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Center for Genomic Diagnostics

To view the full list of publications across IGB's research portfolio, please visit our Illinois Experts page

2023

Boudreau, M. W., Tonogai, E. J., Schane, C. P., Xi, M. X., Fischer, J. H., Vijayakumar, J., Ji, Y., Tarasow, T. M., Fan, T. M., Hergenrother, P. J., & Dudek, A. Z. (2023). The combination of PAC-1 and entrectinib for the treatment of metastatic uveal melanoma. Melanoma research, 33(6), 514-524. https://doi.org/10.1097/CMR.0000000000000927

Chen, S., & Bashir, R. (2023). Advances in field-effect biosensors towards point-of-use. Measurement Science and Technology, 34(49), Article 492002. https://doi.org/10.1088/1361-6528/acf3f0

Tran, V. G., Mishra, S., Bhagwat, S. S., Shafaei, S., Shen, Y., Allen, J. L., Crosly, B. A., Tan, S. I., Fatma, Z., Rabinowitz, J. D., Guest, J. S., Singh, V., & Zhao, H. (2023). An end-to-end pipeline for succinic acid production at an industrially relevant scale using Issatchenkia orientalis. Nature communications, 14(1), Article 6152. https://doi.org/10.1038/s41467-023-41616-9

Yue, Q., Meng, J., Qiu, Y., Yin, M., Zhang, L., Zhou, W., An, Z., Liu, Z., Yuan, Q., Sun, W., Li, C., Zhao, H., Molnár, I., Xu, Y., & Shi, S. (2023). A polycistronic system for multiplexed and precalibrated expression of multigene pathways in fungi. Nature communications, 14(1), Article 4267. https://doi.org/10.1038/s41467-023-40027-0

Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (2023). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences, 15(3), 545-561. https://doi.org/10.1007/s12561-021-09310-w

Ren, H., Dommaraju, S. R., Huang, C., Cui, H., Pan, Y., Nesic, M., Zhu, L., Sarlah, D., Mitchell, D. A., & Zhao, H. (2023). Genome mining unveils a class of ribosomal peptides with two amino termini. Nature communications, 14(1), Article 1624. https://doi.org/10.1038/s41467-023-37287-1

Zhao, S., Hartanto, J., Joseph, R., Wu, C. H., Zhao, Y., & Chen, Y. S. (2023). Hybrid photoacoustic and fast super-resolution ultrasound imaging. Nature communications, 14(1), Article 2191. https://doi.org/10.1038/s41467-023-37680-w

Santaliz-Casiano, A., Mehta, D., Danciu, O. C., Patel, H., Banks, L., Zaidi, A., Buckley, J., Rauscher, G. H., Schulte, L., Weller, L. R., Taiym, D., Liko-Hazizi, E., Pulliam, N., Friedewald, S. M., Khan, S., Kim, J. J., Gradishar, W., Hegerty, S., Frasor, J., ... Madak-Erdogan, Z. (2023). Identification of metabolic pathways contributing to ER+ breast cancer disparities using a machine-learning pipeline. Scientific reports, 13(1), Article 12136. https://doi.org/10.1038/s41598-023-39215-1

Guo, X., Bai, Z., Zhang, Y., Zhao, H., & Shi, S. (2023). Mining and application of constitutive promoters from Rhodosporidium toruloides. AMB Express, 13(1), Article 17. https://doi.org/10.1186/s13568-023-01522-1

Zhang, M., Ehmann, M. E., Matukumalli, S., Boob, A. G., Gilbert, D. M., & Zhao, H. (2023). SHIELD: a platform for high-throughput screening of barrier-type DNA elements in human cells. Nature communications, 14(1), Article 5616. https://doi.org/10.1038/s41467-023-41468-3

Zhang, M., Zhu, Z., Xun, G., & Zhao, H. (2023). To cut or not to cut: Next-generation genome editors for precision genome engineering. Current Opinion in Biomedical Engineering, 28, Article 100489. https://doi.org/10.1016/j.cobme.2023.100489

Maji, A., Soutar, C. P., Zhang, J., Lewandowska, A., Uno, B. E., Yan, S., Shelke, Y., Murhade, G., Nimerovsky, E., Borcik, C. G., Arango, A. S., Lange, J. D., Marin-Toledo, J. P., Lyu, Y., Bailey, K. L., Roady, P. J., Holler, J. T., Khandelwal, A., SantaMaria, A. M., ... Burke, M. D. (2023). Tuning sterol extraction kinetics yields a renal-sparing polyene antifungal. Nature, 623(7989), 1079-1085. https://doi.org/10.1038/s41586-023-06710-4

Liu, X., Milenkovic, O., & Moustakides, G. V. (2023). Query-based selection of optimal candidates under the Mallows model. Theoretical Computer Science, 979, Article 114206. https://doi.org/10.1016/j.tcs.2023.114206

Piersma, S. J., Bangru, S., Yoon, J., Liu, T. W., Yang, L., Hsieh, C. S., Plougastel-Douglas, B., Kalsotra, A., & Yokoyama, W. M. (2023). NK cell expansion requires HuR and mediates control of solid tumors and long-term virus infection. The Journal of experimental medicine, 220(11). https://doi.org/10.1084/jem.20231154

Gapinske, L., Clark, L., Caro-Rivera, L. M., & Bashir, R. (2023). Cryopreservation Alters Tissue Structure and Improves Differentiation of Engineered Skeletal Muscle. Tissue Engineering - Part A, 29(21-22), 557-568. https://doi.org/10.1089/ten.tea.2023.0075

Barya, P., Xiong, Y., Shepherd, S., Gupta, R., Akin, L. D., Tibbs, J., Lee, H., Singamaneni, S., & Cunningham, B. T. (2023). Photonic-Plasmonic Coupling Enhanced Fluorescence Enabling Digital-Resolution Ultrasensitive Protein Detection. Small, 19(44), Article 2207239. https://doi.org/10.1002/smll.202207239

Nguyen, V., Xue, P., Li, Y., Zhao, H., & Lu, T. (2023). Controlling circuitry underlies the growth optimization of Saccharomyces cerevisiae. Metabolic Engineering, 80, 173-183. https://doi.org/10.1016/j.ymben.2023.09.013

Zhang, M., Singh, N., Ehmann, M. E., Zheng, L., & Zhao, H. (2023). Incorporation of noncanonical base Z yields modified mRNA with minimal immunogenicity and improved translational capacity in mammalian cells. iScience, 26(10), Article 107739. https://doi.org/10.1016/j.isci.2023.107739

Asserghine, A., Baby, A., Putnam, S. T., Qian, P., Gao, E., Zhao, H., & Rodríguez-López, J. (2023). In situ detection of reactive oxygen species spontaneously generated on lead acid battery anodes: a pathway for degradation and self-discharge at open circuit. Chemical Science, 14(43), 12292-12298. https://doi.org/10.1039/D3SC04736A

Orr, J. S., Zen, E., Wang, X., & Rao, C. V. (2023). Emulsion-based evolution of Escherichia coli for higher growth yield on D-xylose identifies central role of cyclic AMP. Systems Microbiology and Biomanufacturing, 3(4), 730-738. https://doi.org/10.1007/s43393-022-00136-1

Lee, W., & Smith, A. M. (2023). Magic reactions transform nanoclusters. Nature Synthesis, 2(10), 904-905. https://doi.org/10.1038/s44160-023-00346-y

Martínez–Sánchez, C., Bassegoda, O., Deng, H., Almodóvar, X., Ibarzabal, A., de Hollanda, A., Martínez García de la Torre, RA. A., Blaya, D., Ariño, S., Jiménez-Esquivel, N., Aguilar-Bravo, B., Vallverdú, J., Montironi, C., Osorio-Conles, O., Fundora, Y., Sánchez Moreno, F. J., Gómez-Valadés, A. G., Aguilar-Corominas, L., Soria, A., ... Coll, M. (2023). Therapeutic targeting of adipose tissue macrophages ameliorates liver fibrosis in non-alcoholic fatty liver disease. JHEP Reports, 5(10), Article 100830. https://doi.org/10.1016/j.jhepr.2023.100830

Ouyang, L., Wang, N., Irudayaraj, J., & Majima, T. (2023). Virus on surfaces: Chemical mechanism, influence factors, disinfection strategies, and implications for virus repelling surface design. Advances in Colloid and Interface Science, 320, Article 103006. https://doi.org/10.1016/j.cis.2023.103006

Rodriguez, A., Gandavadi, D., Mathivanan, J., Song, T., Madhanagopal, B. R., Talbot, H., Sheng, J., Wang, X., & Chandrasekaran, A. R. (2023). Self-Assembly of DNA Nanostructures in Different Cations. Small, 19(39), Article 2300040. https://doi.org/10.1002/smll.202300040

Chauhan, N., Xiong, Y., Ren, S., Dwivedy, A., Magazine, N., Zhou, L., Jin, X., Zhang, T., Cunningham, B. T., Yao, S., Huang, W., & Wang, X. (2023). Net-Shaped DNA Nanostructures Designed for Rapid/Sensitive Detection and Potential Inhibition of the SARS-CoV-2 Virus. Journal of the American Chemical Society, 145(37), 20214-20228. https://doi.org/10.1021/jacs.2c04835

Yuan, Y., Shi, C., & Zhao, H. (2023). Machine Learning-Enabled Genome Mining and Bioactivity Prediction of Natural Products. ACS synthetic biology, 12(9), 2650-2662. https://doi.org/10.1021/acssynbio.3c00234

Gapinske, M., Winter, J., Swami, D., Gapinske, L., Woods, W. S., Shirguppe, S., Miskalis, A., Busza, A., Joulani, D., Kao, C. J., Kostan, K., Bigot, A., Bashir, R., & Perez-Pinera, P. (2023). Targeting Duchenne muscular dystrophy by skipping DMD exon 45 with base editors. Molecular Therapy - Nucleic Acids, 33, 572-586. https://doi.org/10.1016/j.omtn.2023.07.029

Lee, G., Jeong, W. H., Kim, B., Jeon, S., Smith, A. M., Seo, J., Suzuki, K., Kim, J. Y., Lee, H., Choi, H., Chung, D. S., Choi, J., Choi, H., & Lim, S. J. (2023). Design and Synthesis of CdHgSe/HgS/CdZnS Core/Multi-Shell Quantum Dots Exhibiting High-Quantum-Yield Tissue-Penetrating Shortwave Infrared Luminescence. Small, 19(36), Article 2301161. https://doi.org/10.1002/smll.202301161

Sarker, K., Zhu, R., Holscher, H. D., & Zhai, C. X. (2023). Augmenting nutritional metabolomics with a genome-scale metabolic model for assessment of diet intake. In ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics Article 4 (ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics). Association for Computing Machinery. https://doi.org/10.1145/3584371.3612958

Gordon, D. L., Foreman, J. H., Connolly, S. L., Schnelle, A. N., Fan, T. M., & Barger, A. M. (2023). Acute phase protein concentrations following serial procaine penicillin G injections in horses. Equine veterinary journal, 55(5), 916-922. https://doi.org/10.1111/evj.13886

Yu, T., Boob, A. G., Singh, N., Su, Y., & Zhao, H. (2023). In vitro continuous protein evolution empowered by machine learning and automation. Cell Systems, 14(8), 633-644. https://doi.org/10.1016/j.cels.2023.04.006

Jeong, Y., Vyas, K., & Irudayaraj, J. (2023). Toxicity of per- and polyfluoroalkyl substances to microorganisms in confined hydrogel structures. Journal of Hazardous Materials, 456, Article 131672. https://doi.org/10.1016/j.jhazmat.2023.131672

Pattabiraman, S., Gabrys, R., & Milenkovic, O. (2023). Coding for Polymer-Based Data Storage. IEEE Transactions on Information Theory, 69(8), 4812-4836. https://doi.org/10.1109/TIT.2023.3267620

Zhang, Z., Feng, J., Yang, C., Cui, H., Harrison, W., Zhong, D., Wang, B., & Zhao, H. (2023). Photoenzymatic enantioselective intermolecular radical hydroamination. Nature Catalysis, 6(8), 687-694. https://doi.org/10.1038/s41929-023-00994-5

You, J. S., Kim, Y., Lee, S., Bashir, R., & Chen, J. (2023). RhoA/ROCK signalling activated by ARHGEF3 promotes muscle weakness via autophagy in dystrophic mdx mice. Journal of Cachexia, Sarcopenia and Muscle, 14(4), 1880-1893. https://doi.org/10.1002/jcsm.13278

Ren, W., Messerschmidt, V., Tsipursky, M., & Irudayaraj, J. (2023). Oxygen Nanobubbles-Embedded Hydrogel as Wound Dressing to Accelerate Healing. ACS Applied Nano Materials, 6(14), 13116-13126. https://doi.org/10.1021/acsanm.3c01812

Han, X., Ju, L. S., & Irudayaraj, J. (2023). Oxygenated Wound Dressings for Hypoxia Mitigation and Enhanced Wound Healing. Molecular pharmaceutics, 20(7), 3338-3355. https://doi.org/10.1021/acs.molpharmaceut.3c00352

Fatma, Z., Tan, S. I., Boob, A. G., & Zhao, H. (2023). A landing pad system for multicopy gene integration in Issatchenkia orientalis. Metabolic Engineering, 78, 200-208. https://doi.org/10.1016/j.ymben.2023.06.010

Peh, G., Gunawan, G. A., Tay, T., Tiong, E., Tan, L. L., Jiang, S., Goh, Y. L., Ye, S., Wong, J., Brown, C. J., Zhao, H., Ang, E. L., Wong, F. T., & Lim, Y. H. (2023). Further Characterization of Fungal Halogenase RadH and Its Homologs. Biomolecules, 13(7), Article 1081. https://doi.org/10.3390/biom13071081

Bashir, R., Ganguli, A., Kosari, F., & Wampfler, E. (2023). Spatial Molecular Analysis Of Tissue. (U.S. Patent No. 11667970).

Stinson, J. A., Sheen, A., Momin, N., Hampel, J., Bernstein, R., Kamerer, R., Fadl-Alla, B., Samuelson, J., Fink, E., Fan, T. M., & Wittrup, K. D. (2023). Collagen-Anchored Interleukin-2 and Interleukin-12 Safely Reprogram the Tumor Microenvironment in Canine Soft-Tissue Sarcomas. Clinical Cancer Research, 29(11), 2110-2122. https://doi.org/10.1158/1078-0432.CCR-23-0006

Lee, H., Wang, W., Chauhan, N., Xiong, Y., Magazine, N., Valdescruz, O., Kim, D. Y., Qiu, T., Huang, W., Wang, X., & Cunningham, B. T. (2023). Rapid detection of intact SARS-CoV-2 using designer DNA Nets and a pocket-size smartphone-linked fluorimeter. Biosensors and Bioelectronics, 229, Article 115228. https://doi.org/10.1016/j.bios.2023.115228

Valera, E., Kindratenko, V., Jankelow, A. M., Heredia, J., Kim, A. Y., Cowell, T. W., Chen, C. L., White, K., Han, H. S., & Bashir, R. (2023). Electrochemical point-of-care devices for the diagnosis of sepsis. Current Opinion in Electrochemistry, 39, Article 101300. https://doi.org/10.1016/j.coelec.2023.101300

Derham, J. M., & Kalsotra, A. (2023). The discovery, function, and regulation of epithelial splicing regulatory proteins (ESRP) 1 and 2. Biochemical Society transactions, 51(3), 1097-1109. https://doi.org/10.1042/BST20221124

Ranoa, D. R. E., Sharma, P., Schane, C. P., Lewis, A. N., Valdez, E., Marada, V. V. V. R., Hager, M. V., Montgomery, W., Wolf, S. P., Schreiber, K., Schreiber, H., Bailey, K., Fan, T. M., Hergenrother, P. J., Roy, E. J., & Kranz, D. M. (2023). Single CAR-T cell treatment controls disseminated ovarian cancer in a syngeneic mouse model. Journal for ImmunoTherapy of Cancer, 11(5), Article e006509. https://doi.org/10.1136/jitc-2022-006509

Cunningham, B. T., Bashir, R., Ganguli, A., Damhorst, G. L., Brooks, I., Yu, H., Chen, W., Sun, F., Ornob, A., Nash, D., & Hirschberg, D. L. (2023). System For Rapid, Portable, And Multiplexed Detection And Identification Of Pathogen Specific Nucleic Acid Sequences. (U.S. Patent No. 11654429).

Jiang, G., Huang, C., Harrison, W., Li, H., Zhou, M., & Zhao, H. (2023). Ene Reductase Enabled Intramolecular β-C−H Functionalization of Substituted Cyclohexanones for Efficient Synthesis of Bridged Bicyclic Nitrogen Scaffolds. Angewandte Chemie - International Edition, 62(22), Article e202302125. https://doi.org/10.1002/anie.202302125

Meng, J., Qiu, Y., Zhang, Y., Zhao, H., & Shi, S. (2023). CMI: CRISPR/Cas9 Based Efficient Multiplexed Integration in Saccharomyces cerevisiae. ACS synthetic biology, 12(5), 1408-1414. https://doi.org/10.1021/acssynbio.2c00591

Xiong, X., Tasan, I., Yang, C., Zhang, M., Hernandez Gonzalez, G. A., Liu, S., Chaturvedi, P., Belmont, A. S., & Zhao, H. (2023). Imaging Method Using CRISPR/dCas9 and Engineered gRNA Scaffolds Can Perturb Replication Timing at the HSPA1 Locus. ACS synthetic biology, 12(5), 1424-1436. https://doi.org/10.1021/acssynbio.2c00433

Liu, L., Tibbs, J., Li, N., Bacon, A., Shepherd, S., Lee, H., Chauhan, N., Demirci, U., Wang, X., & Cunningham, B. T. (2023). A photonic resonator interferometric scattering microscope for label-free detection of nanometer-scale objects with digital precision in point-of-use environments. Biosensors and Bioelectronics, 228, Article 115197. https://doi.org/10.1016/j.bios.2023.115197

Mogol, A. N., Zuo, Q., Yoo, J. Y., Kaminsky, A. Z., Imir, O. B., Landesman, Y., Walker, C. J., & Madak erdogan, Z. (2023). NAD + Metabolism Generates a Metabolic Vulnerability in Endocrine-Resistant Metastatic Breast Tumors in Females. Endocrinology, Article bqad073. Advance online publication. https://doi.org/10.1210/endocr/bqad073

Volk, M. J., Tran, V. G., Tan, S. I., Mishra, S., Fatma, Z., Boob, A., Li, H., Xue, P., Martin, T. A., & Zhao, H. (2023). Metabolic Engineering: Methodologies and Applications. Chemical reviews, 123(9), 5521-5570. https://doi.org/10.1021/acs.chemrev.2c00403

Calderón-Olvera, R. M., Arroyo, E., Jankelow, A. M., Bashir, R., Valera, E., Ocaña, M., & Becerro, A. I. (2023). Persistent Luminescence Zn2GeO4:Mn2+ Nanoparticles Functionalized with Polyacrylic Acid: One-Pot Synthesis and Biosensing Applications. ACS Applied Materials and Interfaces, 15(17), 20613-20624. https://doi.org/10.1021/acsami.2c21735

Kuo, C. W., & Smith, A. M. (2023). Digital and Absolute Assays for Low Abundance Molecular Biomarkers. Accounts of chemical research, 56(9), 1031-1042. https://doi.org/10.1021/acs.accounts.3c00030

Pan, C., Chien, E., & Milenkovic, O. (2023). Unlearning Graph Classifiers with Limited Data Resources. In ACM Web Conference 2023 - Proceedings of the World Wide Web Conference, WWW 2023 (pp. 716-726). (ACM Web Conference 2023 - Proceedings of the World Wide Web Conference, WWW 2023). Association for Computing Machinery. https://doi.org/10.1145/3543507.3583547

Wang, X., Shepherd, S., Li, N., Che, C., Song, T., Xiong, Y., Palm, I. R., Zhao, B., Kohli, M., Demirci, U., Lu, Y., & Cunningham, B. T. (2023). A Target Recycling Amplification Process for the Digital Detection of Exosomal MicroRNAs through Photonic Resonator Absorption Microscopy. Angewandte Chemie - International Edition, 62(16), Article e202217932. https://doi.org/10.1002/anie.202217932

Smith, L., & Smith, A. M. (2023). Ultrasensitive Micro Rna Quantification. (U.S. Patent No. 11618919).

Liu, W., Zhang, X., Wen, Y., Anastasio, M. A., & Irudayaraj, J. (2023). A machine learning approach to elucidating PFOS-induced alterations of repressive epigenetic marks in kidney cancer cells with single-cell imaging. Environmental Advances, 11, Article 100344. https://doi.org/10.1016/j.envadv.2023.100344

Pan, C., Chien, E., Tabaghi, P., Peng, J., & Milenkovic, O. (2023). Provably accurate and scalable linear classifiers in hyperbolic spaces. Knowledge and Information Systems, 65(4), 1817-1850. https://doi.org/10.1007/s10115-022-01820-3

Yu, T., Cui, H., Li, J. C., Luo, Y., Jiang, G., & Zhao, H. (2023). Enzyme function prediction using contrastive learning. Science, 379(6639), 1358-1363. https://doi.org/10.1126/science.adf2465

Rashid, F., Liu, W., Wang, Q., Ji, B., Irudayaraj, J., & Wang, N. (2023). Mechanomemory in protein diffusivity of chromatin and nucleoplasm after force cessation. Proceedings of the National Academy of Sciences, 120(13), Article e2221432120. https://doi.org/10.1073/pnas.2221432120

Chakraborty, R., Xiong, M., Athreya, N., Tabatabaei, S. K., Milenkovic, O., & Leburton, J. P. (2023). Solid-State MoS2 Nanopore Membranes for Discriminating among the Lengths of RNA Tails on a Double-Stranded DNA: A New Simulation-Based Differentiating Algorithm. ACS Applied Nano Materials, 6(6), 4651-4660. https://doi.org/10.1021/acsanm.3c00129

Danciu, O. C., Holdhoff, M., Peterson, R. A., Fischer, J. H., Liu, L. C., Wang, H., Venepalli, N. K., Chowdhery, R., Nicholas, M. K., Russell, M. J., Fan, T. M., Hergenrother, P. J., Tarasow, T. M., & Dudek, A. Z. (2023). Phase I study of procaspase-activating compound-1 (PAC-1) in the treatment of advanced malignancies. British Journal of Cancer, 128(5), 783-792. https://doi.org/10.1038/s41416-022-02089-7

Chembazhi, U. V., Tung, W. S., Hwang, H., Wang, Y., Lalwani, A., Nguyen, K. L., Bangru, S., Yee, D., Chin, K., Yang, J., Kalsotra, A., & Mei, W. (2023). PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression. Nucleic acids research, 51(5), 2397-2414. Article gkad042. https://doi.org/10.1093/nar/gkad042

Xiong, Y., Shepherd, S., Tibbs, J., Bacon, A., Liu, W., Akin, L. D., Ayupova, T., Bhaskar, S., & Cunningham, B. T. (2023). Photonic Crystal Enhanced Fluorescence: A Review on Design Strategies and Applications. Micromachines, 14(3), Article 668. https://doi.org/10.3390/mi14030668

Jeong, Y., & Irudayaraj, J. (2023). Hierarchical encapsulation of bacteria in functional hydrogel beads for inter- and intra- species communication. Acta Biomaterialia, 158, 203-215. https://doi.org/10.1016/j.actbio.2023.01.003

Hu, M., Dinh, H. V., Shen, Y., Suthers, P. F., Foster, C. J., Call, C. M., Ye, X., Pratas, J., Fatma, Z., Zhao, H., Rabinowitz, J. D., & Maranas, C. D. (2023). Comparative study of two Saccharomyces cerevisiae strains with kinetic models at genome-scale. Metabolic Engineering, 76, 1-17. https://doi.org/10.1016/j.ymben.2023.01.001

Rashid, F., Dubinkina, V., Ahmad, S., Maslov, S., & Irudayaraj, J. M. K. (2023). Gut Microbiome-Host Metabolome Homeostasis upon Exposure to PFOS and GenX in Male Mice. Toxics, 11(3), Article 281. https://doi.org/10.3390/toxics11030281

Zhou, S., Fatma, Z., Xue, P., Mishra, S., Cao, M., Zhao, H., & Sweedler, J. V. (2023). Mass Spectrometry-Based High-Throughput Quantification of Bioproducts in Liquid Culture. Analytical Chemistry, 95(8), 4067-4076. https://doi.org/10.1021/acs.analchem.2c04845

Harley, B. A. C., Lu, Y., Cunningham, B. T., Zhuo, Y., Choi, J. S., Marin, T., & Singamaneni, S. (2023). Photonic Resonator Absorption Microscopy (pram) For Digital Resolution Biomolecular Diagnostics. (U.S. Patent No. 11591640).

Bacon, A., Wang, W., Lee, H., Umrao, S., Sinawang, P. D., Akin, D., Khemtonglang, K., Tan, A., Hirshfield, S., Demirci, U., Wang, X., & Cunningham, B. T. (2023). Review of HIV Self Testing Technologies and Promising Approaches for the Next Generation. Biosensors, 13(2), Article 298. https://doi.org/10.3390/bios13020298

Arif, W., Mathur, B., Saikali, M. F., Chembazhi, U. V., Toohill, K., Song, Y. J., Hao, Q., Karimi, S., Blue, S. M., Yee, B. A., Van Nostrand, E. L., Bangru, S., Guzman, G., Yeo, G. W., Prasanth, K. V., Anakk, S., Cummins, C. L., & Kalsotra, A. (2023). Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications, 14(1), Article 551. https://doi.org/10.1038/s41467-023-35932-3

Kwon, J. Y., Moskwa, N., Kang, W., Fan, T. M., & Lee, C. (2023). Canine as a Comparative and Translational Model for Human Mammary Tumor. Journal of Breast Cancer, 26(1), 1-13. https://doi.org/10.4048/jbc.2023.26.e4

Messerschmidt, V., Ren, W., Tsipursky, M., & Irudayaraj, J. (2023). Characterization of Oxygen Nanobubbles and In Vitro Evaluation of Retinal Cells in Hypoxia. Translational Vision Science and Technology, 12(2), Article 16. https://doi.org/10.1167/tvst.12.2.16

Tu, Z., Irudayaraj, J., & Lee, Y. (2023). Characterizing Spray-Dried Powders through NIR Spectroscopy: Effect of Two Preparation Strategies for Calibration Samples and Comparison of Two Types of NIR Spectrometers. Foods, 12(3), Article 467. https://doi.org/10.3390/foods12030467

Yu, T., Boob, A. G., Volk, M. J., Liu, X., Cui, H., & Zhao, H. (2023). Machine learning-enabled retrobiosynthesis of molecules. Nature Catalysis, 6(2), 137-151. https://doi.org/10.1038/s41929-022-00909-w

Kim, Y., Yang, Y., Zhang, X., Li, Z., Vázquez-Guardado, A., Park, I., Wang, J., Efimov, A. I., Dou, Z., Wang, Y., Park, J., Luan, H., Ni, X., Kim, Y. S., Baek, J., Park, J. J., Xie, Z., Zhao, H., Gazzola, M., ... Bashir, R. (2023). Remote control of muscle-driven miniature robots with battery-free wireless optoelectronics. Science Robotics, 8(74), eadd1053. https://doi.org/10.1126/scirobotics.add1053

Mestre, R., Fuentes, J., Lefaix, L., Wang, J., Guix, M., Murillo, G., Bashir, R., & Sánchez, S. (2023). Improved Performance of Biohybrid Muscle-Based Bio-Bots Doped with Piezoelectric Boron Nitride Nanotubes. Advanced Materials Technologies, 8(2), Article 2200505. https://doi.org/10.1002/admt.202200505

Huang, C., Cui, H., Ren, H., & Zhao, H. (2023). Investigation of the Biosynthetic Mechanism of Bipentaromycin Featuring an Unprecedented Cyclic Head-to-Tail Dimeric Scaffold. JACS Au, 3(1), 195-203. https://doi.org/10.1021/jacsau.2c00594

Cheong, C. B., Peh, G. R., Wei, Y., Rehka, T., Ang, E. L., Zhao, H., Zhang, C., & Lim, Y. H. (2023). A Spirobicyclo[3.1.0]Terpene from the Investigation of Sesquiterpene Synthases from Lactarius deliciosus. ACS chemical biology, 18(1), 134-140. https://doi.org/10.1021/acschembio.2c00760

Zhao, S., Lee, L., Zhao, Y., Liang, N-C., & Chen, Y. S. (2023). Photoacoustic signal enhancement in dual-contrast gastrin-releasing peptide receptor-targeted nanobubbles. Frontiers in Bioengineering and Biotechnology, 11, Article 1102651. https://doi.org/10.3389/fbioe.2023.1102651

Shinn, L. M., Mansharamani, A., Baer, D. J., Novotny, J. A., Charron, C. S., Khan, N. A., Zhu, R., & Holscher, H. D. (2023). Fecal Metabolites as Biomarkers for Predicting Food Intake by Healthy Adults. The Journal of nutrition, 152(12), 2956-2965. Article nxac195. https://doi.org/10.1093/jn/nxac195

Singh, R., Bhagwat, S. S., Viswanathan, M. B., Cortés‐Peña, Y. R., Eilts, K. K., Mcdonough, G., Cao, M., Guest, J. S., Zhao, H., & Singh, V. (2023). Adsorptive separation and recovery of triacetic acid lactone from fermentation broth. Biofuels, Bioproducts and Biorefining, 17(1), 109-120. https://doi.org/10.1002/bbb.2427

Gabrys, R., Pattabiraman, S., & Milenkovic, O. (2023). Reconstruction of Sets of Strings From Prefix/Suffix Compositions. IEEE Transactions on Communications, 71(1), 3-12. https://doi.org/10.1109/TCOMM.2022.3222341

Lee, J. W., Bhagwat, S. S., Kuanyshev, N., Cho, Y. B., Sun, L., Lee, Y. G., Cortés-Peña, Y. R., Li, Y., Rao, C. V., Guest, J. S., & Jin, Y. S. (2023). Rewiring yeast metabolism for producing 2,3-butanediol and two downstream applications: Techno-economic analysis and life cycle assessment of methyl ethyl ketone (MEK) and agricultural biostimulant production. Chemical Engineering Journal, 451, Article 138886. https://doi.org/10.1016/j.cej.2022.138886

Rana, V., Chien, E., Peng, J., & Milenkovic, O. (2023). Small-Sample Estimation of the Mutational Support and Distribution of SARS-CoV-2. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20(1), 668-682. https://doi.org/10.1109/TCBB.2022.3165395

Jeong, Y., Kong, W., Lu, T., & Irudayaraj, J. (2023). Soft hydrogel-shell confinement systems as bacteria-based bioactuators and biosensors. Biosensors and Bioelectronics, 219, Article 114809. https://doi.org/10.1016/j.bios.2022.114809

Mishra, S., Wang, Z., Volk, M. J., & Zhao, H. (2023). Design and application of a kinetic model of lipid metabolism in Saccharomyces cerevisiae. Metabolic Engineering, 75, 12-18. https://doi.org/10.1016/j.ymben.2022.11.003

Zhang, X., Flaws, J. A., Spinella, M. J., & Irudayaraj, J. (2023). The Relationship between Typical Environmental Endocrine Disruptors and Kidney Disease. Toxics, 11(1), Article 32. https://doi.org/10.3390/toxics11010032

Lim, J., Zhou, S., Baek, J., Kim, A. Y., Valera, E., Sweedler, J., & Bashir, R. (in press). A Blood Drying Process for DNA Amplification. Small. https://doi.org/10.1002/smll.202307959

Liu, X., Milenkovic, O., & Moustakides, G. V. (2023). A Combinatorial Proof for the Dowry Problem. In 2023 IEEE Information Theory Workshop, ITW 2023 (pp. 538-543). (2023 IEEE Information Theory Workshop, ITW 2023). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ITW55543.2023.10161638

Ye, X., Wang, H., Yu, J., Chen, Y. S., & Zhao, Y. (2023). Automatically Reconfigurable Metasurface for Free-Positioning Wireless Power Transfer. In 2023 IEEE Wireless Power Technology Conference and Expo, WPTCE 2023 - Proceedings (2023 IEEE Wireless Power Technology Conference and Expo, WPTCE 2023 - Proceedings). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/WPTCE56855.2023.10216114

Lopes, D. D., Dien, B. S., Hector, R. E., Singh, V., Thompson, S. R., Slininger, P. J., Boundy-Mills, K., Jagtap, S. S., & Rao, C. V. (2023). Determining mating type and ploidy in Rhodotorula toruloides and its effect on growth on sugars from lignocellulosic biomass. Journal of Industrial Microbiology and Biotechnology, 50(1), Article kuad040. https://doi.org/10.1093/jimb/kuad040

Shinn, L. M., Mansharamani, A., Baer, D. J., Novotny, J. A., Charron, C. S., Khan, N. A., Zhu, R., & Holscher, H. D. (in press). Fecal Metagenomics to Identify Biomarkers of Food Intake in Healthy Adults: Findings from Randomized, Controlled, Nutrition Trials. Journal of Nutrition. https://doi.org/10.1016/j.tjnut.2023.11.001

Li, Y. H., Gabrys, R., Sima, J., Shomorony, I., & Milenkovic, O. (2023). Finding a Burst of Positives via Nonadaptive Semiquantitative Group Testing. In 2023 IEEE International Symposium on Information Theory, ISIT 2023 (pp. 1848-1853). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2023-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT54713.2023.10206886

Kim, H. W., Kim, N. K., Phillips, A. P. R., Parker, D. A., Liu, P., Whitaker, R. J., Rao, C. V., & Mackie, R. I. (2023). Genomic insight and physiological characterization of thermoacidophilic Alicyclobacillus isolated from Yellowstone National Park. Frontiers in Microbiology, 14, Article 1232587. https://doi.org/10.3389/fmicb.2023.1232587

Wang, H., Ye, X., Yu, J., Chen, Y. S., & Zhao, Y. (2023). Magnetic Nearfield Reshaping Metasurfaces. International Conference on Metamaterials, Photonic Crystals and Plasmonics, 355-356.

Zuo, Q., Park, N. H., Lee, J. K., Santaliz-Casiano, A., & Madak-Erdogan, Z. (in press). Navigating nonalcoholic fatty liver disease (NAFLD): Exploring the roles of estrogens, pharmacological and medical interventions, and life style. Steroids, Article 109330. https://doi.org/10.1016/j.steroids.2023.109330

Jagtap, S. S., Liu, J-J., Walukiewicz, H. E., Pangilinan, J., Lipzen, A., Ahrendt, S., Koriabine, M., Cobaugh, K., Salamov, A., Yoshinaga, Y., Ng, V., Daum, C., Grigoriev, I. V., Slininger, P. J., Dien, B. S., Jin, Y-S., & Rao, C. V. (2023). Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements, 12(11). https://doi.org/10.1128/MRA.00426-23

Sima, J., Li, Y. H., Shomorony, I., & Milenkovic, O. (2023). On Constant-Weight Binary B2-Sequences. In 2023 IEEE International Symposium on Information Theory, ISIT 2023 (pp. 886-891). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2023-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT54713.2023.10206632

Moustakides, G. V., Liu, X., & Milenkovic, O. (in press). Optimal stopping methodology for the secretary problem with random queries. Journal of Applied Probability. https://doi.org/10.1017/jpr.2023.61

Sima, J., Pan, C., & Milenkovic, O. (2023). Perturbation-Resilient Sets for Dynamic Service Balancing. In 2023 IEEE International Symposium on Information Theory, ISIT 2023 (pp. 2278-2283). (IEEE International Symposium on Information Theory - Proceedings; Vol. 2023-June). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ISIT54713.2023.10206839

Holdhoff, M., Nicholas, M. K., Peterson, R. A., Maraka, S., Liu, L. C., Fischer, J. H., Wefel, J. S., Fan, T. M., Vannorsdall, T., Russell, M., Iacoboni, M., Tarasow, T. M., Hergenrother, P. J., Dudek, A. Z., & Danciu, O. C. (2023). Phase I dose escalation study of procaspase-activating compound-1 (PAC-1) in combination with temozolomide in patients with recurrent high-grade astrocytomas. Neuro-Oncology Advances, 5(1), Article vdad087. https://doi.org/10.1093/noajnl/vdad087

Chien, E., Zhang, J., Hsieh, C. J., Jiang, J. Y., Chang, W. C., Milenkovic, O., & Yu, H. F. (2023). PINA: Leveraging Side Information in eXtreme Multi-label Classification via Predicted Instance Neighborhood Aggregation. Proceedings of Machine Learning Research, 202, 5616-5630.

Yu, J., Wang, H., Ye, X., Chen, Y. S., & Zhao, Y. (2023). Qi Standard Compatible Metasurface for Multi-Device Wireless Power Transfer with Tunable Power Division. In 2023 IEEE Wireless Power Technology Conference and Expo, WPTCE 2023 - Proceedings (2023 IEEE Wireless Power Technology Conference and Expo, WPTCE 2023 - Proceedings). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/WPTCE56855.2023.10215927

Lee, H., Wang, W., Chauhan, N., Xiong, Y., Magazine, N., Valdescruz, O., Kim, D. Y., Qiu, T., Huang, W., Wang, X., & Cunningham, B. T. (2023). Rapid, sensitive detection of intact SARS-CoV-2 using DNA nets and a smartphone-linked fluorimeter. In G. L. Cote (Ed.), Optical Diagnostics and Sensing XXIII: Toward Point-of-Care Diagnostics Article 123870B (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 12387). SPIE. https://doi.org/10.1117/12.2650836

Shah, M. M., Ahmad, K., Boota, S., Jensen, T., La Frano, M. R., & Irudayaraj, J. (2023). Sensor technologies for the detection and monitoring of endocrine-disrupting chemicals. Frontiers in Bioengineering and Biotechnology, 11, Article 1141523. https://doi.org/10.3389/fbioe.2023.1141523

Wang, W., Lee, H., Jankelow, A. M., Hoang, T. H., Bacon, A., Sun, F., Chae, S., Kindratenko, V., Koprowski, K., Stavins, R. A., Ceriani, D., Engelder, Z., King, W. P., Do, M. N., Bashir, R., Valera, E., & Cunningham, B. T. (2023). Smartphone Clip-On Instrument and Microfluidic Processor for Rapid Sample-to-Answer Detection of Zika Virus in Whole Blood Using Spatial RT-LAMP. In G. L. Cote (Ed.), Optical Diagnostics and Sensing XXIII: Toward Point-of-Care Diagnostics Article 123870D (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 12387). SPIE. https://doi.org/10.1117/12.2649267

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Cunningham, B. T. (2023). Ultrasensitive and ultra selective liquid biopsy: Nanophotonics-driven digital resolution biomolecule sensing combined with target molecule recycling. In R. R. Alfano, & A. B. Seddon (Eds.), Optical Biopsy XXI: Toward Real-Time Spectroscopic Imaging and Diagnosis Article 1237304 (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 12373). SPIE. https://doi.org/10.1117/12.2659440

 

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Cabrera, A., Edelstein, H. I., Glykofrydis, F., Love, K. S., Palacios, S., Tycko, J., Zhang, M., Lensch, S., Shields, C. E., Livingston, M., Weiss, R., Zhao, H., Haynes, K. A., Morsut, L., Chen, Y. Y., Khalil, A. S., Wong, W. W., Collins, J. J., Rosser, S. J., ... Deans, T. L. (2022). The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems, 13(12), 950-973. https://doi.org/10.1016/j.cels.2022.11.005

Liu, Y., Wei, Y., Teh, T. M., Liu, D., Zhou, Y., Zhao, S., Ang, E. L., Zhao, H., & Zhang, Y. (2022). Identification and Characterization of the Biosynthetic Pathway of the Sulfonolipid Capnine. Biochemistry, 61(24), 2861-2869. https://doi.org/10.1021/acs.biochem.2c00102

Burke, M. D., Fan, T. M., Hergenrother, P. J., Brooke, C. B., Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., & Wang, L. (2022). Saliva-based Molecular Testing For SARS-CoV-2. (U.S. Patent No. 11530457).

Shi, W., Bell, S., Iyer, H., Brenden, C. K., Zhang, Y., Kim, S., Park, I., Bashir, R., Sweedler, J., & Vlasov, Y. (2022). Integrated silicon microfluidic chip for picoliter-scale analyte segmentation and microscale printing for mass spectrometry imaging. Lab on a chip, 23(1), 72-80. https://doi.org/10.1039/d2lc00688j

Sullivan, K. M., Ko, E., Kim, E. M., Ballance, W. C., Ito, J. D., Chalifoux, M., Kim, Y. J., Bashir, R., & Kong, H. (2022). Extracellular Microenvironmental Control for Organoid Assembly. Tissue Engineering - Part B: Reviews, 28(6), 1209-1222. https://doi.org/10.1089/ten.teb.2021.0186

Ayikpoe, R. S., Shi, C., Battiste, A. J., Eslami, S. M., Ramesh, S., Simon, M. A., Bothwell, I. R., Lee, H., Rice, A. J., Ren, H., Tian, Q., Harris, L. A., Sarksian, R., Zhu, L., Frerk, A. M., Precord, T. W., van der Donk, W. A., Mitchell, D. A., & Zhao, H. (2022). A scalable platform to discover antimicrobials of ribosomal origin. Nature communications, 13(1), [6135]. https://doi.org/10.1038/s41467-022-33890-w

Peng, Q., Huang, Z., Sun, K., Liu, Y., Yoon, C. W., Harrison, R. E. S., Schmitt, D. L., Zhu, L., Wu, Y., Tasan, I., Zhao, H., Zhang, J., Zhong, S., Chien, S., & Wang, Y. (2022). Engineering inducible biomolecular assemblies for genome imaging and manipulation in living cells. Nature communications, 13(1), [7933]. https://doi.org/10.1038/s41467-022-35504-x

Cable, J., Arlotta, P., Parker, K. K., Hughes, A. J., Goodwin, K., Mummery, C. L., Kamm, R. D., Engle, S. J., Tagle, D. A., Boj, S. F., Stanton, A. E., Morishita, Y., Kemp, M. L., Norfleet, D. A., May, E. E., Lu, A., Bashir, R., Feinberg, A. W., Hull, S. M., ... Mulero-Russe, A. (2022). Engineering multicellular living systems—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1518(1), 183-195. https://doi.org/10.1111/nyas.14896

Berry, M. R., Fadl-Alla, B. A., Samuelson, J., Rosol, T. J., & Fan, T. M. (2022). Investigating PSMA differential expression in canine uroepithelial carcinomas to aid disease-based stratification and guide therapeutic selection. BMC Veterinary Research, 18(1), [441]. https://doi.org/10.1186/s12917-022-03544-6

Schultz, J. C., Mishra, S., Gaither, E., Mejia, A., Dinh, H., Maranas, C., & Zhao, H. (2022). Metabolic engineering of Rhodotorula toruloides IFO0880 improves C16 and C18 fatty alcohol production from synthetic media. Microbial cell factories, 21(1), [26]. https://doi.org/10.1186/s12934-022-01750-3

Ranoa, D. R. E., Holland, R. L., Alnaji, F. G., Green, K. J., Wang, L., Fredrickson, R. L., Wang, T., Wong, G. N., Uelmen, J., Maslov, S., Weiner, Z. J., Tkachenko, A. V., Zhang, H., Liu, Z., Ibrahim, A., Patel, S. J., Paul, J. M., Vance, N. P., Gulick, J. G., ... Burke, M. D. (2022). Mitigation of SARS-CoV-2 transmission at a large public university. Nature communications, 13(1), [3207]. https://doi.org/10.1038/s41467-022-30833-3

Enghiad, B., Xue, P., Singh, N., Boob, A. G., Shi, C., Petrov, V. A., Liu, R., Peri, S. S., Lane, S. T., Gaither, E. D., & Zhao, H. (2022). PlasmidMaker is a versatile, automated, and high throughput end-to-end platform for plasmid construction. Nature communications, 13(1), [2697]. https://doi.org/10.1038/s41467-022-30355-y

Pan, C., Tabatabaei, S. K., Tabatabaei Yazdi, S. M. H., Hernandez, A. G., Schroeder, C. M., & Milenkovic, O. (2022). Rewritable two-dimensional DNA-based data storage with machine learning reconstruction. Nature communications, 13(1), [2984]. https://doi.org/10.1038/s41467-022-30140-x

Khandelwal, A., Athreya, N., Tu, M. Q., Janavicius, L. L., Yang, Z., Milenkovic, O., Leburton, J. P., Schroeder, C. M., & Li, X. (2022). Self-assembled microtubular electrodes for on-chip low-voltage electrophoretic manipulation of charged particles and macromolecules. Microsystems and Nanoengineering, 8(1), [27]. https://doi.org/10.1038/s41378-022-00354-6

Peng, J., Serrano, G., Traniello, I. M., Calleja-Cervantes, M. E., Chembazhi, U. V., Bangru, S., Ezponda, T., Rodriguez-Madoz, J. R., Kalsotra, A., Prosper, F., Ochoa, I., & Hernaez, M. (2022). SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes. Communications biology, 5(1), [351]. https://doi.org/10.1038/s42003-022-03319-7

Han, X., Jeong, Y., & Irudayaraj, J. (2022). Nanocatalase-Based Oxygen-Generating Nanocarriers for Active Oxygen Delivery to Relieve Hypoxia in Pancreatic Cancer. ACS Applied Nano Materials, 5(11), 17248-17257. https://doi.org/10.1021/acsanm.2c04241

Zhao, H. (2022). The Ever-Expanding Boundaries of Synthetic Biology. ACS synthetic biology, 11(11), 3550. https://doi.org/10.1021/acssynbio.2c00582

Wen, Y., Liu, W., David, B., Ren, W., & Irudayaraj, J. (2022). Multifunctional Oxygenated Particles for Targeted Cancer Drug Delivery and Evaluation with Darkfield Hyperspectral Imaging. ACS Omega, 7(45), 41275-41283. https://doi.org/10.1021/acsomega.2c04953

Zhao, F., Wei, Y., Wang, X., Zhou, Y., Tong, Y., Ang, E. L., Liu, S., Zhao, H., & Zhang, Y. (2022). Enzymatic Synthesis of the Unnatural Nucleotide 2’-Deoxyisoguanosine 5’-Monophosphate. ChemBioChem, 23(21), [e202200295]. https://doi.org/10.1002/cbic.202200295

Erdogan, Z. M., & Hammes, S. R. (2022). Expanding Our Scope and Our Identity. Journal of the Endocrine Society, 6(11), [bvac149]. https://doi.org/10.1210/jendso/bvac149

Hsu, W., Hippe, D. S., Nakhaei, N., Wang, P. C., Zhu, B., Siu, N., Ahsen, M. E., Lotter, W., Sorensen, A. G., Naeim, A., Buist, D. S. M., Schaffter, T., Guinney, J., Elmore, J. G., & Lee, C. I. (2022). External Validation of an Ensemble Model for Automated Mammography Interpretation by Artificial Intelligence. JAMA network open, 5(11), e2242343. https://doi.org/10.1001/jamanetworkopen.2022.42343

Nelczyk, A. T., Ma, L., Gupta, A. D., Gamage, H. E. V., McHenry, M. T., Henn, M. A., Kadiri, M., Wang, Y., Krawczynska, N., Bendre, S., He, S., Shahoei, S. H., Madak-Erdogan, Z., Hsiao, S. H., Saleh, T., Carpenter, V., Gewirtz, D. A., Spinella, M. J., & Nelson, E. R. (2022). The nuclear receptor TLX (NR2E1) inhibits growth and progression of triple- negative breast cancer. Biochimica et Biophysica Acta - Molecular Basis of Disease, 1868(11), [166515]. https://doi.org/10.1016/j.bbadis.2022.166515

Sonam, S., Bangru, S., Perry, K. J., Chembazhi, U. V., Kalsotra, A., & Henry, J. J. (2022). Cellular and molecular profiles of larval and adult Xenopus corneal epithelia resolved at the single-cell level. Developmental Biology, 491, 13-30. https://doi.org/10.1016/j.ydbio.2022.08.007

Qiao, W., Xu, S., Liu, Z., Fu, X., Zhao, H., & Shi, S. (2022). Challenges and opportunities in C1-based biomanufacturing. Bioresource Technology, 364, [128095]. https://doi.org/10.1016/j.biortech.2022.128095

Maino Vieytes, C. A., Zhu, R., Gany, F., Burton-Obanla, A., & Arthur, A. E. (2022). Empirical Dietary Patterns Associated with Food Insecurity in U.S. Cancer Survivors: NHANES 1999–2018. International journal of environmental research and public health, 19(21), [14062]. https://doi.org/10.3390/ijerph192114062

Audu, C. O., Melvin, W. J., Joshi, A. D., Wolf, S. J., Moon, J. Y., Davis, F. M., Barrett, E. C., Mangum, K. D., Deng, H., Xing, X., Wasikowski, R., Tsoi, L. C., Sharma, S. B., Bauer, T. M., Shadiow, J., Corriere, M. A., Obi, A. T., Kunkel, S. L., Levi, B., ... Gallagher, K. A. (2022). Macrophage-specific inhibition of the histone demethylase JMJD3 decreases STING and pathologic inflammation in diabetic wound repair. Cellular and Molecular Immunology, 19(11), 1251-1262. https://doi.org/10.1038/s41423-022-00919-5

Zhou, H., Zhu, R., Ung, A., & Schatz, B. (2022). Population analysis of mortality risk: Predictive models from passive monitors using motion sensors for 100,000 UK Biobank participants. PLOS Digital Health, 1(10), [e0000045]. https://doi.org/10.1371/journal.pdig.0000045

Zhang, Z., & Zhao, H. (2022). Tunnel engineering enables multifaceted improvements in halogenase. Chem Catalysis, 2(10), 2432-2434. https://doi.org/10.1016/j.checat.2022.09.010

Gordon, D. L., Foreman, J. H., Connolly, S. L., Schnelle, A. N., Fan, T. M., & Barger, A. M. (2022). Acute phase protein concentrations following serial procaine penicillin G injections in horses. Equine veterinary journal. https://doi.org/10.1111/evj.13886

Ganguli, A., Lim, J., Mostafa, A., Saavedra, C., Rayabharam, A., Aluru, N. R., Wester, M., White, K. C., Kumar, J., McGuffin, R., Frederick, A., Valera, E., & Bashir, R. (2022). A culture-free biphasic approach for sensitive and rapid detection of pathogens in dried whole-blood matrix. Proceedings of the National Academy of Sciences of the United States of America, 119(40), e2209607119. [e2209607119]. https://doi.org/10.1073/pnas.2209607119

LeBlanc, A. K., Mazcko, C. N., Fan, T. M., Vail, D. M., Flesner, B. K., Bryan, J. N., Li, S., Wang, F., Harris, S., Vargas, J. D., Govindharajulu, J. P., Jaganathan, S., Tomaino, F., Srivastava, A. K., Chou, T. F., Stott, G. M., Covey, J. M., Mroczkowski, B., & Doroshow, J. H. (2022). Comparative Oncology Assessment of a Novel Inhibitor of Valosin-Containing Protein in Tumor-Bearing Dogs. Molecular Cancer Therapeutics, 21(10), 1510-1523. https://doi.org/10.1158/1535-7163.MCT-22-0167

Fan, T. M., Garrett, L. D., Selting, K. A., & Constable, P. D. (2022). Novel immunotherapy offers promising weapon against canine melanoma. American journal of veterinary research, 83(10). https://doi.org/10.2460/ajvr.22.08.0133

Lee, Y. G., Kim, C., Kuanyshev, N., Kang, N. K., Fatma, Z., Wu, Z. Y., Cheng, M. H., Singh, V., Yoshikuni, Y., Zhao, H., & Jin, Y. S. (2022). Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates. Journal of Agricultural and Food Chemistry, 70(38), 12085-12094. https://doi.org/10.1021/acs.jafc.2c04251

Zheng, L., Wen, Y., Ren, W., Duan, H., Lin, J., & Irudayaraj, J. (2022). Hyperspectral dark-field microscopy for pathogen detection based on spectral angle mapping. Sensors and Actuators B: Chemical, 367, [132042]. https://doi.org/10.1016/j.snb.2022.132042

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Han, Z., Vaidya, R. M., Arogundade, O. H., Ma, L., Zahid, M. U., Sarkar, S., Kuo, C. W., Selvin, P. R., & Smith, A. M. (Accepted/In press). Structural Design of Multidentate Copolymers as Compact Quantum Dot Coatings for Live-Cell Single-Particle Imaging. Chemistry of Materials. https://doi.org/10.1021/acs.chemmater.2c00498

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