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Core Facilities

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Core Facilities at the IGB is your resource for biological microscopy and image analysis. Our facilities are conveniently located, and we provide a variety of services to both IGB researchers and others in the campus community. Our facility is meant to encourage innovation – try new techniques and approaches to achieving your research goals without a significant investment in instrumentation or time.

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Core Facilities at the IGB is your resource for biological microscopy and image analysis. Our facilities are conveniently located, and we provide a variety of services to both IGB researchers and others in the campus community. Our facility is meant to encourage innovation – try new techniques and approaches to achieving your research goals without a significant investment in instrumentation or time.

We offer:

  • High-end equipment
  • User training
  • Ongoing support, including experiment design and data interpretation
  • Twenty-four hour access

IGB Core Facilities is located on the concourse level of the Carl R. Woese Institute for Genomic Biology at the University of Illinois at Urbana-Champaign.

Mission

The Core Facilities at the IGB is a state-of-the-art resource for biological microscopy and image analysis. The core mission of the facility is to provide IGB faculty, as well as faculty from across campus with the tools and expertise to meet their imaging goals. In addition to providing technical assistance in acquiring and analyzing microscopy images the staff is also able to aid in designing and interpreting experiments. Check out this video to find out more about the Core Facilities.

Education and Training

The Core Facilities train over one hundred new users a year on one or more instruments and are co-hosting a bioimaging camp for middle school girls with GAMES.

Our new user procedures form guides new users through the training process.  To request training (theory training is required for most microscopes including LSM 700, LSM 710, Apotome, SR-SIM, before the hands-on training), please fill out our training request form.  Users have access to IGB disk space through the IGB computer and network resources group to transfer data. To request access to the IGB building, please fill out the IGB Entry Request Form.

Training pages can be found here.

Collaboration

In addition to the typical fee for training and instrument time, collaborations with the core facilities staff can be beneficial in the development of unique methods or capabilities.  Publications containing work performed in the core facilities should use these guidelines for acknowledging the core facilities. Download a copy of our brochure.

The IGB Core cooperates with the following facilities on campus to provide an extensive selection of instrumentation to campus researchers:

Beckman ITG

Materials Research Laboratory

Molecular and Cellular Biology

Roy J. Carver Biotechnology Center

BioNanotechnology Laboratory

A list of additional facilities can be found here.

The Illinois Roy J. Carver Biotechnology Center (CBC) and Carl R. Woese Institute for Genomic Biology (IGB) have partnered to establish an integrated suite of next generation instrumentation that is now available for users to conduct cutting-edge Omics analyses within the three-dimensional (3D) structural, compositional and formational history of any given sample. Samples can be composed of: (1) exclusively tissues and cells; (2) a combination of tissues and cells with biomineral deposits (e.g., bones, teeth, ectopic calcification); and/or (3) exclusively biomineral deposits. This new analytical pipeline begins in the IGB Core Facility, with 3D micro-CT x-ray structural scans of entire small-to-large samples at a resolution of 3-100 microns (depending on sample size, shape and composition), coupled with micron-scale Raman characterization of the mineralogical composition of embedded biomineral deposits. High-quality histology sections and petrographic thin sections can be strategically prepared and further interrogated using the suite of other cutting-edge optical and electron microscopes available within the IGB Core Facility. Analysis of these samples can then continue with the coordinated efforts of the DNA Services, Cytometry and Microscopy to Omics (CMtO), and High Performance Computing Bioinformatics (HPCBio) facilities within the CBC, which creates a unique opportunity to conduct: (1) cell cytometry analysis and sorting; (2) 10X Genomics Visium CytAssist spatial transcriptomics and proteomics from total mRNA within original 3D tissue and biomineral structure (bridging histology and genomics); and (3) 10X Genomics Chromium high-throughput or deep single cell RNA-Seq. The specific suite of applicable microscopy and omics analyses will depend on sample type, composition and preservation, as well as project goals and budgetary constraints. Users who wish to use these integrated analytical facilities can begin by arranging a consultation session with the IGB and CBC Lab Directors identified on the websites listed above.

What’s new at the Core

The IGB Core is moving to BookitLab for instrument tracking

The IGB Core has purchased BookitLab for tracking instrument use, reserving instrument time and processing billing. The Core plans to setup BookitLab on the LSM 700 April 15th. The April 17th Lunch with the Core will be dedicated to introducing the BookitLab software to existing users.  The plan is to transition all instrument tracking to BookitLab by early May. The IGB BookitLab portal can be found here.

Please let us know if you have any questions.

Midwest Advanced MINFLUX and Super Resolution Workshop 2024

Save the Date! 

The IGB Core Facilities is hosting the 2nd Annual Midwest Advanced MINFLUX and Super Resolution Workshop from May 20th to 24th. You can find updated information here.

Lunch with the Core - Spring 2024

The IGB Core Facilities is hosting a Spring 2024 seminar series covering the instrumentation in the Core and some of the research taking place in the Core. The seminars are typically held from 12:00 - 1:00 pm in the Carl R. Woese Institute for Genomic Biology, Room 612 (Concourse level). Pizza will be provided to attendees. Please check the Lunch with the Core news posts and weekly emails for updates.

 

February 14, 2024

"Integrating Live Confocal Microscope Imagery of Plant Stomata with Gas Exchange Measurements" - Joseph Crawford, Postdoctoral Research Associate - Plant Biology

 Instrument: LSM 710

Joe's talk can be found here.

February 28, 2024

"Introduction to STEDYCON: A Confocal and STED System with Super-resolution Capabilities" - Umnia Doha, Research Scientist - Core Facilities 

Instrument: STEDYCON

Umnia's talk can be found here.

March 6, 2024

"X-Ray Computed Tomography in the Core Facility: Research and Manufacturing Applications of the NSI X5000" - Dr. Austin Cyphersmith, Assistant Director of Research Instrumentation - Core Facilities 

Instrument: X5000

Austin's talk can be found here.

March 27, 2024

"3D Data Analysis and Segmentation Tools" - Dr. Kingsley Boateng, Assistant Director of Bioscience Research & Microscopy - Core Facilities

Instrument: Amira & Imaris Software

Kingsley's talk can be found here.

April 3, 2024

"Revolutions in Data" - Dan Davidson, Director of CNRG and Research Computing - Carl R. Woese Institute for Genomic Biology

Dan's talk can be found here.

April 10, 2024

"A solid-liquid superposition model for interfacial solvation structures" - Qian Ai, Graduate Research Assistant - Materials Science & Engineering

Zoom:

https://illinois.zoom.us/j/88982127756?pwd=ME1jZWtZd2txUDBRS3pZa2lUWmNrUT09

Meeting ID: 889 8212 7756

Password: 201556

April 17, 2024

"Introduction to BookitLab" - Dr. Glenn Fried, Director of the Core Facilities

Join Zoom Meeting
https://illinois.zoom.us/j/85934995263?pwd=eE9ZeXNuNFozNCtKdytYMTMyK3dQUT09

Meeting ID: 859 3499 5263
Password: 166361

April 24, 2024

"Introducing Spatial Transcriptomics to Core Facilities: A Custom Built MERFISH Microscope " - Duncan Nall, Research Scientist - Core Facilities 

Instrument: MERFISH

Zoom:

https://illinois.zoom.us/j/87903107373?pwd=R1dYM2dIMmxxTVhWTGNsclNzY2ovdz09

Meeting ID: 879 0310 7373

Password: 783805

May 1, 2024

"Creating Art of Science" - Julia Pollack, Creative Program Manager - Carl R. Woese Institute for Genomic Biology

Zoom:

https://illinois.zoom.us/j/88064323223?pwd=VjJOM1drU2xVOUhHVnM0UUxIL0Q0dz09

Meeting ID: 880 6432 3223

Password: 410927

If you require special accommodations or have dietary restrictions, please email Hannah McClellan - hlm@illinois.edu.

The STEDYCON has arrived

The Care Facilities has purchased a STEDYCON system from Abberior Instruments. This microscope will function as a four color confocal or a two color 2D STED microscope with 40nm resolution. For more information, please visit our STEDYCON instrument page found here.

Dr. Reza Rajabi-Toustani has joined the IGB Core Facilities

Dr. Reza Rajabi-Toustani will be helping with hands-on training with the MINFLUX and other optical microscopes. Previously he was a Postdoc in Joe (Huanyu) Qiao Lab. Reza has been using the MINFLUX from the time it was installed and provided the July 2022 Image of the Month. It can be found here.

Dr. Umnia Doha has joined the IGB Core Facilities

Dr. Doha will be helping with training on the optical microscopes. Umnia comes from the Taher Saif Lab in Mechanical Science and Engineering. 

 

Location

The Core Facilities is located on the concourse level (basement) of the Carl R. Woese Institute for Genomic Biology at the University of Illinois Urbana-Champaign. The entrance is adjacent to Array Café.

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