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Research Areas

Genomic Ecology of Global Change: Publications

Bush, D. S., Demkovich, M., Aldunate, M., Siegel, J., & Berenbaum, M. R. (2023). Kaolin as a management alternative for insecticide-resistant navel orangeworm (Lepidoptera: Pyralidae). Journal of economic entomology, 116(6), 2095-2103. Article toad194. https://doi.org/10.1093/jee/toad194

Tran, V. G., Mishra, S., Bhagwat, S. S., Shafaei, S., Shen, Y., Allen, J. L., Crosly, B. A., Tan, S. I., Fatma, Z., Rabinowitz, J. D., Guest, J. S., Singh, V., & Zhao, H. (2023). An end-to-end pipeline for succinic acid production at an industrially relevant scale using Issatchenkia orientalis. Nature communications, 14(1), Article 6152. https://doi.org/10.1038/s41467-023-41616-9

Wu, J., Ackerman, A., Gaire, R., Chowdhary, G., & Rutkoski, J. (2023). A neural network for phenotyping Fusarium-damaged kernels (FDKs) in wheat and its impact on genomic selection accuracy. Plant Phenome Journal, 6(1), Article e20065. https://doi.org/10.1002/ppj2.20065

Prochetto, S., Studer, A. J., & Reinheimer, R. (2023). De novo transcriptome assemblies of C3 and C4 non-model grass species reveal key differences in leaf development. BMC genomics, 24(1), Article 64. https://doi.org/10.1186/s12864-022-08995-7

Wu, W. Y., Liao, L. H., Lin, C. H., Johnson, R. M., & Berenbaum, M. R. (2023). Effects of pesticide-adjuvant combinations used in almond orchards on olfactory responses to social signals in honey bees (Apis mellifera). Scientific reports, 13(1), Article 15577. https://doi.org/10.1038/s41598-023-41818-7

Bao, T., Qian, Y., Xin, Y., Collins, J. J., & Lu, T. (2023). Engineering microbial division of labor for plastic upcycling. Nature communications, 14(1), Article 5712. https://doi.org/10.1038/s41467-023-40777-x

Guo, Y., Boughton, E. H., Bohlman, S., Bernacchi, C., Bohlen, P. J., Boughton, R., DeLucia, E., Fauth, J. E., Gomez-Casanovas, N., Jenkins, D. G., Lollis, G., Miller, R. S., Quintana-Ascencio, P. F., Sonnier, G., Sparks, J., Swain, H. M., & Qiu, J. (2023). Grassland intensification effects cascade to alter multifunctionality of wetlands within metaecosystems. Nature communications, 14(1), Article 8267. https://doi.org/10.1038/s41467-023-44104-2

Yun, E. J., Yu, S., Kim, D. H., Park, N. J., Liu, J. J., Jin, Y. S., & Kim, K. H. (2023). Identification of the enantiomeric nature of 2-keto-3-deoxy-galactonate in the catabolic pathway of 3,6-anhydro-l-galactose. Applied Microbiology and Biotechnology, 107(24), 7427-7438. https://doi.org/10.1007/s00253-023-12807-7

Singh, S., & Singh, V. (2023). Phosphorus flow in production of soy protein concentrate and isolate from defatted soybean flour. JAOCS, Journal of the American Oil Chemists' Society, 100(12), 985-991. https://doi.org/10.1002/aocs.12726

Lozano, A. C., Ding, H., Abe, N., & Lipka, A. E. (2023). Regularized multi-trait multi-locus linear mixed models for genome-wide association studies and genomic selection in crops. BMC bioinformatics, 24(1), Article 399. https://doi.org/10.1186/s12859-023-05519-2

Aziz, M. F., Mughal, F., & Caetano-Anollés, G. (2023). Tracing the birth of structural domains from loops during protein evolution. Scientific reports, 13(1), Article 14688. https://doi.org/10.1038/s41598-023-41556-w

Aspray, E. K., Mies, T. A., McGrath, J. A., Montes, C. M., Dalsing, B., Puthuval, K. K., Whetten, A., Herriott, J., Li, S., Bernacchi, C. J., DeLucia, E. H., Leakey, A. D. B., Long, S. P., McGrath, J. M., Miglietta, F., Ort, D. R., & Ainsworth, E. A. (2023). Two decades of fumigation data from the Soybean Free Air Concentration Enrichment facility. Scientific Data, 10(1), Article 226. https://doi.org/10.1038/s41597-023-02118-x

Li, S., Leakey, A. D. B., Moller, C. A., Montes, C. M., Sacks, E. J., Lee, D., & Ainsworth, E. A. (2023). Similar photosynthetic but different yield responses of C3 and C4 crops to elevated O3. Proceedings of the National Academy of Sciences, 120(46), Article e2313591120. https://doi.org/10.1073/pnas.2313591120

Nguyen, V., Xue, P., Li, Y., Zhao, H., & Lu, T. (2023). Controlling circuitry underlies the growth optimization of Saccharomyces cerevisiae. Metabolic Engineering, 80, 173-183. https://doi.org/10.1016/j.ymben.2023.09.013

Park, S., Park, B. R., Jeong, D., Park, J., Ko, J. K., Kim, S. J., Kim, J. S., Jin, Y. S., & Kim, S. R. (2023). Functional expression of RuBisCO reduces CO2 emission during fermentation by engineered Saccharomyces cerevisiae. Process Biochemistry, 134, 286-293. https://doi.org/10.1016/j.procbio.2023.10.013

Njuguna, J. N., Clark, L. V., Lipka, A. E., Anzoua, K. G., Bagmet, L., Chebukin, P., Dwiyanti, M. S., Dzyubenko, E., Dzyubenko, N., Ghimire, B. K., Jin, X., Johnson, D. A., Nagano, H., Peng, J., Petersen, K. K., Sabitov, A., Seong, E. S., Yamada, T., Yoo, J. H., ... Sacks, E. J. (2023). Genome-wide association and genomic prediction for yield and component traits of Miscanthus sacchariflorus. GCB Bioenergy, 15(11), 1355-1372. https://doi.org/10.1111/gcbb.13097

Della Coletta, R., Fernandes, S. B., Monnahan, P. J., Mikel, M. A., Bohn, M. O., Lipka, A. E., & Hirsch, C. N. (2023). Importance of genetic architecture in marker selection decisions for genomic prediction. Theoretical and Applied Genetics, 136(11), Article 220. https://doi.org/10.1007/s00122-023-04469-w

You, J., Li, S., Chen, N., Yang, X., Kurambhatti, C., Cai, X., & Singh, V. (2023). Phosphorus (P) recovery from corn biorefineries is promising for mitigating environmental impacts and promoting the P circular economy. Resources, Conservation and Recycling, 198, Article 107194. https://doi.org/10.1016/j.resconrec.2023.107194

Cavanagh, A. P., & Ort, D. R. (2023). Transgenic strategies to improve the thermotolerance of photosynthesis. Photosynthesis research, 158(2), 109-120. https://doi.org/10.1007/s11120-023-01024-y

Fisher, A., Tadei, R., Berenbaum, M., Nieh, J., Siviter, H., Crall, J., Glass, J. R., Muth, F., Liao, L-H., Traynor, K., Desjardins, N., Nocelli, R., Simon-Delso, N., & Harrison, J. F. (2023). Breaking the cycle: Reforming pesticide regulation to protect pollinators. BioScience, Article biad088. Advance online publication. https://doi.org/10.1093/biosci/biad088

Sun, F., & Caetano-Anollés, G. (2023). Advances in Molecular Exploration of Crop Plants under Environmental Stresses from Genetic and Genomic Perspectives. Agronomy, 13(10), Article 2653. https://doi.org/10.3390/agronomy13102653

Holland, B. L., Matthews, M. L., Bota, P., Sweetlove, L. J., Long, S. P., & diCenzo, G. C. (2023). A genome-scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost–benefit of nitrogen fixation. New Phytologist, 240(2), 744-756. https://doi.org/10.1111/nph.19203

Cho, Y. B., Stutz, S. S., Jones, S. I., Wang, Y., Pelech, E. A., & Ort, D. R. (2023). Impact of pod and seed photosynthesis on seed filling and canopy carbon gain in soybean. Plant physiology, 193(2), 966-979. Article kiad324. https://doi.org/10.1093/plphys/kiad324

Nguyen, M. T., Kim, S. A., Cheng, Y. Y., Hong, S. H., Jin, Y. S., & Han, N. S. (2023). A qPCR Method to Assay Endonuclease Activity of Cas9-sgRNA Ribonucleoprotein Complexes. Journal of Microbiology and Biotechnology, 33(9), 1228-1237. https://doi.org/10.4014/jmb.2305.05010

Rao, P., Yaroslavsky, M. A., Miller, J. C., & Schuler, M. A. (2023). Catalytic Site Constraints in the P450s Mediating Loganic Acid (7DLH) and Secologanic Acid Synthesis (SLAS) in Camptotheca. Biochemistry, 62(18), 2763-2774. https://doi.org/10.1021/acs.biochem.3c00126

Wu, G., Guan, K., Ainsworth, E. A., Martin, D. G., Kimm, H., & Yang, X. (2023). Solar-induced chlorophyll fluorescence captures the effects of elevated ozone on canopy structure and acceleration of senescence in soybean. Journal of experimental botany. Advance online publication. https://doi.org/10.1093/jxb/erad356

Murphy, M. D., & Lipka, A. E. (2023). An application of vGWAS to differences in flowering time in maize across mega-environments. Crop Science, 63(5), 2807-2817. https://doi.org/10.1002/csc2.21051

Kim, J., Cheong, Y. E., Yu, S., Yun, E. J., Jin, Y. S., & Kim, K. H. (2023). Biosynthesis of L-fucose and L-fuculose using engineered Saccharomyces cerevisiae. Process Biochemistry, 132, 152-156. https://doi.org/10.1016/j.procbio.2023.07.010

Singh, S., Bekal, S., Duan, J., & Singh, V. (2023). Characterization and Comparison of Wet Milling Fractions of Export Commodity Corn Originating from Different International Geographical Locations. Starch/Staerke, 75(9-10), Article 2200280. https://doi.org/10.1002/star.202200280

Sullivan, M., Williams, M. M., & Studer, A. J. (2023). Genetic diversity of North American popcorn germplasm and the effect of population structure on nicosulfuron response. Crop Science, 63(5), 2894-2912. https://doi.org/10.1002/csc2.21039

Głowacka, K., Kromdijk, J., Salesse-Smith, C. E., Smith, C., Driever, S. M., & Long, S. P. (2023). Is chloroplast size optimal for photosynthetic efficiency? New Phytologist, 239(6), 2197-2211. https://doi.org/10.1111/nph.19091

Wang, Y., Smith, J. A. C., Zhu, X. G., & Long, S. P. (2023). Rethinking the potential productivity of crassulacean acid metabolism by integrating metabolic dynamics with shoot architecture, using the example of Agave tequilana. New Phytologist, 239(6), 2180-2196. https://doi.org/10.1111/nph.19128

Gomez-Casanovas, N., Mwebaze, P., Khanna, M., Branham, B., Time, A., DeLucia, E. H., Bernacchi, C. J., Knapp, A. K., Hoque, M. J., Du, X., Blanc-Betes, E., Barron-Gafford, G. A., Peng, B., Guan, K., Macknick, J., Miao, R., & Miljkovic, N. (2023). Knowns, uncertainties, and challenges in agrivoltaics to sustainably intensify energy and food production. Cell Reports Physical Science, 4(8), Article 101518. https://doi.org/10.1016/j.xcrp.2023.101518

Della Coletta, R., Liese, S. E., Fernandes, S. B., Mikel, M. A., Bohn, M. O., Lipka, A. E., & Hirsch, C. N. (2023). Linking genetic and environmental factors through marker effect networks to understand trait plasticity. Genetics, 224(4), Article iyad103. https://doi.org/10.1093/genetics/iyad103

Wu, J., Bao, W., Ainsworth, E., & He, J. (2023). Personalized Federated Learning with Parameter Propagation. In KDD 2023 - Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (pp. 2594-2605). (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining). Association for Computing Machinery. https://doi.org/10.1145/3580305.3599464

Ort, D. R., & Lunn, J. E. (2023). Society for Experimental Biology Centenary (1923-2023). Journal of experimental botany, 74(14), 3877-3878. https://doi.org/10.1093/jxb/erad206

Guan, K., Jin, Z., Peng, B., Tang, J., DeLucia, E. H., West, P. C., Jiang, C., Wang, S., Kim, T., Zhou, W., Griffis, T., Liu, L., Yang, W. H., Qin, Z., Yang, Q., Margenot, A., Stuchiner, E. R., Kumar, V., Bernacchi, C., ... Yang, S. J. (2023). A scalable framework for quantifying field-level agricultural carbon outcomes. Earth-Science Reviews, 243, Article 104462. https://doi.org/10.1016/j.earscirev.2023.104462

Zhang, L., Zheng, H., Li, W., Olesen, J. E., Harrison, M. T., Bai, Z., Zou, J., Zheng, A., Bernacchi, C., Xu, X., Peng, B., Liu, K., Chen, F., & Yin, X. (2023). Genetic progress battles climate variability: drivers of soybean yield gains in China from 2006 to 2020. Agronomy for Sustainable Development, 43(4), Article 50. https://doi.org/10.1007/s13593-023-00905-9

Pagliaro, Z., Burke, J., Morrissey, E., Ridgeway, J., Singh, V., Altpeter, F., & Brzostek, E. R. (2023). Lipid-enhanced Oilcane does not impact soil carbon dynamics compared with wild-type Sugarcane. GCB Bioenergy, 15(8), 969-978. https://doi.org/10.1111/gcbb.13074

You, J. S., Kim, Y., Lee, S., Bashir, R., & Chen, J. (2023). RhoA/ROCK signalling activated by ARHGEF3 promotes muscle weakness via autophagy in dystrophic mdx mice. Journal of Cachexia, Sarcopenia and Muscle, 14(4), 1880-1893. https://doi.org/10.1002/jcsm.13278

You, J. S., Barai, P., & Chen, J. (2023). Sex differences in skeletal muscle size, function, and myosin heavy chain isoform expression during post-injury regeneration in mice. Physiological Reports, 11(16), Article e15791. https://doi.org/10.14814/phy2.15791

Berenbaum, M. R. (2023). “Debugging” insect-related conspiracy theories. Annals of the Entomological Society of America, Article saad018. Advance online publication. https://doi.org/10.1093/aesa/saad018

Wu, G., Guan, K., Jiang, C., Kimm, H., Miao, G., Yang, X., Bernacchi, C. J., Sun, X., Suyker, A. E., & Moore, C. E. (2023). Can upscaling ground nadir SIF to eddy covariance footprint improve the relationship between SIF and GPP in croplands? Agricultural and Forest Meteorology, 338, Article 109532. https://doi.org/10.1016/j.agrformet.2023.109532

Basso, T. P., Procópio, D. P., Petrin, T. H. C., Giacon, T. G., Jin, Y. S., Basso, T. O., & Basso, L. C. (2023). Engineering xylose fermentation in an industrial yeast: continuous cultivation as a tool for selecting improved strains. Letters in Applied Microbiology, 76(7). https://doi.org/10.1093/lambio/ovad077

Caetano-Anollés, G. (2023). Agency in evolution of biomolecular communication. Annals of the New York Academy of Sciences, 1525(1), 88-103. https://doi.org/10.1111/nyas.15005

Blanc-Betes, E., Gomez-Casanovas, N., Yang, W. H., Chandrasoma, J., Clark, T. J., De Lucia, E. H., Hyde, C. A., Kent, A. D., Pett-Ridge, J., Rabinowitz, J., Raglin, S. S., Schwender, J., Shen, Y., Van Allen, R., & von Haden, A. C. (2023). Accelerating the development of a sustainable bioenergy portfolio through stable isotopes. GCB Bioenergy, 15(7), 840-866. https://doi.org/10.1111/gcbb.13056

Parsons, B. W., Utterback, P. L., Juneja, A., Singh, V., Parsons, C. M., & Emmert, J. L. (2023). Determination of TMEn, standardized amino acid digestibility, phosphorus digestibility, and phosphorus bioavailability in conventional and reduced phosphorus distillers dried grains with solubles. Poultry science, 102(7), Article 102743. https://doi.org/10.1016/j.psj.2023.102743

Lee, M. S., Boyd, R. A., Boateng, K. A., & Ort, D. R. (2023). Exploring 3D leaf anatomical traits for C4 photosynthesis: chloroplast and plasmodesmata pit field size in maize and sugarcane. New Phytologist, 239(2), 506-517. https://doi.org/10.1111/nph.18956

Nguyen, P. Q., Huang, X., Collins, D. S., Collins, J. J., & Lu, T. (2023). Harnessing synthetic biology to enhance ocean health. Trends in Biotechnology, 41(7), 860-874. https://doi.org/10.1016/j.tibtech.2022.12.015

Cheng, M. H., Singh, S., Carr Clennon, A. N., Dien, B. S., & Singh, V. (2023). Production of Designer Xylose-Acetic Acid Enriched Hydrolysate from Bioenergy Sorghum, Oilcane, and Energycane Bagasses. Bioresource Technology, 380, Article 129104. https://doi.org/10.1016/j.biortech.2023.129104

Lagos-Kutz, D. M., Pawlowski, M. L., Han, J., Clough, S. J., & Hartman, G. L. (2023). Reduction in productivity of soybean plants infested with Neohyadatothrips variabilis (Thysanoptera: Thripidae) with and without soybean vein necrosis virus. Phytoparasitica, 51(3), 437-445. https://doi.org/10.1007/s12600-023-01070-1

Seyfried, G. S., Midgley, M. G., Phillips, R. P., & Yang, W. H. (2023). Refining the role of nitrogen mineralization in mycorrhizal nutrient syndromes. Biogeochemistry, 164(3), 473–487. https://doi.org/10.1007/s10533-023-01038-7

Bernacchi, C. J., Ruiz-Vera, U. M., Siebers, M. H., DeLucia, N. J., & Ort, D. R. (2023). Short- and long-term warming events on photosynthetic physiology, growth, and yields of field grown crops. Biochemical Journal, 480(13), 999-1014. https://doi.org/10.1042/BCJ20220433

Li, S., Cai, X., Niroula, S., Wallington, K., Gramig, B. M., Cusick, R. D., Singh, V., McIsaac, G., Oh, S., Kurambhatti, C., Emaminejad, S. A., & John, S. (2023). Integrated Agricultural Practices and Engineering Technologies Enhance Synergies of Food-Energy-Water Systems in Corn Belt Watersheds. Environmental Science and Technology, 57(25), 9194-9203. https://doi.org/10.1021/acs.est.3c02055

Wu, J., He, J., & Ainsworth, E. (2023). Non-IID Transfer Learning on Graphs. In B. Williams, Y. Chen, & J. Neville (Eds.), AAAI-23 Technical Tracks 9 (pp. 10342-10350). (Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023; Vol. 37). American Association for Artificial Intelligence (AAAI) Press.

Paudel, S., Gomez-Casanovas, N., Boughton, E. H., Chamberlain, S. D., Wagle, P., Peterson, B. L., Bajgain, R., Starks, P. J., Basara, J., Bernacchi, C. J., DeLucia, E. H., Goodman, L. E., Gowda, P. H., Reuter, R., Sparks, J. P., Swain, H. M., Xiao, X., & Steiner, J. L. (2023). Intensification differentially affects the delivery of multiple ecosystem services in subtropical and temperate grasslands. Agriculture, Ecosystems and Environment, 348, Article 108398. https://doi.org/10.1016/j.agee.2023.108398

Kim, J., Jin, Y. S., & Kim, K. H. (2023). L-Fucose is involved in human–gut microbiome interactions. Applied Microbiology and Biotechnology, 107(12), 3869-3875. https://doi.org/10.1007/s00253-023-12527-y

Lee, S. H., Yun, E. J., Han, N. R., Jung, I., Pelton, J. G., Lee, J-E., Kang, N. J., Jin, Y-S., & Kim, K. H. (2023). Production of Ethyl-agarobioside, a Novel Skin Moisturizer, by Mimicking the Alcoholysis from the Japanese Sake-Brewing Process. Marine Drugs, 21(6), Article 341. https://doi.org/10.3390/md21060341

Calera, E. S., Oliveira, G. C. D., Araujo, G. L., Filho, J. I. F., Toschi, L., Hernandes, A. C., Velasquez, A. E. B., Gasparino, M. V., Chowdhary, G., Higuti, V. A. H., & Becker, M. (2023). Under-Canopy Navigation for an Agricultural Rover Based on Image Data. Journal of Intelligent and Robotic Systems: Theory and Applications, 108(2), Article 29. https://doi.org/10.1007/s10846-023-01849-8

Seyfried, G. S., Corrales, A., Kent, A. D., Dalling, J. W., & Yang, W. (2023). Watershed-scale Variation in Potential Fungal Community Contributions to Ectomycorrhizal Biogeochemical Syndromes. Ecosystems, 26(4), 724-739. https://doi.org/10.1007/s10021-022-00788-z

Tamang, B. G., Zhang, Y., Zambrano, M. A., & Ainsworth, E. A. (2023). Anatomical determinants of gas exchange and hydraulics vary with leaf shape in soybean. Annals of botany, 131(6), 909-920. https://doi.org/10.1093/aob/mcac118

Zegers, F. M., Sun, R., Chowdhary, G., & Dixon, W. E. (2023). Distributed State Estimation With Deep Neural Networks for Uncertain Nonlinear Systems Under Event-Triggered Communication. IEEE Transactions on Automatic Control, 68(5), 3107-3114. https://doi.org/10.1109/TAC.2022.3217022

Njuguna, J. N., Clark, L. V., Anzoua, K. G., Bagmet, L., Chebukin, P., Dwiyanti, M. S., Dzyubenko, E., Dzyubenko, N., Ghimire, B. K., Jin, X., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Petersen, K. K., Sabitov, A., Seong, E. S., Yamada, T., ... Sacks, E. J. (2023). Biomass yield in a genetically diverse Miscanthus sacchariflorus germplasm panel phenotyped at five locations in Asia, North America, and Europe. GCB Bioenergy, 15(5), 642-662. https://doi.org/10.1111/gcbb.13043

Miller, J. C., Lee, J. H. Z., Mclean, M. A., Chao, R. R., Stone, I. S. J., Pukala, T. L., Bruning, J. B., De Voss, J. J., Schuler, M. A., Sligar, S. G., & Bell, S. G. (2023). Engineering C-C Bond Cleavage Activity into a P450 Monooxygenase Enzyme. Journal of the American Chemical Society, 145(16), 9207-9222. https://doi.org/10.1021/jacs.3c01456

Maitra, S., & Singh, V. (2023). Application of Time-Domain 1H NMR for Investigating Dynamics of Vegetative Lipids in Bioenergy Crops at Different Developmental Stages. Industrial Biotechnology, 19(2), 86-93. https://doi.org/10.1089/ind.2022.0039

Chen, J. (2023). Arginyl-tRNA synthetase in inflammation. Nature Cell Biology, 25(4), 520-521. https://doi.org/10.1038/s41556-023-01090-3

Kong, W., Qian, Y., Stewart, P. S., & Lu, T. (2023). De novo engineering of a bacterial lifestyle program. Nature chemical biology, 19(4), 488-497. https://doi.org/10.1038/s41589-022-01194-1

Lane, S., Turner, T. L., & Jin, Y. S. (2023). Glucose assimilation rate determines the partition of flux at pyruvate between lactic acid and ethanol in Saccharomyces cerevisiae. Biotechnology Journal, 18(4), Article 2200535. https://doi.org/10.1002/biot.202200535

Tsvetkov, N., Bahia, S., Calla, B., Berenbaum, M. R., & Zayed, A. (2023). Genetics of tolerance in honeybees to the neonicotinoid clothianidin. iScience, 26(3), Article 106084. https://doi.org/10.1016/j.isci.2023.106084

Burroughs, C. H., Montes, C. M., Moller, C. A., Mitchell, N. G., Michael, A. M., Peng, B., Kimm, H., Pederson, T. L., Lipka, A. E., Bernacchi, C. J., Guan, K., & Ainsworth, E. A. (2023). Reductions in Leaf Area Index, Pod Production, Seed Size and Harvest Index Drive Yield Loss to High Temperatures in Soybean. Journal of experimental botany, 74(5), 1629–1641. Article erac503. https://doi.org/10.1093/jxb/erac503

Berenbaum, M. R. (2023). On peer review-then, now, and soon to be? Proceedings of the National Academy of Sciences of the United States of America, 120(11), Article e2302593120. https://doi.org/10.1073/pnas.2302593120

Li, Y., Kontos, G. A., Cabrera, D. V., Avila, N. M., Parkinson, T. W., Viswanathan, M. B., Singh, V., Altpeter, F., Labatut, R. A., & Guest, J. S. (2023). Design of a High-Rate Wastewater Treatment Process for Energy and Water Recovery at Biorefineries. ACS Sustainable Chemistry and Engineering, 11(9), 3861-3872. https://doi.org/10.1021/acssuschemeng.2c07139

Singh, R., Lessard, P., Michael Raab, R., & Singh, V. (2023). Effect of phytase corn addition on ethanol yield and distillers' dried grains with soluble profile in corn dry-grind process. Cereal Chemistry, 100(2), 284-288. https://doi.org/10.1002/cche.10610

Wei, W., Wu, X., Garcia, A., McCoppin, N., Viana, J. P. G., Murad, P. S., Walker, D. R., Hartman, G. L., Domier, L. L., Hudson, M. E., & Clough, S. J. (2023). An NBS-LRR protein in the Rpp1 locus negates the dominance of Rpp1-mediated resistance against Phakopsora pachyrhizi in soybean. Plant Journal, 113(5), 915-933. https://doi.org/10.1111/tpj.16038

Jia, Y., Maitra, S., & Singh, V. (2023). Chemical-free production of multiple high-value bioproducts from metabolically engineered transgenic sugarcane ‘oilcane’ bagasse and their recovery using nanofiltration. Bioresource Technology, 371, Article 128630. https://doi.org/10.1016/j.biortech.2023.128630

Sinha, E., Bond‐Lamberty, B., Calvin, K. V., Drewniak, B. A., Bisht, G., Bernacchi, C., Blakely, B. J., & Moore, C. E. (2023). The Impact of Crop Rotation and Spatially Varying Crop Parameters in the E3SM Land Model (ELMv2). Journal of Geophysical Research: Biogeosciences, 128(3), Article e2022JG007187. https://doi.org/10.1029/2022JG007187

Zhang, Y., Blahut-Beatty, L., Zheng, S., Clough, S. J., & Simmonds, D. H. (2023). The Role of a Soybean 14-3-3 Gene (Glyma05g29080) on White Mold Resistance and Nodulation Investigations Using CRISPR-Cas9 Editing and RNA Silencing. Molecular Plant-Microbe Interactions, 36(3), 159-164. https://doi.org/10.1094/MPMI-07-22-0157-R

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Sun, R., Greene, M. L., Le, D. M., Bell, Z. I., Chowdhary, G., & Dixon, W. E. (2022). Lyapunov-Based Real-Time and Iterative Adjustment of Deep Neural Networks. IEEE Control Systems Letters, 6, 193-198. [9337905]. https://doi.org/10.1109/LCSYS.2021.3055454

Mercado, M. A., & Studer, A. J. (2022). Meeting in the Middle: Lessons and Opportunities from Studying C3-C4Intermediates. Annual Review of Plant Biology, 73, 43-65. https://doi.org/10.1146/annurev-arplant-102720-114201

Choi, J. W., Chowdhary, G., Singer, A. C., Vishnu, H., Weiss, A., Wornell, G. W., & Deane, G. (2022). Online Segmented Recursive Least-Squares for Multipath Doppler Tracking. In 2022 6th Underwater Communications and Networking Conference, UComms 2022 (2022 6th Underwater Communications and Networking Conference, UComms 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/UComms56954.2022.9905690

Hetti-Arachchilage, M., Challa, G. S., & Marshall-Colón, A. (2022). Rewiring Network Plasticity to Improve Crops. In Plant Breeding Reviews (pp. 143-183). (Plant Breeding Reviews; Vol. 45). John Wiley & Sons, Ltd.. https://doi.org/10.1002/9781119828235.ch3

Berenbaum, M. R. (2022). Sew-Sew Jokes. American Entomologist, 68(2), 12-15. https://doi.org/10.1093/ae/tmac025

Montag, W., Liao, L. H., & Berenbaum, M. R. (Accepted/In press). Sexually dimorphic responses to monofloral honeys in the small hive beetle, Aethina tumida Murray (Coleoptera: Nitidulidae). Journal of Apicultural Research. https://doi.org/10.1080/00218839.2022.2147712

Matthews, M. L., Marshall-Colón, A., McGrath, J. M., Lochocki, E. B., & Long, S. P. (2022). Soybean-BioCro: A semi-mechanistic model of soybean growth. In Silico Plants, 4(1), [diab032]. https://doi.org/10.1093/insilicoplants/diab032

Moore, C. E., Gibson, C. D., Miao, G., Dracup, E. C., Gomez-Casanovas, N., Masters, M. D., Miller, J., C Von Haden, A., Meyers, T., Delucia, E. H., & Bernacchi, C. J. (2022). Substantial carbon loss respired from a corn-soybean agroecosystem highlights the importance of careful management as we adapt to changing climate. Environmental Research Letters, 17(5), [054029]. https://doi.org/10.1088/1748-9326/ac661a

Berenbaum, M. R. (2022). Terms of Art and Terms of Arthropods. American Entomologist, 68(3), 12-15. https://doi.org/10.1093/ae/tmac051

Cheng, M. H., Maitra, S., Clennon, A. N. C., Appell, M., Dien, B. S., & Singh, V. (Accepted/In press). The effects of sequential hydrothermal-mechanical refining pretreatment on cellulose structure changes and sugar recoveries. Biomass Conversion and Biorefinery. https://doi.org/10.1007/s13399-022-03359-3

Caetano-Anollés, K., Hernandez, N., Mughal, F., Tomaszewski, T., & Caetano-Anollés, G. (2022). The seasonal behaviour of COVID-19 and its galectin-like culprit of the viral spike. In C. S. Pavia, & V. Gurtler (Eds.), Covid-19: Biomedical Perspectives: Biomedical Perspectives (pp. 27-81). (Methods in Microbiology; Vol. 50). Academic Press Inc.. https://doi.org/10.1016/bs.mim.2021.10.002

Seyfried, G. S., Corrales, A., Kent, A. D., Dalling, J. W., & Yang, W. (Accepted/In press). Watershed-scale Variation in Potential Fungal Community Contributions to Ectomycorrhizal Biogeochemical Syndromes. Ecosystems. https://doi.org/10.1007/s10021-022-00788-z

Xue, X., Wang, J., Shukla, D., Cheung, L. S., & Chen, L. Q. (2022). When SWEETs Turn Tweens: Updates and Perspectives. Annual Review of Plant Biology, 73, 379-403. https://doi.org/10.1146/annurev-arplant-070621-093907