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Carl R. Woese Institute for Genomic Biology

Where Science Meets Society

Research Areas

Le, P., Lim, S. J., Baculis, B. C., Chung, H. J., Kilian, K. A., & Smith, A. M. (2019). Counting growth factors in single cells with infrared quantum dots to measure discrete stimulation distributions. Nature communications, 10(1), [909].

Liu, K., Pan, C., Kuhn, A., Nievergelt, A. P., Fantner, G. E., Milenkovic, O., & Radenovic, A. (2019). Detecting topological variations of DNA at single-molecule level. Nature communications, 10(1), [3].

Lee, J. Y., Bai, Y., Chembazhi, U. V., Peng, S., Yum, K., Luu, L. M., ... Zimmerman, S. C. (2019). Intrinsically cell-penetrating multivalent and multitargeting ligands for myotonic dystrophy type 1. Proceedings of the National Academy of Sciences of the United States of America, 116(18), 8709-8714.

Satyavolu, N. S. R., Peinetti, A. S., Wang, Y., Ali, A. S., Lin, J. W., & Lu, Y. (2019). Silver-Assisted Synthesis of High-Indexed Palladium Tetrahexahedral Nanoparticles and Their Morphological Variants. Chemistry of Materials, 31(8), 2923-2929.

Mirts, E. N., Bhagi-Damodaran, A., & Lu, Y. (2019). Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors. Accounts of chemical research, 52(4), 935-944.

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., ... Cheng, G. J. (2019). Correction to: Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps (Advanced Materials, (2016), 28, 41, (9152-9162), 10.1002/adma.201602497). Advanced Materials, 31(14), [1900190].

Kulkoyluoglu-Cotul, E., Smith, B. P., Wrobel, K., Zhao, Y. C., Chen, K. L. A., Hieronymi, K., ... Madak-Erdogan, Z. (2019). Combined Targeting of Estrogen Receptor Alpha and XPO1 Prevent Akt Activation, Remodel Metabolic Pathways and Induce Autophagy to Overcome Tamoxifen Resistance. Cancers, 11(4), [479].

Zhang, J. J., & Lu, Y. (2019). Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins. Clinical Chemistry, 65(4), 507-509.

Dikanov, S., Berry, S. M., & Lu, Y. (2019). HYSCORE Insights into the Distribution of the Unpaired Spin Density in an Engineered Cu A Site in Azurin and Its His120Gly Variant Inorganic Chemistry, 58(7), 4437-4445.

Young, T. J., Cui, Y., Irudayaraj, J. M. K., & Kirchmaier, A. L. (2019). Modulation of gene silencing by Cdc7p via H4 K16 acetylation and phosphorylation of chromatin assembly factor CAF-1 in saccharomyces cerevisiae. Genetics, 211(4), 1219-1237.

Damayanti, N. P., Buno, K., Voytik Harbin, S. L., & Irudayaraj, J. M. K. (2019). Epigenetic Process Monitoring in Live Cultures with Peptide Biosensors. ACS Sensors, 4(3), 562-565.

Zhang, J. J., Lan, T., & Lu, Y. (2019). Molecular Engineering of Functional Nucleic Acid Nanomaterials toward In Vivo Applications. Advanced Healthcare Materials, 8(6), [1801158].

Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M., Im, S. G., ... Kong, H. J. (2019). Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction. Advanced Science, 6(6), [1801521].

Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., ... King, W. P. (2019). Monolayer MoS 2 Nanoribbon Transistors Fabricated by Scanning Probe Lithography Nano Letters, 19(3), 2092-2098.

Bibak, K., & Milenkovic, O. (2019). Explicit formulas for the weight enumerators of some classes of deletion correcting codes. IEEE Transactions on Communications, 67(3), 1809-1816. [8573841].

Ren, W., Mohammed, S. I., Wereley, S., & Irudayaraj, J. M. K. (2019). Magnetic Focus Lateral Flow Sensor for Detection of Cervical Cancer Biomarkers. Analytical chemistry, 91(4), 2876-2884.

Seimetz, J., Arif, W., Bangru, S., Hernaez, M., & Kalsotra, A. (2019). Cell-type specific polysome profiling from mammalian tissues. Methods, 155, 131-139.

Ren, W., Ballou, D. R., FitzGerald, R., & Irudayaraj, J. M. K. (2019). Plasmonic enhancement in lateral flow sensors for improved sensing of E. coli O157:H7. Biosensors and Bioelectronics, 126, 324-331.

Liu, W., Cui, Y., Ren, W., & Irudayaraj, J. M. K. (2019). Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer. Clinical epigenetics, 11(1), [16].

Aguirre, M. Á., Long, K. D., Canals, A., & Cunningham, B. T. (2019). Point-of-use detection of ascorbic acid using a spectrometric smartphone-based system. Food Chemistry, 272, 141-147.

Woodburn, E. V., Long, K. D., & Cunningham, B. T. (2019). Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer. IEEE Sensors Journal, 19(2), 508-514. [8494768].

Kumar, P., Liu, J., Motlag, M., Tong, L., Hu, Y., Huang, X., ... Cheng, G. J. (2019). Laser Shock Tuning Dynamic Interlayer Coupling in Graphene-Boron Nitride Moiré Superlattices. Nano Letters, 19(1), 283-291.

Cui, C., Reed, J. H., Mirts, E. N., & Lu, Y. (2019). CHAPTER 2: Design and Engineering of Heme Enzymes with O 2 -dependent Catalytic Activity. In M. Ikeda-Saito, & E. Raven (Eds.), Dioxygen-dependent Heme Enzymes (13 ed., pp. 37-62). (RSC Metallobiology; Vol. 2019-January, No. 13). Royal Society of Chemistry.

Kulkoyluoglu-Cotul, E., Arca, A., & Madak-Erdogan, Z. (2019). Crosstalk between Estrogen Signaling and Breast Cancer Metabolism. Trends in Endocrinology and Metabolism, 30(1), 25-38.

Sabri, L., Huang, Q., Liu, J. N., & Cunningham, B. T. (2019). Design of anapole mode electromagnetic field enhancement structures for biosensing applications. Optics Express, 27(5), 7196-7212.

Satyavolu, N. S. R., Loh, K. Y., Tan, L. H., & Lu, Y. (2019). Discovery of and Insights into DNA “Codes” for Tunable Morphologies of Metal Nanoparticles. Small, [1900975].

Watson, M. K., Mitchell, M. A., Stern, A. W., Labelle, A. L., Joslyn, S., Fan, T. M., ... Marshall, K. (2019). EVALUATING THE CLINICAL AND PHYSIOLOGICAL EFFECTS OF LONG-TERM ULTRAVIOLET B RADIATION ON RABBITS (ORYCTOLAGUS CUNICULUS). Journal of Exotic Pet Medicine, 28, 43-55.

Madak-Erdogan, Z., Band, S., Zhao, Y. C., Smith, B. P., Kulkoyluoglu-Cotul, E., Zuo, Q., ... Flaws, J. A. (2019). Free fatty acids rewire cancer metabolism in obesity-associated breast cancer via estrogen receptor and mTOR signaling. Cancer Research, 79(10), 2494-2510.

Roy, J., Dibaeinia, P., Fan, T. M., Sinha, S., & Das, A. (2019). Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells. Journal of Lipid Research, 60(2), 375-387.

Schlein, L. J., Fadl-Alla, B., Pondenis, H. C., Lezmi, S., Eberhart, C. G., LeBlanc, A. K., ... Fan, T. M. (2019). Immunohistochemical characterization of procaspase-3 overexpression as a druggable target with PAC-1, a procaspase-3 activator, in canine and human brain cancers. Frontiers in Oncology, 9(FEB), [96].

Dowling, M., Samuelson, J. P., Fadl-Alla, B., Pondenis, H. C., Byrum, M., Barger, A. M., & Fan, T. M. (2019). Overexpression of prostate specific membrane antigen by canine hemangiosarcoma cells provides opportunity for the molecular detection of disease burdens within hemorrhagic body cavity effusions. PLoS One, 14(1), [e0210297].

Aguirre, M. Á., Long, K. D., & Cunningham, B. T. (2019). Spectrometric Smartphone-Based System for Ibuprofen Quantification in Commercial Dosage Tablets. Journal of Pharmaceutical Sciences.

Sabuncu, S., Reed, J. H., Lu, Y., & Moënne-Loccoz, P. (2018). Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle. Journal of the American Chemical Society, 140(50), 17389-17393.

Yang, Z., Loh, K. Y., Chu, Y. T., Feng, R., Satyavolu, N. S. R., Xiong, M., ... Lu, Y. (2018). Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles. Journal of the American Chemical Society, 140(50), 17656-17665.

Ravanmehr, V., Puleo, G. J., Bolouki, S., & Milenkovic, O. (2018). Paired threshold graphs. Discrete Applied Mathematics, 250, 291-308.

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., ... Adams, M. WW. (2018). A new era for electron bifurcation. Current Opinion in Chemical Biology, 47, 32-38.

Liu, Y., Le, P., Lim, S. J., Ma, L., Sarkar, S., Han, Z., ... Smith, A. M. (2018). Enhanced mRNA FISH with compact quantum dots. Nature communications, 9(1), [4461].

Chen, K. L. A., Liu, X., Zhao, Y. C., Hieronymi, K., Rossi, G., Auvil, L. S., ... Madak-Erdogan, Z. (2018). Long-Term Administration of Conjugated Estrogen and Bazedoxifene Decreased Murine Fecal β-Glucuronidase Activity Without Impacting Overall Microbiome Community. Scientific Reports, 8(1), [8166].

Burton, J. H., Mazcko, C., LeBlanc, A., Covey, J. M., Ji, J., Kinders, R. J., ... Pommier, Y. (2018). NCI comparative oncology program testing of non-camptothecin indenoisoquinoline topoisomerase I inhibitors in naturally occurring canine lymphoma. Clinical Cancer Research, 24(23), 5830-5840.

Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., ... Bashir, R. (2018). Pixelated spatial gene expression analysis from tissue. Nature communications, 9(1), [202].

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A., & Cunningham, B. T. (2018). Quantitative analysis of focal adhesion dynamics using photonic resonator outcoupler microscopy (PROM). Light: Science and Applications, 7(1), [7538].

Zahid, M. U., Ma, L., Lim, S. J., & Smith, A. M. (2018). Single quantum dot tracking reveals the impact of nanoparticle surface on intracellular state. Nature communications, 9(1), [1830].

Bhandari, P., Novikova, G., Goergen, C. J., & Irudayaraj, J. M. K. (2018). Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy. Scientific Reports, 8(1), [3112].

Svec, R. L., Furiassi, L., Skibinski, C. G., Fan, T. M., Riggins, G. J., & Hergenrother, P. (2018). Tunable Stability of Imidazotetrazines Leads to a Potent Compound for Glioblastoma. ACS chemical biology, 13(11), 3206-3216.

Akbar, Z., Zahoor, T., Huma, N., Jamil, A., Ayesha, H., & Irudayaraj, J. M. K. (2018). Electrospun probiotics: An alternative for encapsulation. Journal of Biological Regulators and Homeostatic Agents, 32(6), 1551-1556.

Wang, Y., Reddy Satyavolu, N. S., & Lu, Y. (2018). Sequence-specific control of inorganic nanomaterials morphologies by biomolecules. Current Opinion in Colloid and Interface Science, 38, 158-169.

Smith, L., Kohli, M., & Smith, A. M. (2018). Expanding the Dynamic Range of Fluorescence Assays through Single-Molecule Counting and Intensity Calibration. Journal of the American Chemical Society, 140(42), 13904-13912.

Yu, Z., Zhou, W., Ma, G., Li, Y., Fan, L., Li, X., & Lu, Y. (2018). Insights into the Competition between K+ and Pb2+ Binding to a G-Quadruplex and Discovery of a Novel K+-Pb2+-Quadruplex Intermediate. Journal of Physical Chemistry B, 122(40), 9382-9388.

Dau, H., Duursma, I. M., Kiah, H. M., & Milenkovic, O. (2018). Repairing Reed-Solomon Codes With Multiple Erasures. IEEE Transactions on Information Theory, 64(10), 6567-6582. [8340062].

Bangru, S., Arif, W., Seimetz, J., Bhate, A., Chen, J., Rashan, E. H., ... Kalsotra, A. (2018). Alternative splicing rewires Hippo signaling pathway in hepatocytes to promote liver regeneration. Nature Structural and Molecular Biology, 25(10), 928-939.

Mirts, E. N., Petrik, I. D., Hosseinzadeh, P., Nilges, M. J., & Lu, Y. (2018). A designed heme-[4Fe-4S] metalloenzyme catalyzes sulfite reduction like the native enzyme. Science, 361(6407), 1098-1101.

Mukherjee, S., Mukherjee, M., Mukherjee, A., Bhagi-Damodaran, A., Lu, Y., & Dey, A. (2018). O 2 Reduction by Biosynthetic Models of Cytochrome c Oxidase: Insights into Role of Proton Transfer Residues from Perturbed Active Sites Models of CcO. ACS Catalysis, 8(9), 8915-8924.

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J. A., ... Bashir, R. (2018). 3D printing for preoperative planning and surgical training: a review. Biomedical Microdevices, 20(3), [65].

Satyavolu, N. S. R., Pishevaresfahani, N., Tan, L. H., & Lu, Y. (2018). DNA-encoded morphological evolution of bimetallic Pd@Au core-shell nanoparticles from a high-indexed core. Nano Research, 11(9), 4549-4561.

Tabatabaei Yazdi, S. M. H., Kiah, H. M., Gabrys, R., & Milenkovic, O. (2018). Mutually uncorrelated primers for DNA-based data storage. IEEE Transactions on Information Theory, 64(9), 6283-6296. [8255669].

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., ... Bashir, R. (2018). Point-of-care sensors for the management of sepsis. Nature Biomedical Engineering, 2(9), 640-648.

Anorma, C., Hedhli, J., Bearrood, T. E., Pino, N. W., Gardner, S. H., Inaba, H., ... Chan, J. K. F. (2018). Surveillance of Cancer Stem Cell Plasticity Using an Isoform-Selective Fluorescent Probe for Aldehyde Dehydrogenase 1A1. ACS Central Science, 4(8), 1045-1055.

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., ... Bashir, R. (2018). Correction to: Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines (Advanced Functional Materials, (2018), 28, 23, (1801145), 10.1002/adfm.201801145). Advanced Functional Materials, 28(33), [1804580].

Gabrys, R., & Milenkovic, O. (2018). Unique Reconstruction of Coded Sequences from Multiset Substring Spectra. In 2018 IEEE International Symposium on Information Theory, ISIT 2018 (Vol. 2018-June, pp. 2540-2544). [8437909] Institute of Electrical and Electronics Engineers Inc..

Bibak, K., & Milenkovic, O. (2018). Weight Enumerators of Some Classes of Deletion Correcting Codes. In 2018 IEEE International Symposium on Information Theory, ISIT 2018 (Vol. 2018-June, pp. 431-435). [8437121] Institute of Electrical and Electronics Engineers Inc..

Sheung, J. Y., Ge, P., Lim, S. J., Lee, S. H., Smith, A. M., & Selvin, P. R. (2018). Structural Contributions to Hydrodynamic Diameter for Quantum Dots Optimized for Live-Cell Single-Molecule Tracking. Journal of Physical Chemistry C, 122(30), 17406-17412.

Zhang, J., & Lu, Y. (2018). Biocomputing for Portable, Resettable, and Quantitative Point-of-Care Diagnostics: Making the Glucose Meter a Logic-Gate Responsive Device for Measuring Many Clinically Relevant Targets. Angewandte Chemie - International Edition, 57(31), 9702-9706.

Roy, J., Watson, J. E., Hong, I. S., Fan, T. M., & Das, A. (2018). Antitumorigenic Properties of Omega-3 Endocannabinoid Epoxides. Journal of Medicinal Chemistry, 61(13), 5569-5579.

Bhagi-Damodaran, A., Reed, J. H., Zhu, Q., Shi, Y., Hosseinzadeh, P., Sandoval, B. A., ... Lu, Y. (2018). Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase. Proceedings of the National Academy of Sciences of the United States of America, 115(24), 6195-6200.

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., ... Bashir, R. (2018). Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines. Advanced Functional Materials, 28(23), [1801145].

Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., ... Rogers, J. A. (2018). Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants. Advanced Energy Materials, 8(16), [1703035].

Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C., & Bashir, R. (2018). Robust label-free microRNA detection using one million ISFET array. Biomedical Microdevices, 20(2).

Puleo, G. J., & Milenkovic, O. (2018). Correlation Clustering and Biclustering with Locally Bounded Errors. IEEE Transactions on Information Theory, 64(6), 4105-4119.

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L., & Cunningham, B. T. (2018). Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing. Chemosensors, 6(2), [13].

Phillips, H., Maxwell, E. A., Schaeffer, D. J., & Fan, T. M. (2018). Simulation of spatial diffusion of platinum from carboplatin-impregnated calcium sulfate hemihydrate beads by use of an agarose gelatin tissue phantom. American journal of veterinary research, 79(6), 592-599.

Yin, Q., Tang, L., Cai, K., Yang, X., Yin, L., Zhang, Y., ... Cheng, J. (2018). Albumin as a "trojan Horse" for polymeric nanoconjugate transendothelial transport across tumor vasculatures for improved cancer targeting. Biomaterials Science, 6(5), 1189-1200.

Chen, K. L., & Madak-Erdogan, Z. (2018). Estrogens and female liver health. Steroids, 133, 38-43.

Milenkovic, O., Gabrys, R., Kiah, H. M., & Yazdi, S. M. H. T. (2018). Exabytes in a Test Tube: With the right coding, DNA could archive our entire civilization. IEEE Spectrum, 55(5), 40-45.

Gabrys, R., Yaakobi, E., & Milenkovic, O. (2018). Codes in the Damerau Distance for Deletion and Adjacent Transposition Correction. IEEE Transactions on Information Theory, 64(4), 2550-2570.

Smith, B. P., & Madak-Erdogan, Z. (2018). Urban Neighborhood and Residential Factors Associated with Breast Cancer in African American Women: a Systematic Review. Hormones and Cancer, 9(2), 71-81.

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., ... Cheng, G. J. (2018). Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity. Small, 14(12), [1703346].

Ravanmehr, V., Kim, M., Wang, Z., & Milenkovic, O. (2018). ChIPWig: A random access-enabling lossless and lossy compression method for ChIP-seq data. Bioinformatics, 34(6), 911-919.

Cepeda-Plaza, M., McGhee, C. E., & Lu, Y. (2018). Evidence of a General Acid-Base Catalysis Mechanism in the 8-17 DNAzyme. Biochemistry, 57(9), 1517-1522.

Jaiswal, M., Haelterman, N. A., Sandoval, H., Xiong, B., Donti, T., Kalsotra, A., ... Bellen, H. J. (2018). Erratum: Correction: Impaired Mitochondrial Energy Production Causes Light-Induced Photoreceptor Degeneration Independent of Oxidative Stress (PLoS biology (2015) 13 7 (e1002197)). PLoS biology, 16(3), e1002622.

Saba, C. F., Vickery, K. R., Clifford, C. A., Burgess, K. E., Phillips, B., Vail, D. M., ... Thamm, D. H. (2018). Rabacfosadine for relapsed canine B-cell lymphoma: Efficacy and adverse event profiles of 2 different doses. Veterinary and comparative oncology, 16(1), E76-E82.

Ouyang, L., Wang, Y., Zhu, L., Irudayaraj, J. M. K., & Tang, H. (2018). Filtration-Assisted Fabrication of Large-Area Uniform and Long-Term Stable Graphene Isolated Nano-Ag Array Membrane as Surface Enhanced Raman Scattering Substrate. Advanced Materials Interfaces, 5(4), [1701221].

Race, C. M., Kwon, L. E., Foreman, M. T., Huang, Q., Inan, H., Kesiraju, S., ... Cunningham, B. T. (2018). An Automated Microfluidic Assay for Photonic Crystal Enhanced Detection and Analysis of an Antiviral Antibody Cancer Biomarker in Serum. IEEE Sensors Journal, 18(4), 1464-1473. [8119803].

Liu, J. N., Huang, Q., Liu, K. K., Singamaneni, S., & Cunningham, B. T. (2018). Nanoantenna-microcavity hybrid resonators with highly cooperative plasmonic-photonic coupling. In 2017 IEEE Photonics Conference (IPC) Part II (Vol. 2018-January, pp. 1-2). Institute of Electrical and Electronics Engineers Inc..

Wan, Y., Carlson, J. A., Al-Mulla, S. A., Peng, W., Long, K. D., Kesler, B. A., ... Cunningham, B. T. (2018). Integrated spectroscopic analysis system with low vertical height for measuring liquid or solid assays. Sensors and Actuators, B: Chemical, 255, 935-943.

Maxwell, E. A., Phillips, H., Schaeffer, D. J., & Fan, T. M. (2018). In vitro chemosensitivity of feline injection site-associated sarcoma cell lines to carboplatin. Veterinary Surgery, 47(2), 219-226.

Zhao, J., Gao, J., Xue, W., Di, Z., Xing, H., Lu, Y., & Li, L. (2018). Upconversion Luminescence-Activated DNA Nanodevice for ATP Sensing in Living Cells. Journal of the American Chemical Society, 140(2), 578-581.

Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., ... Bashir, R. (2018). Mobile biosensing using the sensing capabilities of smartphone cameras. In 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017 (pp. 1-3). (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; Vol. 2018-January). Institute of Electrical and Electronics Engineers Inc..

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., ... Bashir, R. (2018). A microfluidic biochip platform for electrical quantification of proteins. Lab on a Chip, 18(10), 1461-1470.

Misra, C., Lin, F., & Kalsotra, A. (2018). Deregulation of RNA metabolism in microsatellite expansion diseases. In Advances in Neurobiology (pp. 213-238). (Advances in Neurobiology; Vol. 20). Springer New York LLC.

Dau, H., & Milenkovic, O. (2018). Maxminsum steiner systems for access balancing in distributed storage. SIAM Journal on Discrete Mathematics, 32(3), 1644-1671.

Peng, J., Milenkovic, O., & Ochoa-Alvarez, I. (2018). METHCOMP: A special purpose compression platform for DNA methylation data. Bioinformatics, 34(15), 2654-2656.

Hassan, U., Zhu, R., & Bashir, R. (2018). Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis. Lab on a Chip, 18(8), 1231-1240.

Cunningham, B. T., Liu, J. N., Huang, Q., Canady, T., Long, K. D., Li, N., ... Singamaneni, S. (2018). Photonic crystal resonant coupling to nanoantennas and applications for digital resolution biosensing. In Microscopy Histopathology and Analytics, MICROSCOPY 2018 (Vol. Part F89-MICROSCOPY 2018). OSA - The Optical Society.

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A., & Cunningham, B. T. (2018). Photonic resonator outcoupler microscopy (PROM) for quantitative monitoring of stem cell focal adhesion area. In Frontiers in Optics, FIO 2018 (Vol. Part F114-FIO 2018). OSA - The Optical Society.

Li, P., He, N., & Milenkovic, O. (2018). Quadratic decomposable submodular function minimization. Advances in Neural Information Processing Systems, 2018-December, 1054-1064.

Liu, J. N., Huang, Q., Liu, K. K., Singamaneni, S., & Cunningham, B. T. (2018). Resonant coupling from photonic crystal surfaces to plasmonic nanoantennas: Principles, detection instruments, and applications in digital resolution biosensing. In S. He, E-H. Lee, & S. He (Eds.), Smart Photonic and Optoelectronic Integrated Circuits XX (Vol. 10536). [105361O] SPIE.

Li, P., & Milenkovic, O. (2018). Revisiting decomposable submodular function minimization with incidence relations. Advances in Neural Information Processing Systems, 2018-December, 2237-2247.

Cunningham, B. T., Long, K. D., Woodburn, E., Wan, Y., Carlson, J., Su, P., ... Dallesasse, J. M. (2018). Smartphone spectroscopy for mobile health diagnostics with laboratory-equivalent capabilities. In M. A. Druy, S. M. Barnett, L. T. M. Profeta, R. A. Crocombe, & A. K. Azad (Eds.), Next-Generation Spectroscopic Technologies XI (Vol. 10657). [1065702] SPIE.

Li, P., & Milenkovic, O. (2018). Submodular hypergraphs: P-Laplacians, cheeger inequalities and spectral clustering. In J. Dy, & A. Krause (Eds.), 35th International Conference on Machine Learning, ICML 2018 (Vol. 7, pp. 4690-4719). International Machine Learning Society (IMLS).

Zhang, J., Xing, H., & Lu, Y. (2018). Translating molecular detections into a simple temperature test using a target-responsive smart thermometer. Chemical Science, 9(16), 3906-3910.