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Guo, B., Holscher, H. D., Auvil, L. S., Welge, M. E., Bushell, C. B., Novotny, J. A., Baer, D. J., Burd, N. A., Khan, N. A., & Zhu, R. (2023). Estimating Heterogeneous Treatment Effect on Multivariate Responses Using Random Forests. Statistics in Biosciences, 15(3), 545-561. https://doi.org/10.1007/s12561-021-09310-w

Santaliz-Casiano, A., Mehta, D., Danciu, O. C., Patel, H., Banks, L., Zaidi, A., Buckley, J., Rauscher, G. H., Schulte, L., Weller, L. R., Taiym, D., Liko-Hazizi, E., Pulliam, N., Friedewald, S. M., Khan, S., Kim, J. J., Gradishar, W., Hegerty, S., Frasor, J., ... Madak-Erdogan, Z. (2023). Identification of metabolic pathways contributing to ER⁺ breast cancer disparities using a machine-learning pipeline. Scientific reports, 13(1), Article 12136. https://doi.org/10.1038/s41598-023-39215-1

Park, J., Sorrells, J. E., Chaney, E. J., Abdelrahman, A. M., Yonkus, J. A., Leiting, J. L., Nelson, H., Harrington, J. J., Aksamitiene, E., Marjanovic, M., Groves, P. D., Bushell, C., Truty, M. J., & Boppart, S. A. (2023). In vivo label-free optical signatures of chemotherapy response in human pancreatic ductal adenocarcinoma patient-derived xenografts. Communications biology, 6(1), Article 980. https://doi.org/10.1038/s42003-023-05368-y

Wroblewski, T. H., Witt, K. E., Lee, S., Malhi, R. S., Peede, D., Huerta-Sánchez, E., Villanea, F. A., & Claw, K. G. (2023). Pharmacogenetic variation in Neanderthals and Denisovans and implications for human health and response to medications. Genome biology and evolution, 15(12), Article evad222. https://doi.org/10.1093/gbe/evad222

Anthony, D., Gunter, C. A., He, W., Khanafer, M., Landau, S., Mangar, R., & Reitinger, N. (2023). The HandyTech's Coming between 1 and 4: Privacy Opportunities and Challenges for the IoT Handyperson. In WPES 2023 - Proceedings of the 22nd Workshop on Privacy in the Electronic Society (pp. 129-134). (WPES 2023 - Proceedings of the 22nd Workshop on Privacy in the Electronic Society). Association for Computing Machinery. https://doi.org/10.1145/3603216.3624956

Sherkow, J. S., Park, J. K., & Lu, C. Y. (2023). Regulating Direct-to-Consumer Polygenic Risk Scores. JAMA - Journal of the American Medical Association, 330(8), 691-692. https://doi.org/10.1001/jama.2023.12262

Bader, A. C., Carbaugh, A. E., Davis, J. L., Krupa, K., & Malhi, R. S. (2023). Biological samples taken from Native American Ancestors are human remains under NAGPRA. American Journal of Biological Anthropology, 181(4), 527-534. https://doi.org/10.1002/ajpa.24726

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S., & Schroeder, H. (2023). Corrigendum to “Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter” [J. Archaeol. Sci. 105 (2019) 11–18, (S0305440318305661), (10.1016/j.jas.2019.02.006)]. Journal of Archaeological Science, 156, Article 105801. https://doi.org/10.1016/j.jas.2023.105801

David, L. T. (2023). Addressing the feasibility of people of African descent finding living African relatives using direct-to-consumer genetic testing. American Journal of Biological Anthropology, 181(2), 163-165. https://doi.org/10.1002/ajpa.24705

Aqil, A., Gill, S., Gokcumen, O., Malhi, R. S., Reese, E. A., Smith, J. L., Heaton, T. T., & Lindqvist, C. (2023). A paleogenome from a Holocene individual supports genetic continuity in Southeast Alaska. iScience, 26(5), Article 106581. https://doi.org/10.1016/j.isci.2023.106581

Mogol, A. N., Zuo, Q., Yoo, J. Y., Kaminsky, A. Z., Imir, O. B., Landesman, Y., Walker, C. J., & Madak erdogan, Z. (2023). NAD + Metabolism Generates a Metabolic Vulnerability in Endocrine-Resistant Metastatic Breast Tumors in Females. Endocrinology, Article bqad073. Advance online publication. https://doi.org/10.1210/endocr/bqad073

Kowal, E., Weyrich, L. S., Argüelles, J. M., Bader, A. C., Colwell, C., Cortez, A. D., Davis, J. L., Figueiro, G., Fox, K., Malhi, R. S., Matisoo-Smith, E., Nayak, A., Nelson, E. A., Nicholas, G., Nieves-Colón, M. A., Russell, L., Ulm, S., Vergara-Silva, F., Villanea, F. A., ... Tsosie, K. S. (2023). Community partnerships are fundamental to ethical ancient DNA research. Human Genetics and Genomics Advances, 4(2), Article 100161. https://doi.org/10.1016/j.xhgg.2022.100161

de Flamingh, A., Rivera-Colón, A. G., Gnoske, T. P., Kerbis Peterhans, J. C., Catchen, J., Malhi, R. S., & Roca, A. L. (2023). Numt Parser: automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera. Journal of Heredity, 114(2), 120-130. Article esac065. https://doi.org/10.1093/jhered/esac065

Sherkow, J. S., Adashi, E. Y., & Cohen, I. G. (2023). Assessing—and Extending—California’s Insulin Manufacturing Initiative. JAMA - Journal of the American Medical Association, 329(7), 533-534. https://doi.org/10.1001/jama.2023.0013

Lemley, M. A., & Sherkow, J. S. (2023). The Antibody Patent Paradox. Yale Law Journal, 132(4), 994-1064. https://doi.org/10.2139/ssrn.4032912

de Flamingh, A., Ishida, Y., Pečnerová, P., Vilchis, S., Siegismund, H. R., Van aarde, R. J., Malhi, R. S., & Roca, A. L. (2023). Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology. Frontiers in Genetics, 13, Article 1021004. https://doi.org/10.3389/fgene.2022.1021004

Xu, X., Wang, H., Lal, A., Gunter, C. A., & Li, B. (2023). EDoG: Adversarial Edge Detection for Graph Neural Networks. In Proceedings - 2023 IEEE Conference on Secure and Trustworthy Machine Learning, SaTML 2023 (pp. 291-305). (Proceedings - 2023 IEEE Conference on Secure and Trustworthy Machine Learning, SaTML 2023). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/SaTML54575.2023.00027

Cortez, A. D., Lippert, D., Davis, J. L., Nicholas, G., Malhi, R. S., Weyrich, L. S., Claw, K. G., Bader, A. C., & Colwell, C. (in press). Extracting the practices of paleogenomics: A study of ancient DNA labs and research in relation to Native Americans and Indigenous peoples. American Journal of Biological Anthropology. https://doi.org/10.1002/ajpa.24714

Xu, X., Hao, Q., Yang, Z., Li, B., Liebovitz, D., Wang, G., & Gunter, C. A. (2023). How to Cover up Anomalous Accesses to Electronic Health Records. In 32nd USENIX Security Symposium, USENIX Security 2023 (pp. 229-246). (32nd USENIX Security Symposium, USENIX Security 2023; Vol. 1). USENIX Association.

Zuo, Q., Park, N. H., Lee, J. K., Santaliz-Casiano, A., & Madak-Erdogan, Z. (in press). Navigating nonalcoholic fatty liver disease (NAFLD): Exploring the roles of estrogens, pharmacological and medical interventions, and life style. Steroids, Article 109330. https://doi.org/10.1016/j.steroids.2023.109330

Qiu, H., Mao, W., Patke, A., Wang, C., Franke, H., Kalbarczyk, Z. T., Başar, T., & Iyer, R. K. (2022). SIMPPO: A Scalable and Incremental Online Learning Framework for Serverless Resource Management. In SoCC 2022 - Proceedings of the 13th Symposium on Cloud Computing (pp. 306-322). (SoCC 2022 - Proceedings of the 13th Symposium on Cloud Computing). Association for Computing Machinery. https://doi.org/10.1145/3542929.3563475

Erdogan, Z. M., & Hammes, S. R. (2022). Expanding Our Scope and Our Identity. Journal of the Endocrine Society, 6(11), [bvac149]. https://doi.org/10.1210/jendso/bvac149

Nelczyk, A. T., Ma, L., Gupta, A. D., Gamage, H. E. V., McHenry, M. T., Henn, M. A., Kadiri, M., Wang, Y., Krawczynska, N., Bendre, S., He, S., Shahoei, S. H., Madak-Erdogan, Z., Hsiao, S. H., Saleh, T., Carpenter, V., Gewirtz, D. A., Spinella, M. J., & Nelson, E. R. (2022). The nuclear receptor TLX (NR2E1) inhibits growth and progression of triple- negative breast cancer. Biochimica et Biophysica Acta - Molecular Basis of Disease, 1868(11), [166515]. https://doi.org/10.1016/j.bbadis.2022.166515

Wilson, R. F. (2022). Harm, Not Privilege. Review of: John Adenitire A General Right to Conscientious Exemption: Beyond Religious Privilege (Cambridge University Press, 2020). Keele Law Review, 4. https://ssrn.com/abstract=4227150

Ksiazkiewicz, A., & Erol, F. (2022). Corrigendum for “Too tired to vote: A multi-national comparison of election turnout with sleep preferences and behaviors” [Elect. Stud., 78 (2022), 102491] (Electoral Studies (2022) 78, (S0261379422000518), (10.1016/j.electstud.2022.102491)). Electoral Studies, 79, [102514]. https://doi.org/10.1016/j.electstud.2022.102514

Ksiazkiewicz, A. (2022). Sleeping giant: A research agenda for politics and chronobiology. Politics and the Life Sciences, 41(2), 298-302. https://doi.org/10.1017/pls.2022.16

Ksiazkiewicz, A., & Erol, F. (2022). Too tired to vote: A multi-national comparison of election turnout with sleep preferences and behaviors. Electoral Studies, 78, [102491]. https://doi.org/10.1016/j.electstud.2022.102491

Sherkow, J. S. (2022). Writing Definitions in Rewriting Nature: Lessons from FDA Law. Boston University Law Review Online, 102. https://ssrn.com/abstract=4155715

Ouellette, L. L., Price II, W. N., Sachs, R., & Sherkow, J. S. (2022). Innovation Institutions and COVID-19, Part II. https://doi.org/10.2139/ssrn.4149035

Esiner, E., Tefek, U., Erol, H. S. M., Mashima, D., Chen, B., Hu, Y. C., Kalbarczyk, Z., & Nicol, D. M. (2022). LoMoS: Less-Online/More-Offline Signatures for Extremely Time-Critical Systems. IEEE Transactions on Smart Grid, 13(4), 3214-3226. https://doi.org/10.1109/TSG.2022.3156897

Bailey, R. L., Dog, T. L., Smith-Ryan, A. E., Das, S. K., Baker, F. C., Madak-Erdogan, Z., Hammond, B. R., Sesso, H. D., Eapen, A., Mitmesser, S. H., Wong, A., & Nguyen, H. (2022). Sex Differences Across the Life Course: A Focus On Unique Nutritional and Health Considerations among Women. Journal of Nutrition, 152(7), 1597-1610. https://doi.org/10.1093/jn/nxac059

Ma, L., Vidana Gamage, H. E., Tiwari, S., Han, C., Henn, M. A., Krawczynska, N., Dibaeinia, P., Koelwyn, G. J., Das Gupta, A., Bautista Rivas, R. O., Wright, C. L., Xu, F., Moore, K. J., Sinha, S., & Nelson, E. R. (2022). The Liver X Receptor Is Selectively Modulated to Differentially Alter Female Mammary Metastasis-associated Myeloid Cells. Endocrinology (United States), 163(7), [bqac072]. https://doi.org/10.1210/endocr/bqac072

Boyd, R. I., Ahmad, S., Singh, R., Fazal, Z., Prins, G. S., Erdogan, Z. M., Irudayaraj, J., & Spinella, M. J. (2022). Toward a Mechanistic Understanding of Poly-and Perfluoroalkylated Substances and Cancer. Cancers, 14(12), [2919]. https://doi.org/10.3390/cancers14122919

Zuo, Q., Park, N. H., Lee, J. K., & Madak Erdogan, Z. (2022). Liver Metastatic Breast Cancer: Epidemiology, Dietary Interventions, and Related Metabolism. Nutrients, 14(12). https://doi.org/10.3390/nu14122376

Zuo, Q., Mogol, A. N., Liu, Y. J., Casiano, A. S., Chien, C., Drnevich, J., Imir, O. B., Kulkoyluoglu-Cotul, E., Park, N. H., Shapiro, D. J., Park, B. H., Ziegler, Y., Katzenellenbogen, B. S., Aranda, E., O’Neill, J. D., Raghavendra, A. S., Tripathy, D., & Erdogan, Z. M. (2022). Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy. Molecular Cancer Research, 20(6), 923-937. https://doi.org/10.1158/1541-7786.MCR-21-0781

Bhogale, S., & Sinha, S. (2022). Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding. iScience, 25(5), [104152]. https://doi.org/10.1016/j.isci.2022.104152

Santaliz Casiano, A., Lee, A., Teteh, D., Madak Erdogan, Z., & Treviño, L. (2022). Endocrine-Disrupting Chemicals and Breast Cancer: Disparities in Exposure and Importance of Research Inclusivity. Endocrinology (United States), 163(5), [bqac034]. https://doi.org/10.1210/endocr/bqac034

Maino Vieytes, C. A., Rodriguez-Zas, S. L., Madak-Erdogan, Z., Smith, R. L., Zarins, K. R., Wolf, G. T., Rozek, L. S., Mondul, A. M., & Arthur , A. E. (2022). Adherence to a priori-Defined Diet Quality Indices Throughout the Early Disease Course Is Associated With Survival in Head and Neck Cancer Survivors: An Application Involving Marginal Structural Models. Frontiers in Nutrition, 9, [791141]. https://doi.org/10.3389/fnut.2022.791141

Qiu, H., Mao, W., Patke, A., Wang, C., Franke, H., Kalbarczyk, Z. T., Başar, T., & Iyer, R. K. (2022). Reinforcement learning for resource management in multi-Tenant serverless platforms. In EuroMLSys 2022 - Proceedings of the 2nd European Workshop on Machine Learning and Systems (pp. 20-28). (EuroMLSys 2022 - Proceedings of the 2nd European Workshop on Machine Learning and Systems). Association for Computing Machinery. https://doi.org/10.1145/3517207.3526971

Sherkow, J. S. (2022). Immaculate Conception? Priority and Invention in the CRISPR Patent Dispute. CRISPR Journal, 5(2), 174-180. https://doi.org/10.1089/crispr.2022.0033

Severson, A. L., Byrd, B. F., Mallott, E. K., Owings, A. C., DeGiorgio, M., de Flamingh, A., Nijmeh, C., Arellano, M. V., Leventhal, A., Rosenberg, N. A., & Malhi, R. S. (2022). Ancient and modern genomics of the Ohlone Indigenous population of California. Proceedings of the National Academy of Sciences, 119(13), e2111533119. [e2111533119]. https://doi.org/10.1073/pnas.2111533119

Cohen, I. G., Sherkow, J. S., & Adashi, E. Y. (2022). Handle with Care: The WHO Report on Human Genome Editing. Hastings Center Report, 52(2), 10-14. https://doi.org/10.1002/hast.1350

Hu, W. Y., Lu, R., Hu, D. P., Imir, O. B., Zuo, Q., Moline, D., Afradiasbagharani, P., Liu, L., Lowe, S., Birch, L., Griend, D. J. V., Madak-Erdogan, Z., & Prins, G. S. (2022). Per- and polyfluoroalkyl substances target and alter human prostate stem-progenitor cells. Biochemical Pharmacology, 197, [114902]. https://doi.org/10.1016/j.bcp.2021.114902

Sherkow, J. S. (2022). Preprint servers and patent prior art: Preprints can jeopardize the patentability of an invention. EMBO Reports, 23(2), [e54439]. https://doi.org/10.15252/embr.202154439

Seward, C. H., Saul, M. C., Troy, J. M., Dibaeinia, P., Zhang, H., Sinha, S., & Stubbs, L. J. (2022). An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice. PloS one, 17(2 February), [e0263632]. https://doi.org/10.1371/journal.pone.0263632

Sherkow, J. S., Barker, K. B., Braverman, I., Cook-Deegan, R., Durbin, R., Easter, C. L., Goldstein, M. M., Hudson, M., Kress, W. J., Lewin, H. A., Mathews, D. J. H., McCarthy, C., McCartney, A. M., da Silva, M., Torrance, A. W., & Greely, H. T. (2022). Ethical, legal, and social issues in the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115859119]. https://doi.org/10.1073/pnas.2115859119

Lewin, H. A., Richards, S., Aiden, E. L., Allende, M. L., Archibald, J. M., Bálint, M., Barker, K. B., Baumgartner, B., Belov, K., Bertorelle, G., Blaxter, M. L., Cai, J., Caperello, N. D., Carlson, K., Castilla-Rubio, J. C., Chaw, S. M., Chen, L., Childers, A. K., Coddington, J. A., ... Zhang, G. (2022). The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America, 119(4), [e2115635118]. https://doi.org/10.1073/pnas.2115635118

Friesen, P., Wilson, R. F., Kim, S., & Goedken, J. (2022). Consent for Intimate Exams on Unconscious Patients: Sharpening Legislative Efforts. Hastings Center Report, 52(1), 28-31. https://doi.org/10.1002/hast.1337

Hudson, C. M., Pattengale, N. D., Iyer, R. K., Kalbarczyk, Z. T., & Alli, N. (2022). Genomic and Synthetic Biology Digital Biosecurity. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 27, 402-406.

Sherkow, J. S. (2022). Regulatory Sandboxes and the Public Health. University of Illinois Law Review, 2022(1), 357-410. http://hdl.handle.net/2142/113404

Wilson, R. F. (2022). Cleaving Marriage and the State. In N. Palazzo, & J. A. Redding (Eds.), Queer and Religious Alliances in Family Law Politics and Beyond Anthem Press.

Patke, A., Qiu, H., Jha, S., Venugopal, S., Gazzetti, M., Pinto, C., Kalbarczyk, Z., & Iyer, R. (2022). Evaluating Hardware Memory Disaggregation under Delay and Contention. In Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2022 (pp. 1221-1227). (Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/IPDPSW55747.2022.00210

Jha, S., Cui, S., Tsai, T., Hari, S. K. S., Sullivan, M. B., Kalbarczyk, Z. T., Keckler, S. W., & Iyer, R. K. (2022). Exploiting Temporal Data Diversity for Detecting Safety-critical Faults in AV Compute Systems. In Proceedings - 52nd Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2022 (pp. 88-100). (Proceedings - 52nd Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DSN53405.2022.00021

Wilson, R. F. (2022). Fairness as a Path Forward on LGBTQ Rights and Religious Liberty. In C. Seiple, & D. R. Hoover (Eds.), The Routledge Handbook of Relgious Literacy, Pluralism, and Global Engagement (pp. 416-425). Routledge.

Gowrisankar, B., Mashima, D., Ong, W., Ye, Q., Esiner, E., Chen, B., & Kalbarczyk, Z. (2022). GateKeeper: Operator-centric Trusted App Management Framework on ARM TrustZone. In 2022 IEEE Conference on Communications and Network Security, CNS 2022 (pp. 100-108). (2022 IEEE Conference on Communications and Network Security, CNS 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CNS56114.2022.9947233

Yarlagadda, K., Zachwieja, A. J., de Flamingh, A., Phungviwatnikul, T., Rivera-Colón, A. G., Roseman, C., Shackelford, L., Swanson, K. S., & Malhi, R. S. (2022). Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes. Proceedings of the Royal Society B: Biological Sciences, 289(1974), [20220052]. https://doi.org/10.1098/rspb.2022.0052

Jung, S., & Ksiazkiewicz, A. (2022). Implicit and explicit state attachment among single and dual American citizens. Politics, Groups, and Identities, 10(2), 295-314. https://doi.org/10.1080/21565503.2020.1789884

Friesen, A., Ksiazkiewicz, A., & McDermott, R. (2022). Introduction to the Special Issue-Life Science in Politics: Methodological Innovations and Political Issues. Politics and the Life Sciences, 41(2), 155-160. https://doi.org/10.1017/pls.2022.17

Ksiazkiewicz, A., & Erol, F. (2022). Linking sleep, political ideology, and religious observance: a multi-national comparison. International Journal of Public Opinion Research, 34(3), [edac020]. https://doi.org/10.1093/ijpor/edac020

Mitra, C., Yoo, J. Y., Madak-Erdogan, Z., & Soliman, A. S. (2022). Spatial Analysis of Tumor Heterogeneity Using Machine Learning Techniques. In Proceedings - 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2022 (pp. 781-786). (Proceedings - 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/MASS56207.2022.00123

Wilson, R. F. (2022). The COVID-19 Worship Cases Lessons for Governors in Democratic Governance and Transparency over "Edicts". University of St. Thomas Law Journal, 18(2), 422-509. https://ir.stthomas.edu/ustlj/vol18/iss2/8/