89-MICROSCOPY 2018). OSA - The Optical Society. DOI: 10.1364/MICROSCOPY.2018.MW2A.3

Zhang, J., Xing, H., & Lu, Y. (2018). Translating molecular detections into a simple temperature test using a target-responsive smart thermometer. Chemical Science, 9(16), 3906-3910. DOI: 10.1039/c7sc05325h 

Liu, J. N., Huang, Q., Liu, K. K., Singamaneni, S., & Cunningham, B. T. (2017). Nanoantenna-Microcavity Hybrids with Highly Cooperative Plasmonic-Photonic Coupling. Nano Letters, 17(12), 7569-7577. DOI: 10.1021/acs.nanolett.7b03519

Farnoud (Hassanzadeh), F., Milenkovic, O., Puleo, G. J., & Su, L. (2017). Computing similarity distances between rankings. Discrete Applied Mathematics, 232, 157-175. DOI: 10.1016/j.dam.2017.07.038

Zhang, J., Smaga, L. P., Satyavolu, N. S. R., Chan, J., & Lu, Y. (2017). DNA Aptamer-Based Activatable Probes for Photoacoustic Imaging in Living Mice. Journal of the American Chemical Society, 139(48), 17225-17228. DOI: 10.1021/jacs.7b07913

Chen, K. L. A., Zhao, Y. C., Hieronymi, K., Smith, B. P., & Madak-Erdogan, Z. (2017). Bazedoxifene and conjugated estrogen combination maintains metabolic homeostasis and benefits liver health. PLoS ONE, 12(12), [Y]. DOI: 10.1371/journal.pone.0189911

Taneja, I., Reddy, B., Damhorst, G., Dave Zhao, S., Hassan, U., Price, Z., ... Zhu, R. (2017). Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis. Scientific Reports, 7(1), [10800]. DOI: 10.1038/s41598-017-09766-1

Adelaiye-Ogala, R., Budka, J., Damayanti, N. P., Arrington, J., Ferris, M., Hsu, C. C., ... Pili, R. (2017). EZH2 modifies sunitinib resistance in renal cell carcinoma by kinome reprogramming. Cancer Research, 77(23), 6651-6666. DOI: 10.1158/0008-5472.CAN-17-0899

Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., ... Bashir, R. (2017). Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care. Biomedical Microdevices, 19(4), [73]. DOI: 10.1007/s10544-017-0209-9

Cvetkovic, C., Ferrall-Fairbanks, M. C., Ko, E., Grant, L., Kong, H., Platt, M. O., & Bashir, R. (2017). Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines. Scientific Reports, 7(1), [3775]. DOI: 10.1038/s41598-017-03723-8

Inan, H., Wang, S., Inci, F., Baday, M., Zangar, R., Kesiraju, S., ... Demirci, U. (2017). Isolation, Detection, and Quantification of Cancer Biomarkers in HPV-Associated Malignancies. Scientific Reports, 7(1), [3322]. DOI: 10.1038/s41598-017-02672-6

Hossein TabatabaeiYazdi, S. M., Gabrys, R., & Milenkovic, O. (2017). Portable and Error-Free DNA-Based Data Storage. Scientific Reports, 7(1), [5011]. DOI: 10.1038/s41598-017-05188-1

Race, C. M., Kwon, L. E., Foreman, M. T., Huang, Q., Inan, H., Kesiraju, S., ... Cunningham, B. T. (2017). An Automated Microfluidic Assay for Photonic Crystal Enhanced Detection and Analysis of an Antiviral Antibody Cancer Biomarker in Serum. IEEE Sensors Journal. DOI: 10.1109/JSEN.2017.2777529

Wan, Y., Krueger, N. A., Ocier, C. R., Su, P., Braun, P. V., & Cunningham, B. T. (2017). Resonant Mode Engineering of Photonic Crystal Sensors Clad with Ultralow Refractive Index Porous Silicon Dioxide. Advanced Optical Materials, 5(21), [1700605]. DOI: 10.1002/adom.201700605

Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., ... Bashir, R. (2017). Detection of methylation on dsDNA using nanopores in a MoS2 membrane. Nanoscale, 9(39), 14836-14845. DOI: 10.1039/c7nr03092d

Raman, R., & Bashir, R. (2017). Biomimicry, Biofabrication, and Biohybrid Systems: The Emergence and Evolution of Biological Design. Advanced Healthcare Materials, 6(20), [1700496]. DOI: 10.1002/adhm.201700496

Bogdanov, S., Shalaginov, M. Y., Akimov, A. V., Lagutchev, A., Liu, J., Woods, D., ... Shalaev, V. M. (2017). Spin contrast of purcell-enhanced nitrogen-vacancy centers in diamond. In 2017 Conference on Lasers and Electro-Optics, CLEO 2017 - Proceedings (Vol. 2017-January, pp. 1-2). Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1364/CLEO_QELS.2017.FW4H.3

See, G. G., Gao, A., Xu, L., Nuzzo, R., Gong, S., & Cunningham, B. T. (2017). Quantum dot emission modulation using piezoelectric photonic crystal MEMS resonators. Optics Express, 25(21), 25831-25841. DOI: 10.1364/OE.25.025831

Aguero, T., Jin, Z., Chorghade, S., Kalsotra, A., King, M. L., & Yang, J. (2017). Maternal dead-end 1 promotes translation of nanos1 by binding the eiF3 complex. Development (Cambridge), 144(20), 3755-3765. DOI: 10.1242/dev.152611

Liu, D. C., Seimetz, J., Lee, K. Y., Kalsotra, A., Chung, H. J., Lu, H., & Tsai, N. P. (2017). Mdm2 mediates FMRP- and Gp1 mGluR-dependent protein translation and neural network activity. Human Molecular Genetics, 26(20), 3895-3908. DOI: 10.1093/hmg/ddx276

Li, P., Dau, H., Puleo, G., & Milenkovic, O. (2017). Motif clustering and overlapping clustering for social network analysis. In INFOCOM 2017 - IEEE Conference on Computer Communications [8056956] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/INFOCOM.2017.8056956

Peterson, R. D., Wilund, K. R., Cunningham, B. T., & Andrade, J. E. (2017). Comparison of methods study between a photonic crystal biosensor and certified ELISA to measure biomarkers of iron deficiency in chronic kidney disease patients. Sensors (Switzerland), 17(10), [2203]. DOI: 10.3390/s17102203

Dau, H., & Milenkovic, O. (2017). Latent Network Features and Overlapping Community Discovery via Boolean Intersection Representations. IEEE/ACM Transactions on Networking, 25(5), 3219-3234. [8004484]. DOI: 10.1109/TNET.2017.2728638

Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., ... Schook, L. B. (2017). 3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions. ACS Biomaterials Science and Engineering, 3(9), 1980-1987. DOI: 10.1021/acsbiomaterials.6b00176

Reed, J. H., Shi, Y., Zhu, Q., Chakraborty, S., Mirts, E. N., Petrik, I. D., ... Lu, Y. (2017). Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism. Journal of the American Chemical Society, 139(35), 12209-12218. DOI: 10.1021/jacs.7b05800

Roy, J., Wycislo, K. L., Pondenis, H., Fan, T. M., & Das, A. (2017). Comparative proteomic investigation of metastatic and non-metastatic osteosarcoma cells of human and canine origin. PloS one, 12(9), [e0183930]. DOI: 10.1371/journal.pone.0183930

Li, P., & Milenkovic, O. (2017). Multiclass MinMax rank aggregation. In 2017 IEEE International Symposium on Information Theory, ISIT 2017 (pp. 3000-3004). [8007080] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ISIT.2017.8007080

Dau, H., & Milenkovic, O. (2017). Optimal repair schemes for some families of full-length reed-solomon codes. In 2017 IEEE International Symposium on Information Theory, ISIT 2017 (pp. 346-350). [8006547] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ISIT.2017.8006547

Dau, H., Duursma, I., Kiah, H. M., & Milenkovic, O. (2017). Repairing reed-solomon codes with two erasures. In 2017 IEEE International Symposium on Information Theory, ISIT 2017 (pp. 351-355). [8006548] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ISIT.2017.8006548

Gabrys, R., & Milenkovic, O. (2017). The hybrid k-deck problem: Reconstructing sequences from short and long traces. In 2017 IEEE International Symposium on Information Theory, ISIT 2017 (pp. 1306-1310). [8006740] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ISIT.2017.8006740

Gabrys, R., Kiah, H. M., & Milenkovic, O. (2017). Asymmetric Lee Distance Codes for DNA-Based Storage. IEEE Transactions on Information Theory, 63(8), 4982-4995. [7918539]. DOI: 10.1109/TIT.2017.2700847

Wu, Z., Fan, H., Satyavolu, N. S. R., Wang, W. J., Lake, R., Jiang, J. H., & Lu, Y. (2017). Imaging Endogenous Metal Ions in Living Cells Using a DNAzyme–Catalytic Hairpin Assembly Probe. Angewandte Chemie - International Edition, 56(30), 8721-8725. DOI: 10.1002/anie.201703540

Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., ... Bashir, R. (2017). A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification. Nature Communications, 8, [15949]. DOI: 10.1038/ncomms15949

Skariah, G., Seimetz, J., Norsworthy, M., Lannom, M. C., Kenny, P. J., Elrakhawy, M., ... Ceman, S. (2017). Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain. BMC Biology, 15(1), [54]. DOI: 10.1186/s12915-017-0387-1

Amos, J. R., Bashir, R., Cross, K. J., Herman, G. L., Loewenstein, J., Pool, M., & Silverman, D. (2017). Defining the frontiers of bioengineering education at Illinois and beyond. ASEE Annual Conference and Exposition, Conference Proceedings, 2017-June.

Zahid, M. U., Groundwater, E. S., Li, Y., Elliott, C. M., Smith, A. M., Trinkle, D. R., ... Jensen, K. (2017). Work in progress: Design of a first-year rhetoric course for engineering students. ASEE Annual Conference and Exposition, Conference Proceedings, 2017-June.

Raman, R., Grant, L., Seo, Y., Cvetkovic, C., Gapinske, M., Palasz, A., ... Bashir, R. (2017). Damage, Healing, and Remodeling in Optogenetic Skeletal Muscle Bioactuators. Advanced Healthcare Materials, 6(12), [1700030]. DOI: 10.1002/adhm.201700030

Ramirez Cohen, M., Mendelman, N., Radoul, M., Wilson, T. D., Savelieff, M. G., Zimmermann, H., ... Goldfarb, D. (2017). Thiolate Spin Population of Type I Copper in Azurin Derived from33S Hyperfine Coupling. Inorganic Chemistry, 56(11), 6163-6174. DOI: 10.1021/acs.inorgchem.7b00167

McGhee, C. E., Loh, K. Y., & Lu, Y. (2017). DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells. Current Opinion in Biotechnology, 45, 191-201. DOI: 10.1016/j.copbio.2017.03.002

Yum, K., Wang, E. T., & Kalsotra, A. (2017). Myotonic dystrophy: disease repeat range, penetrance, age of onset, and relationship between repeat size and phenotypes. Current Opinion in Genetics and Development, 44, 30-37. DOI: 10.1016/j.gde.2017.01.007

Zhang, D., Lee, J., Sun, M. B., Pei, Y., Chu, J., Gillette, M. U., ... Kilian, K. A. (2017). Combinatorial Discovery of Defined Substrates That Promote a Stem Cell State in Malignant Melanoma. ACS Central Science, 3(5), 381-393. DOI: 10.1021/acscentsci.6b00329

Lim, S. J., Schleife, A., & Smith, A. M. (2017). Optical determination of crystal phase in semiconductor nanocrystals. Nature Communications, 8, [14849]. DOI: 10.1038/ncomms14849

Thamm, D. H., Vail, D. M., Post, G. S., Fan, T. M., Phillips, B. S., Axiak-Bechtel, S., ... Ruslander, D. A. (2017). Alternating Rabacfosadine/Doxorubicin: Efficacy and Tolerability in Naïve Canine Multicentric Lymphoma. Journal of Veterinary Internal Medicine, 31(3), 872-878. DOI: 10.1111/jvim.14700

Fan, H., Zhang, X., & Lu, Y. (2017). Recent advances in DNAzyme-based gene silencing. Science China Chemistry, 60(5), 591-601. DOI: 10.1007/s11426-016-0472-1

Fan, T. M. (2017). Cancer Patients. In Veterinary Anesthesia and Analgesia: The Fifth Edition of Lumb and Jones (pp. 993-1003). wiley. DOI: 10.1002/9781119421375.ch55

Madak-Erdogan, Z., Charn, T. H., Jiang, Y., Liu, E. T., Katzenellenbogen, J. A., & Katzenellenbogen, B. S. (2017). Corrigendum to: Integrative genomics of gene and metabolic regulation by estrogen receptors and, and their coregulators (Molecular Systems Biology, (2014), 9, 1, (676), 10.1038/msb.2013.28). Molecular Systems Biology, 13(4), [929]. DOI: 10.15252/msb.20177595

Lundberg, A. P., Francis, J. M., Pajak, M., Parkinson, E. I., Wycislo, K. L., Rosol, T. J., ... Fan, T. M. (2017). Pharmacokinetics and derivation of an anticancer dosing regimen for the novel anti-cancer agent isobutyl-deoxynyboquinone (IB-DNQ), a NQO1 bioactivatable molecule, in the domestic felid species. Investigational New Drugs, 35(2), 134-144. DOI: 10.1007/s10637-016-0414-z

Wang, H., Wang, R., Cai, K., He, H., Liu, Y., Yen, J., ... Cheng, J. (2017). Selective in vivo metabolic cell-labeling-mediated cancer targeting. Nature Chemical Biology, 13(4), 415-424. DOI: 10.1038/nchembio.2297

Xing, H., Bai, Y., Bai, Y., Tan, L. H., Tao, J., Pedretti, B., ... Zimmerman, S. C. (2017). Bottom-Up Strategy To Prepare Nanoparticles with a Single DNA Strand. Journal of the American Chemical Society, 139(10), 3623-3626. DOI: 10.1021/jacs.7b00065

Raman, R., Cvetkovic, C., & Bashir, R. (2017). A modular approach to the design, fabrication, and characterization of muscle-powered biological machines. Nature Protocols, 12(3), 519-533. DOI: 10.1038/nprot.2016.185

Corbin, E. A., Adeniba, O. O., Cangellaris, O. V., King, W. P., & Bashir, R. (2017). Evidence of differential mass change rates between human breast cancer cell lines in culture. Biomedical Microdevices, 19(1), [10]. DOI: 10.1007/s10544-017-0151-x

Arif, W., Datar, G., & Kalsotra, A. (2017). Intersections of post-transcriptional gene regulatory mechanisms with intermediary metabolism. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 1860(3), 349-362. DOI: 10.1016/j.bbagrm.2017.01.004

Lewis, C. J. T., Pan, T., & Kalsotra, A. (2017). RNA modifications and structures cooperate to guide RNA-protein interactions. Nature Reviews Molecular Cell Biology, 18(3), 202-210. DOI: 10.1038/nrm.2016.163

Bhagi-Damodaran, A., Michael, M. A., Zhu, Q., Reed, J., Sandoval, B. A., Mirts, E. N., ... Lu, Y. (2017). Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases. Nature Chemistry, 9(3), 257-263. DOI: 10.1038/nchem.2643

Choudhury, S. R., Ordaz, J., Lo, C. L., Damayanti, N. P., Zhou, F., & Irudayaraj, J. (2017). Zinc oxide nanoparticles-induced reactive oxygen species promotes multimodal cyto- and epigenetic toxicity. Toxicological Sciences, 156(1), 261-274. DOI: 10.1093/toxsci/kfw252

Yu, Y., Cui, C., Wang, J., & Lu, Y. (2017). Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids. Science China Chemistry, 60(2), 188-200. DOI: 10.1007/s11426-016-0343-2

Yu, Y., Petrik, I. D., Chacón, K. N., Hosseinzadeh, P., Chen, H., Blackburn, N. J., & Lu, Y. (2017). Effect of circular permutation on the structure and function of type 1 blue copper center in azurin. Protein Science, 26(2), 218-226. DOI: 10.1002/pro.3071

Liu, J. N., Liu, K. K., Huang, Q., Singamaneni, S., & Cunningham, B. T. (2017). Photonic crystal coupled plasmonic hybrid nanosensors. In 2016 IEEE Photonics Conference, IPC 2016 (pp. 198-199). [7831038] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/IPCon.2016.7831038

Inan, H., Poyraz, M., Inci, F., Lifson, M. A., Baday, M., Cunningham, B. T., & Demirci, U. (2017). Photonic crystals: Emerging biosensors and their promise for point-of-care applications. Chemical Society Reviews, 46(2), 366-388. DOI: 10.1039/c6cs00206d

Race, C. M., Kwon, L., & Cunningham, B. T. (2017). Achieving uniformity and reproducibility for photonic crystal fluorescence enhanced disease diagnostic microarrays. In IEEE Sensors, SENSORS 2016 - Proceedings [7808961] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ICSENS.2016.7808961

Kwon, L., Race, C., Foreman, M., & Cunningham, B. (2017). An automated microfluidic assay for the detection of cancer biomarkers in serum using photonic crystal enhanced fluorescence. In IEEE Sensors, SENSORS 2016 - Proceedings [7808960] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ICSENS.2016.7808960

Carlson, J. A., Wan, Y., Kesler, B. A., Peng, W., Al-Mulla, S. A., Su, P., ... Cunningham, B. T. (2017). Integration of linear variable filters on CMOS for compact emission and absorption sensing. In IEEE Sensors, SENSORS 2016 - Proceedings [7808414] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ICSENS.2016.7808414

Huang, Q., Peh, J., Hergenrother, P. J., & Cunningham, B. T. (2017). Porous photonic crystal external cavity laser biosensor for drug screening. In IEEE Sensors, SENSORS 2016 - Proceedings [7808619] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ICSENS.2016.7808619

Yu, H., Le, H., Lumetta, S., Cunningham, B. T., Kaale, E., & Layloff, T. (2017). Smartphone-based thin layer chromatography for the discrimination of falsified medicines. In IEEE Sensors, SENSORS 2016 - Proceedings [7808847] Institute of Electrical and Electronics Engineers Inc.. DOI: 10.1109/ICSENS.2016.7808847

Wu, Z., Xu, E., Jiao, A., Jin, Z., & Irudayaraj, J. (2017). Bimodal counterpropagating-responsive sensing material for the detection of histamine. RSC Advances, 7(71), 44933-44944. DOI: 10.1039/c7ra07362c

Duarte-Guevara, C., Swaminathan, V., Reddy, B., Wen, C. H., Huang, Y. J., Huang, J. C., ... Bashir, R. (2017). Characterization of a 1024 × 1024 DG-BioFET platform. Sensors and Actuators, B: Chemical, 250, 100-110. DOI: 10.1016/j.snb.2017.04.107

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