Skip to main content

Illinois IGB

Veronika Dubinkina

Predicting the response of fungal genes using FUN-PROSE

November 20, 2023

Signals from the environment set off a cascade of changes that affect different genes in different ways. Therefore, traditionally it has been difficult to study how such signals influence an organism. In a new study, researchers have developed a machine learning approach called FUN-PROSE to predict how genes react to different environmental conditions.


November 20, 2023


Related Articles

Predicting microbial interactions in the human gut

March 1, 2021

The human gut consists of a complex community of microbes that consume and secrete hundreds of small molecules—a phenomenon called cross-feeding. However, it is challenging to study these processes experimentally. A new study, published in Nature Communications, uses models to predict cross-feeding interactions between microbial species in the gut. Predictions from such computational methods could eventually help doctors get a more complete understanding of gut health.


March 1, 2021


Related Articles

Mathematical models provide snapshot of human gut microbial community

December 9, 2019

Microbial communities can be found everywhere – from lakes to the soil on the ground, they are omnipresent yet invisible to the naked eye. Within those environments there exist dynamic communities which fluctuate in response to environmental changes. One such example is the human gut microbiome, which is comprised of microbes that influence the overall landscape of the gut.


December 9, 2019


Related Articles

Researchers use economic concept to understand microbial communities

February 20, 2018

A popular economic concept is helping IGB researchers understand how microbial communities operate.

Microbial communities are in our bodies, in the soil, in forests and oceans, and more. They’re made up of microorganisms that interact with each other in various ways, and these interactions can affect the surrounding environment.

Researchers like Sergei Maslov, a Bliss Faculty Scholar and professor of bioengineering in the Biocomplexity theme, want to understand microbial communities so they can learn how to manipulate them.


February 20, 2018


Related Articles

Subscribe to Veronika Dubinkina